22 Aug 2024 21:20:54,737 INFO : Copying experiment "Meta-Analysis and DIA-MS-based Proteomic Investigation of COPD Patients and Asymptomatic Smokers in the Indian population" from folder /IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD to /Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD
22 Aug 2024 21:20:54,737 INFO : =======================================
22 Aug 2024 21:20:54,755 DEBUG: Resetting Job ID: 8ed37c49-4334-103d-9292-dc22ffcd208d
22 Aug 2024 21:20:54,780 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
22 Aug 2024 21:20:54,780 INFO :
22 Aug 2024 21:20:54,780 INFO : Exporting experiment.
22 Aug 2024 21:21:20,276 INFO : Exporting files metadata.
22 Aug 2024 21:21:20,276 DEBUG: [/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD] Writing files metadata to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/export
22 Aug 2024 21:21:20,285 INFO :
22 Aug 2024 21:21:20,285 INFO : Experiment export completed successfully.
22 Aug 2024 21:21:20,285 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
22 Aug 2024 21:21:20,312 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
22 Aug 2024 21:21:20,312 INFO :
22 Aug 2024 21:21:20,312 INFO : Importing experiment.
22 Aug 2024 21:21:20,364 DEBUG: [/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD] Importing folder properties from: /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/export
22 Aug 2024 21:21:20,365 INFO : Loading folder properties (folder type, settings and active modules)
22 Aug 2024 21:21:20,365 DEBUG: [/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD] Folder type: Targeted MS
22 Aug 2024 21:21:20,366 DEBUG: [/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD] Active modules: Experiment, Core, Query, TargetedMS, Issues, Wiki, Search, Pipeline, Announcements, FileContent, MS2, Assay, API, PanoramaPublic
22 Aug 2024 21:21:20,498 INFO : Done importing folder properties (folder type, settings and active modules)
22 Aug 2024 21:21:20,499 INFO : Loading container specific module properties
22 Aug 2024 21:21:20,503 INFO : Done importing container specific module properties
22 Aug 2024 21:21:20,505 INFO : Loading queries
22 Aug 2024 21:21:20,575 INFO : 1 query imported
22 Aug 2024 21:21:20,575 INFO : Done importing queries
22 Aug 2024 21:21:20,576 INFO : Loading etl definitions
22 Aug 2024 21:21:20,578 INFO : Loading wikis
22 Aug 2024 21:21:20,580 INFO : 0 wikis imported
22 Aug 2024 21:21:20,580 INFO : Done importing wikis
22 Aug 2024 21:21:20,582 INFO : Starting Data Class Importer
22 Aug 2024 21:21:20,582 INFO : No types XAR file to process.
22 Aug 2024 21:21:20,582 INFO : Finished Data Class Importer
22 Aug 2024 21:21:20,582 INFO : Starting to copy files
22 Aug 2024 21:21:20,582 INFO : Copied 0 files
22 Aug 2024 21:21:20,582 INFO : Ensuring exp.data rows exist for imported files
22 Aug 2024 21:21:20,648 INFO : Starting Sample Type Importer
22 Aug 2024 21:21:20,648 INFO : No types XAR file to process.
22 Aug 2024 21:21:20,648 INFO : Finished Sample Type Importer
22 Aug 2024 21:21:20,649 INFO : Loading xar
22 Aug 2024 21:21:25,305 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-13734:TargetedMS.ImportSkyZip'
22 Aug 2024 21:21:25,307 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-13734:TargetedMS.ImportSkyZip.Core'
22 Aug 2024 21:21:25,309 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-13734:TargetedMS.ImportSkyZip.Output'
22 Aug 2024 21:21:25,309 DEBUG: Protocol import complete
22 Aug 2024 21:21:25,311 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-13734:Meta-Analysis+and+DIA-MS-based+Proteomic+Investigation+of+COPD+Patients+and+Asymptomatic+Smokers+in+the+Indian+population'
22 Aug 2024 21:21:25,311 DEBUG: Experiment/Run group import complete
22 Aug 2024 21:21:25,319 DEBUG: Protocol action set import complete
22 Aug 2024 21:21:25,328 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-13734:TargetedMS.ImportSkyZip'
22 Aug 2024 21:21:25,335 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-13734:98169424-41b2-103d-9292-dc22ffcd208d'
22 Aug 2024 21:21:25,339 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-13734:6c9c9922-41b4-103d-9292-dc22ffcd208d'
22 Aug 2024 21:21:25,339 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-13734:TargetedMS.ImportSkyZip.Core'
22 Aug 2024 21:21:25,341 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-13734:TargetedMS.ImportSkyZip.Output'
22 Aug 2024 21:21:25,342 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-13734:6c9c9a3a-41b4-103d-9292-dc22ffcd208d'
22 Aug 2024 21:21:25,348 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2024/IIT%20Bombay%20Proteomics%20-%20PRM-Human%20COPD/@files/export/xar/experiments_and_runs.xar.exploded/Run217381/Clinical%20COPD.sky.zip into the system
22 Aug 2024 21:21:25,349 INFO : Starting import from Clinical COPD.sky.zip
22 Aug 2024 21:21:25,353 INFO : Starting to import Skyline document from Clinical COPD.sky.zip
22 Aug 2024 21:21:25,358 INFO : Expanding Human COPD-13042024.protdb
22 Aug 2024 21:21:27,810 INFO : Expanding Human_COPD_18042024.blib
22 Aug 2024 21:21:27,812 INFO : Expanding Clinical COPD.skyd
22 Aug 2024 21:21:27,917 INFO : Expanding Clinical COPD.sky.view
22 Aug 2024 21:21:28,315 INFO : Expanding 16042024_COPD01_PRM_GS.raw
22 Aug 2024 21:21:29,146 INFO : Expanding 16042024_COPD07_PRM_GS.raw
22 Aug 2024 21:21:30,006 INFO : Expanding 16042024_NR02_PRM_GS.raw
22 Aug 2024 21:21:30,729 INFO : Expanding 16042024_NR05_PRM_GS.raw
22 Aug 2024 21:21:31,569 INFO : Expanding 16042024_NR07_PRM_GS.raw
22 Aug 2024 21:21:32,330 INFO : Expanding 16042024_SN01_PRM_GS.raw
22 Aug 2024 21:21:33,179 INFO : Expanding 16042024_SN04_PRM_GS.raw
22 Aug 2024 21:21:34,075 INFO : Expanding 16042024_SN06_PRM_GS.raw
22 Aug 2024 21:21:34,932 INFO : Expanding Clinical COPD.sky
22 Aug 2024 21:21:34,934 INFO : Expanding Clinical COPD.skyl
22 Aug 2024 21:21:34,937 INFO : Reading Skyline file, Clinical COPD.sky, to determine if the TransitionChromInfos in the document should be stored...
22 Aug 2024 21:21:34,939 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
22 Aug 2024 21:21:34,942 INFO : 9% Done
22 Aug 2024 21:21:35,240 DEBUG: Starting to load chromatogram headers
22 Aug 2024 21:21:35,242 DEBUG: Done loading chromatogram headers
22 Aug 2024 21:21:35,409 INFO : Inserting sp|P30041|PRDX6_HUMAN
22 Aug 2024 21:21:35,416 INFO : 18% Done
22 Aug 2024 21:21:35,427 INFO : 26% Done
22 Aug 2024 21:21:35,433 DEBUG: Total peptides inserted: 2
22 Aug 2024 21:21:35,433 INFO : Inserting sp|P01880|IGHD_HUMAN
22 Aug 2024 21:21:35,440 INFO : 34% Done
22 Aug 2024 21:21:35,450 INFO : 43% Done
22 Aug 2024 21:21:35,456 DEBUG: Total peptides inserted: 2
22 Aug 2024 21:21:35,456 INFO : Inserting sp|Q9UEW3|MARCO_HUMAN
22 Aug 2024 21:21:35,461 INFO : 50% Done
22 Aug 2024 21:21:35,469 INFO : 59% Done
22 Aug 2024 21:21:35,478 INFO : 68% Done
22 Aug 2024 21:21:35,486 INFO : 74% Done
22 Aug 2024 21:21:35,496 INFO : 82% Done
22 Aug 2024 21:21:35,502 DEBUG: Total peptides inserted: 5
22 Aug 2024 21:21:35,502 INFO : Inserting sp|P08246|ELNE_HUMAN
22 Aug 2024 21:21:35,508 INFO : 91% Done
22 Aug 2024 21:21:35,514 DEBUG: Total peptides inserted: 1
22 Aug 2024 21:21:35,514 INFO : Inserting sp|P32320|CDD_HUMAN
22 Aug 2024 21:21:35,520 INFO : 98% Done
22 Aug 2024 21:21:35,526 DEBUG: Total peptides inserted: 1
22 Aug 2024 21:21:35,526 INFO : Done parsing Skyline document.
22 Aug 2024 21:21:35,927 INFO : Creating and populating temp tables for Proportion values
22 Aug 2024 21:21:35,933 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
22 Aug 2024 21:21:35,939 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
22 Aug 2024 21:21:35,943 INFO : Cleaning up temp tables
22 Aug 2024 21:21:36,419 INFO : Completed import of Skyline document from Clinical COPD.sky.zip
22 Aug 2024 21:21:36,421 INFO : 100% Done
22 Aug 2024 21:21:36,426 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2024/IIT%20Bombay%20Proteomics%20-%20PRM-Human%20COPD/@files/export/xar/experiments_and_runs.xar.exploded/Run217381/Clinical%20COPD.sky.zip into the system
22 Aug 2024 21:21:36,426 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2024/IIT%20Bombay%20Proteomics%20-%20PRM-Human%20COPD/@files/export/xar/experiments_and_runs.xar.exploded/Run217381/Clinical%20COPD/Clinical%20COPD.skyd into the system
22 Aug 2024 21:21:36,427 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2024/IIT%20Bombay%20Proteomics%20-%20PRM-Human%20COPD/@files/export/xar/experiments_and_runs.xar.exploded/Run217381/Clinical%20COPD/Clinical%20COPD.skyd into the system
22 Aug 2024 21:21:36,431 INFO : Done importing xar
22 Aug 2024 21:21:36,432 INFO : Loading pages and webpart properties
22 Aug 2024 21:21:36,503 INFO : Done importing 3 page(s) with 5 webpart(s)
22 Aug 2024 21:21:36,503 INFO : Loading File Browser config
22 Aug 2024 21:21:36,503 INFO : Done importing File Browser config
22 Aug 2024 21:21:36,504 INFO : Starting Sample Status Data import
22 Aug 2024 21:21:36,504 INFO : No sample types XAR file to process.
22 Aug 2024 21:21:36,504 INFO : Finished importing Sample Status Data
22 Aug 2024 21:21:36,509 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
22 Aug 2024 21:21:36,511 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
22 Aug 2024 21:21:36,511 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
22 Aug 2024 21:21:36,512 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
22 Aug 2024 21:21:36,512 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
22 Aug 2024 21:21:36,512 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
22 Aug 2024 21:21:36,514 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
22 Aug 2024 21:21:36,521 INFO : Moving files to folder /Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD and creating symlinks
22 Aug 2024 21:21:36,522 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles
22 Aug 2024 21:21:36,524 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles/PRM-Raw files
22 Aug 2024 21:21:36,525 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_NR05_PRM_GS.raw to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_NR05_PRM_GS.raw
22 Aug 2024 21:21:36,529 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_NR05_PRM_GS.raw targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_NR05_PRM_GS.raw
22 Aug 2024 21:21:36,531 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_SN04_PRM_GS.raw to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_SN04_PRM_GS.raw
22 Aug 2024 21:21:36,532 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_SN04_PRM_GS.raw targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_SN04_PRM_GS.raw
22 Aug 2024 21:21:36,533 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_NR02_PRM_GS.raw to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_NR02_PRM_GS.raw
22 Aug 2024 21:21:36,534 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_NR02_PRM_GS.raw targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_NR02_PRM_GS.raw
22 Aug 2024 21:21:36,535 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_SN01_PRM_GS.raw to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_SN01_PRM_GS.raw
22 Aug 2024 21:21:36,536 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_SN01_PRM_GS.raw targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_SN01_PRM_GS.raw
22 Aug 2024 21:21:36,537 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_NR07_PRM_GS.raw to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_NR07_PRM_GS.raw
22 Aug 2024 21:21:36,538 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_NR07_PRM_GS.raw targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_NR07_PRM_GS.raw
22 Aug 2024 21:21:36,539 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_COPD01_PRM_GS.raw to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_COPD01_PRM_GS.raw
22 Aug 2024 21:21:36,540 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_COPD01_PRM_GS.raw targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_COPD01_PRM_GS.raw
22 Aug 2024 21:21:36,541 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_SN06_PRM_GS.raw to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_SN06_PRM_GS.raw
22 Aug 2024 21:21:36,542 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_SN06_PRM_GS.raw targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_SN06_PRM_GS.raw
22 Aug 2024 21:21:36,543 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_COPD07_PRM_GS.raw to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_COPD07_PRM_GS.raw
22 Aug 2024 21:21:36,544 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_COPD07_PRM_GS.raw targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/RawFiles/PRM-Raw files/16042024_COPD07_PRM_GS.raw
22 Aug 2024 21:21:36,545 DEBUG: Directory created: /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD
22 Aug 2024 21:21:36,546 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/16042024_NR05_PRM_GS.raw to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/16042024_NR05_PRM_GS.raw
22 Aug 2024 21:21:36,547 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/16042024_NR05_PRM_GS.raw targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/16042024_NR05_PRM_GS.raw
22 Aug 2024 21:21:36,548 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/16042024_SN04_PRM_GS.raw to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/16042024_SN04_PRM_GS.raw
22 Aug 2024 21:21:36,549 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/16042024_SN04_PRM_GS.raw targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/16042024_SN04_PRM_GS.raw
22 Aug 2024 21:21:36,550 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/16042024_NR02_PRM_GS.raw to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/16042024_NR02_PRM_GS.raw
22 Aug 2024 21:21:36,551 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/16042024_NR02_PRM_GS.raw targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/16042024_NR02_PRM_GS.raw
22 Aug 2024 21:21:36,552 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/Clinical COPD.sky to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/Clinical COPD.sky
22 Aug 2024 21:21:36,553 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/Clinical COPD.sky targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/Clinical COPD.sky
22 Aug 2024 21:21:36,554 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/Clinical COPD.skyl to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/Clinical COPD.skyl
22 Aug 2024 21:21:36,555 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/Clinical COPD.skyl targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/Clinical COPD.skyl
22 Aug 2024 21:21:36,556 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/Human COPD-13042024.protdb to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/Human COPD-13042024.protdb
22 Aug 2024 21:21:36,557 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/Human COPD-13042024.protdb targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/Human COPD-13042024.protdb
22 Aug 2024 21:21:36,558 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/Human_COPD_18042024.blib to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/Human_COPD_18042024.blib
22 Aug 2024 21:21:36,559 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/Human_COPD_18042024.blib targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/Human_COPD_18042024.blib
22 Aug 2024 21:21:36,560 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/16042024_SN01_PRM_GS.raw to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/16042024_SN01_PRM_GS.raw
22 Aug 2024 21:21:36,561 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/16042024_SN01_PRM_GS.raw targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/16042024_SN01_PRM_GS.raw
22 Aug 2024 21:21:36,562 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/Clinical COPD.sky.view to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/Clinical COPD.sky.view
22 Aug 2024 21:21:36,563 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/Clinical COPD.sky.view targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/Clinical COPD.sky.view
22 Aug 2024 21:21:36,564 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/16042024_NR07_PRM_GS.raw to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/16042024_NR07_PRM_GS.raw
22 Aug 2024 21:21:36,565 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/16042024_NR07_PRM_GS.raw targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/16042024_NR07_PRM_GS.raw
22 Aug 2024 21:21:36,566 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/Clinical COPD.skyd to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/Clinical COPD.skyd
22 Aug 2024 21:21:36,567 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/Clinical COPD.skyd targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/Clinical COPD.skyd
22 Aug 2024 21:21:36,568 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/16042024_COPD01_PRM_GS.raw to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/16042024_COPD01_PRM_GS.raw
22 Aug 2024 21:21:36,569 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/16042024_COPD01_PRM_GS.raw targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/16042024_COPD01_PRM_GS.raw
22 Aug 2024 21:21:36,571 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/16042024_SN06_PRM_GS.raw to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/16042024_SN06_PRM_GS.raw
22 Aug 2024 21:21:36,572 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/16042024_SN06_PRM_GS.raw targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/16042024_SN06_PRM_GS.raw
22 Aug 2024 21:21:36,573 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/16042024_COPD07_PRM_GS.raw to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/16042024_COPD07_PRM_GS.raw
22 Aug 2024 21:21:36,574 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD/16042024_COPD07_PRM_GS.raw targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/16042024_COPD07_PRM_GS.raw
22 Aug 2024 21:21:36,575 DEBUG: Moved file /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD.sky.zip to /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD.sky.zip
22 Aug 2024 21:21:36,576 DEBUG: Created symlink /data/labkey/files/IIT Bombay - Proteomics/Lab users/Gautam Sharma/PRM-Human COPD/@files/Clinical COPD.sky.zip targeting /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD.sky.zip
22 Aug 2024 21:21:36,577 INFO : Aligning data files urls in folder: /Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD
22 Aug 2024 21:21:36,579 DEBUG: Setting filePathRoot on copied run: Clinical COPD.sky.zip to: /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files
22 Aug 2024 21:21:36,581 DEBUG: Setting dataFileUri on copied data: Clinical COPD.sky.zip to: /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD.sky.zip
22 Aug 2024 21:21:36,583 DEBUG: Setting dataFileUri on copied data: Clinical COPD.skyd to: /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/Clinical COPD/Clinical COPD.skyd
22 Aug 2024 21:21:36,583 INFO : Importing files metadata.
22 Aug 2024 21:21:36,583 DEBUG: [/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD] Reading files metadata from /data/labkey/files/Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD/@files/export
22 Aug 2024 21:21:36,584 INFO :
22 Aug 2024 21:21:36,584 INFO : Experiment import completed successfully.
22 Aug 2024 21:21:36,584 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
22 Aug 2024 21:21:36,604 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
22 Aug 2024 21:21:36,604 INFO :
22 Aug 2024 21:21:36,604 INFO : Checking for library folders.
22 Aug 2024 21:21:36,605 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
22 Aug 2024 21:21:36,622 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
22 Aug 2024 21:21:36,622 INFO :
22 Aug 2024 21:21:36,622 INFO : Finishing up experiment copy.
22 Aug 2024 21:21:36,623 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2024/IIT Bombay Proteomics - PRM-Human COPD
22 Aug 2024 21:21:36,624 INFO : Setting version on new experiment to 1
22 Aug 2024 21:21:36,626 INFO : Updating permanent link to point to the new copy of the data.
22 Aug 2024 21:21:36,653 INFO : Removing copy permissions given to Panorama Public
22 Aug 2024 21:21:36,657 INFO : Adding read permissions to all users that are folder admins in the source folder.
22 Aug 2024 21:21:36,657 INFO : Assigning ReaderRole to meharunnissakohli@gmail.com
22 Aug 2024 21:21:36,657 INFO : Assigning ReaderRole to graviksharma45@gmail.com
22 Aug 2024 21:21:36,657 INFO : Assigning ReaderRole to mgjpai@gmail.com
22 Aug 2024 21:21:36,657 INFO : Assigning ReaderRole to sanjeeva@iitb.ac.in
22 Aug 2024 21:21:36,657 INFO : Assigning PanoramaPublicSubmitterRole to graviksharma45@gmail.com
22 Aug 2024 21:21:36,657 INFO : Assigning PanoramaPublicSubmitterRole to sanjeeva@iitb.ac.in
22 Aug 2024 21:21:36,663 INFO : User graviksharma45@gmail.com is already a member of group Panorama Public Submitters
22 Aug 2024 21:21:36,663 INFO : User sanjeeva@iitb.ac.in is already a member of group Panorama Public Submitters
22 Aug 2024 21:21:36,663 INFO : Updating the 'Raw Data' tab configuration
22 Aug 2024 21:21:36,664 INFO : Creating a reviewer account.
22 Aug 2024 21:21:36,741 INFO : Created reviewer with email: panorama+reviewer287@proteinms.net
22 Aug 2024 21:21:36,741 INFO : Generating password.
22 Aug 2024 21:21:36,876 INFO : Set reviewer password successfully.
22 Aug 2024 21:21:36,880 INFO : Adding user panorama+reviewer287@proteinms.net to group Reviewers
22 Aug 2024 21:21:36,883 INFO : Hiding the Data Pipeline tab.
22 Aug 2024 21:21:36,888 INFO : Updating Submission. Setting copiedExperimentId to 1901
22 Aug 2024 21:21:38,943 INFO : Assigning a ProteomeXchange ID.
22 Aug 2024 21:21:40,746 INFO : Assigned ProteomeXchange ID: PXD055103
22 Aug 2024 21:21:40,746 INFO : Assigning a DOI.
22 Aug 2024 21:21:41,537 INFO : Assigned DOI: 10.6069/7mm7-br53
22 Aug 2024 21:21:41,678 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'