University Hospital Hradec Kralove BRC Proteomics Lab - Targeted_Monitoring_ANTs_2024

Determination of ADP/ATP translocase isoform ratios in malignancy and cellular senescence
Data License: CC BY 4.0 | ProteomeXchange: PXD029523 | doi: https://doi.org/10.6069/v1z7-yw49
  • Organism: Homo sapiens
  • Instrument: Q Exactive Plus
  • SpikeIn: No
  • Keywords: ADP/ATP translocase, ANT1, ANT2, ANT3, senescence, glioblastoma, μLC-PRM, targeted mass spectrometry, bioinformatics
  • Lab head: Marie Vajrychova Submitter: Marie Vajrychova
Abstract
Cellular senescence has recently been recognized as a significant contributor to the poor prognosis of glioblastoma, one of the most aggressive brain tumors. Consequently, effectively eliminating senescent glioblastoma cells could benefit patients. Human ADP/ATP translocases (ANTs) play a role in oxidative phosphorylation in both normal and tumor cells. Previous research has shown that the sensitivity of senescent cells to mitochondria-targeted senolytics depends on the level of ANT2. In this study, we systematically mapped the transcript and protein levels of ANT isoforms in various types of senescence and glioblastoma tumorigenesis. We employed bioinformatics analysis, targeted mass spectrometry, RT-PCR, immunoblotting, and assessment of cellular energy state to elucidate how individual ANT isoforms are expressed during the development of senescence in non-cancerous and glioblastoma cells. Notably, we consistently observed an induction of ANT1 protein levels across all tested senescence types, while ANT2 and ANT3 exhibited variable changes. These alterations in ANT isoforms correlated with shifts in the cellular oxygen consumption rate. Our findings suggest that ANT isoforms are mutually interchangeable for oxidative phosphorylation, and manipulating individual ANT isoforms could be a potential target for senolytic therapy.
Experiment Description
For this study, a mass spectrometry-based quantitative method for targeted monitoring of isoform-specific ANT1, ANT2, and ANT3 peptides was optimized. We quantified changes in ANT isoforms in selected cellular senescence and cancer cellular models to compare the transcriptome and protein levels of ANTs.
Sample Description
Telomerase-immortalized human retinal pigment epithelial cell line, human foreskin fibroblasts (BJ), human glioma cell lines A-172 and U-87 purchased by ATCC, Manassas, VA, USA were used in this study.
Created on 8/31/24, 12:52 PM
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U87_TMZ_IFR_sky.zip2024-08-31 12:51:381121018
U87_TMZ_ANT_sky.zip2024-08-31 12:51:3849189418
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RPE1_hTERT_p16_D7_IFR_sky.zip2024-08-31 12:51:381121018
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RPE1_hTERT_20Gy_IFR_sky.zip2024-08-31 12:51:381121018
RPE1_hTERT_20Gy_ANT_sky.zip2024-08-31 12:51:38491810218
BJ_DX_IFR_sky.zip2024-08-31 12:51:381121018
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ANTs_2021_MicroLC_PRM_opt_35min_35k_Res_ANT3_IFRpep.sky.zip2024-08-31 12:51:37112126
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ANTs_2021_MicroLC_PRM_opt_NCE.sky.zip2024-08-31 12:51:3747145818
ANTs_2021_MicroLC_PRM_opt_H_pep_load.sky.zip2024-08-31 12:51:3747146818
ANTs_2021_MicroLC_PRM_opt_Target_pep_injection.sky.zip2024-08-31 12:51:374714629