06 Aug 2015 22:00:42,983 INFO : Copying experiment "Evaluation of multi-tRNA synthetase complex by multiple reaction monitoring mass spectrometry coupled with size exclusion chromatography" from folder /Korean Institute of Science and Technology - LMP/ARS_SEC_AP_MRM to /Panorama Public/2015/Heesung - ARS_SEC_AP_MRM
06 Aug 2015 22:00:42,983 INFO : =======================================
06 Aug 2015 22:00:43,163 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'
06 Aug 2015 22:00:43,165 INFO :
06 Aug 2015 22:00:43,165 INFO : Exporting experiment.
06 Aug 2015 22:00:47,472 INFO :
06 Aug 2015 22:00:47,472 INFO : Experiment export completed successfully.
06 Aug 2015 22:00:47,472 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentExportTask'
06 Aug 2015 22:00:47,521 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentImportTask' at location 'webserver'
06 Aug 2015 22:00:47,521 INFO :
06 Aug 2015 22:00:47,521 INFO : Importing experiment.
06 Aug 2015 22:00:47,521 WARN : Import of groups outside of project context not supported.
06 Aug 2015 22:00:47,524 INFO : Loading folder properties (folder type, settings and active modules)
06 Aug 2015 22:00:47,572 INFO : Done importing folder properties (folder type, settings and active modules)
06 Aug 2015 22:00:47,574 INFO : Done importing container specific module properties
06 Aug 2015 22:00:47,576 INFO : Loading wikis
06 Aug 2015 22:00:47,577 INFO : 0 wikis imported
06 Aug 2015 22:00:47,577 INFO : Done importing wikis
06 Aug 2015 22:00:47,579 INFO : Loading xar
06 Aug 2015 22:00:48,305 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-1356:TargetedMS.ImportSkyZip'
06 Aug 2015 22:00:48,307 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-1356:TargetedMS.ImportSkyZip.Core'
06 Aug 2015 22:00:48,310 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-1356:TargetedMS.ImportSkyZip.Output'
06 Aug 2015 22:00:48,310 DEBUG: Protocol import complete
06 Aug 2015 22:00:48,341 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-1356:Evaluation+of+multi-tRNA+synthetase+complex+by+multiple+reaction+monitoring+mass+spectrometry+coupled+with+size+exclusion+chromatography'
06 Aug 2015 22:00:48,341 DEBUG: Experiment/Run group import complete
06 Aug 2015 22:00:48,360 DEBUG: Protocol action set import complete
06 Aug 2015 22:00:48,388 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1356:TargetedMS.ImportSkyZip'
06 Aug 2015 22:00:48,547 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-1356:d5ff7b2a-1d3e-1033-89b5-3013bb9b75bc'
06 Aug 2015 22:00:48,547 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1356:TargetedMS.ImportSkyZip.Core'
06 Aug 2015 22:00:48,551 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1356:TargetedMS.ImportSkyZip.Output'
06 Aug 2015 22:00:48,552 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-1356:d5ff7b9e-1d3e-1033-89b5-3013bb9b75bc'
06 Aug 2015 22:00:48,562 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1356:TargetedMS.ImportSkyZip'
06 Aug 2015 22:00:48,569 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-1356:d5ff7aab-1d3e-1033-89b5-3013bb9b75bc'
06 Aug 2015 22:00:48,569 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1356:TargetedMS.ImportSkyZip.Core'
06 Aug 2015 22:00:48,571 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1356:TargetedMS.ImportSkyZip.Output'
06 Aug 2015 22:00:48,572 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-1356:d5ff7b0c-1d3e-1033-89b5-3013bb9b75bc'
06 Aug 2015 22:00:48,579 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1356:TargetedMS.ImportSkyZip'
06 Aug 2015 22:00:48,585 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-1356:d5ff7bc7-1d3e-1033-89b5-3013bb9b75bc'
06 Aug 2015 22:00:48,585 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1356:TargetedMS.ImportSkyZip.Core'
06 Aug 2015 22:00:48,587 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1356:TargetedMS.ImportSkyZip.Output'
06 Aug 2015 22:00:48,588 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-1356:d5ff7c39-1d3e-1033-89b5-3013bb9b75bc'
06 Aug 2015 22:00:48,595 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1356:TargetedMS.ImportSkyZip'
06 Aug 2015 22:00:48,601 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-1356:d5ff7c53-1d3e-1033-89b5-3013bb9b75bc'
06 Aug 2015 22:00:48,601 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1356:TargetedMS.ImportSkyZip.Core'
06 Aug 2015 22:00:48,603 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-1356:TargetedMS.ImportSkyZip.Output'
06 Aug 2015 22:00:48,604 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-1356:d5ff7cc5-1d3e-1033-89b5-3013bb9b75bc'
06 Aug 2015 22:00:48,625 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Heesung%20-%20ARS_SEC_AP_MRM/@files/export/xar/experiments_and_runs.xar.exploded/Run2528/ARS_20141025_Kover_AP_2015-08-05_11-15-24.sky.zip into the system
06 Aug 2015 22:00:48,627 INFO : Starting import from ARS_20141025_Kover_AP_2015-08-05_11-15-24.sky.zip
06 Aug 2015 22:00:48,632 INFO : Starting to import Skyline document from ARS_20141025_Kover_AP_2015-08-05_11-15-24.sky.zip
06 Aug 2015 22:00:48,632 INFO : Expanding ARS_20141025_Kover_AP.skyd
06 Aug 2015 22:00:48,770 INFO : Expanding ARS_20141025_Kover_AP.sky.view
06 Aug 2015 22:00:48,770 INFO : Expanding ARS_20141025_Kover_AP.sky
06 Aug 2015 22:00:48,803 WARN : The version of this Skyline document is 3.1. This is newer than the highest supported version 2.62
06 Aug 2015 22:00:48,956 INFO : Inserting AARS
06 Aug 2015 22:00:50,044 INFO : Inserting AIMP1
06 Aug 2015 22:00:51,165 INFO : Inserting AIMP2
06 Aug 2015 22:00:52,225 INFO : Inserting AIMP2DX2
06 Aug 2015 22:00:52,908 INFO : Inserting AIMP3
06 Aug 2015 22:00:53,925 INFO : Inserting CARS
06 Aug 2015 22:00:54,379 INFO : Inserting DARS
06 Aug 2015 22:00:55,452 INFO : Inserting EPRS
06 Aug 2015 22:00:56,502 INFO : Inserting FARSA
06 Aug 2015 22:00:57,498 INFO : Inserting FARSB
06 Aug 2015 22:00:58,463 INFO : Inserting GARS
06 Aug 2015 22:00:58,929 INFO : Inserting HARS
06 Aug 2015 22:00:59,886 INFO : Inserting IARS
06 Aug 2015 22:01:00,991 INFO : Inserting KARS
06 Aug 2015 22:01:01,608 INFO : Inserting LARS
06 Aug 2015 22:01:02,172 INFO : Inserting MARS
06 Aug 2015 22:01:03,266 INFO : Inserting NARS
06 Aug 2015 22:01:03,784 INFO : Inserting QARS
06 Aug 2015 22:01:04,865 INFO : Inserting RARS
06 Aug 2015 22:01:05,394 INFO : Inserting SARS
06 Aug 2015 22:01:05,871 INFO : Inserting TARS
06 Aug 2015 22:01:06,408 INFO : Inserting TARSL2
06 Aug 2015 22:01:07,408 INFO : Inserting VARS
06 Aug 2015 22:01:07,883 INFO : Inserting WARS
06 Aug 2015 22:01:08,634 INFO : Inserting YARS
06 Aug 2015 22:01:09,148 INFO : Completed import of Skyline document from ARS_20141025_Kover_AP_2015-08-05_11-15-24.sky.zip
06 Aug 2015 22:01:09,156 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Heesung%20-%20ARS_SEC_AP_MRM/@files/export/xar/experiments_and_runs.xar.exploded/Run2528/ARS_20141025_Kover_AP_2015-08-05_11-15-24.sky.zip into the system
06 Aug 2015 22:01:09,156 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Heesung%20-%20ARS_SEC_AP_MRM/@files/export/xar/experiments_and_runs.xar.exploded/Run2527/ARS_20141031_calibration_2015-08-05_11-14-44.sky.zip into the system
06 Aug 2015 22:01:09,158 INFO : Starting import from ARS_20141031_calibration_2015-08-05_11-14-44.sky.zip
06 Aug 2015 22:01:09,164 INFO : Starting to import Skyline document from ARS_20141031_calibration_2015-08-05_11-14-44.sky.zip
06 Aug 2015 22:01:09,165 INFO : Expanding ARS_20141031_calibration.skyd
06 Aug 2015 22:01:09,330 INFO : Expanding ARS_20141031_calibration.sky.view
06 Aug 2015 22:01:09,331 INFO : Expanding ARS_20141031_calibration.sky
06 Aug 2015 22:01:09,359 WARN : The version of this Skyline document is 3.1. This is newer than the highest supported version 2.62
06 Aug 2015 22:01:09,455 INFO : Inserting AARS
06 Aug 2015 22:01:10,388 INFO : Inserting AIMP1
06 Aug 2015 22:01:11,199 INFO : Inserting AIMP2
06 Aug 2015 22:01:12,005 INFO : Inserting AIMP2DX2
06 Aug 2015 22:01:12,585 INFO : Inserting AIMP3
06 Aug 2015 22:01:13,406 INFO : Inserting CARS
06 Aug 2015 22:01:13,815 INFO : Inserting DARS
06 Aug 2015 22:01:14,625 INFO : Inserting EPRS
06 Aug 2015 22:01:15,532 INFO : Inserting FARSA
06 Aug 2015 22:01:16,457 INFO : Inserting FARSB
06 Aug 2015 22:01:17,356 INFO : Inserting GARS
06 Aug 2015 22:01:17,807 INFO : Inserting HARS
06 Aug 2015 22:01:18,726 INFO : Inserting IARS
06 Aug 2015 22:01:19,627 INFO : Inserting KARS
06 Aug 2015 22:01:20,078 INFO : Inserting LARS
06 Aug 2015 22:01:20,530 INFO : Inserting MARS
06 Aug 2015 22:01:21,425 INFO : Inserting NARS
06 Aug 2015 22:01:21,875 INFO : Inserting QARS
06 Aug 2015 22:01:22,406 INFO : Inserting RARS
06 Aug 2015 22:01:22,590 INFO : Inserting SARS
06 Aug 2015 22:01:22,955 INFO : Inserting TARS
06 Aug 2015 22:01:23,402 INFO : Inserting TARSL2
06 Aug 2015 22:01:24,292 INFO : Inserting VARS
06 Aug 2015 22:01:24,728 INFO : Inserting WARS
06 Aug 2015 22:01:25,176 INFO : Inserting YARS
06 Aug 2015 22:01:25,627 INFO : Completed import of Skyline document from ARS_20141031_calibration_2015-08-05_11-14-44.sky.zip
06 Aug 2015 22:01:25,635 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Heesung%20-%20ARS_SEC_AP_MRM/@files/export/xar/experiments_and_runs.xar.exploded/Run2527/ARS_20141031_calibration_2015-08-05_11-14-44.sky.zip into the system
06 Aug 2015 22:01:25,635 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Heesung%20-%20ARS_SEC_AP_MRM/@files/export/xar/experiments_and_runs.xar.exploded/Run2529/ARS_20141008_HEK_2015-08-05_11-15-08.sky.zip into the system
06 Aug 2015 22:01:25,638 INFO : Starting import from ARS_20141008_HEK_2015-08-05_11-15-08.sky.zip
06 Aug 2015 22:01:25,644 INFO : Starting to import Skyline document from ARS_20141008_HEK_2015-08-05_11-15-08.sky.zip
06 Aug 2015 22:01:25,644 INFO : Expanding ARS_20141008_HEK.skyd
06 Aug 2015 22:01:25,902 INFO : Expanding ARS_20141008_HEK.sky.view
06 Aug 2015 22:01:25,903 INFO : Expanding ARS_20141008_HEK.sky
06 Aug 2015 22:01:25,938 WARN : The version of this Skyline document is 3.1. This is newer than the highest supported version 2.62
06 Aug 2015 22:01:26,018 INFO : Inserting AARS
06 Aug 2015 22:01:27,122 INFO : Inserting AIMP1
06 Aug 2015 22:01:28,260 INFO : Inserting AIMP2
06 Aug 2015 22:01:29,429 INFO : Inserting AIMP2DX2
06 Aug 2015 22:01:30,499 INFO : Inserting AIMP3
06 Aug 2015 22:01:31,860 INFO : Inserting CARS
06 Aug 2015 22:01:32,466 INFO : Inserting DARS
06 Aug 2015 22:01:33,713 INFO : Inserting EPRS
06 Aug 2015 22:01:34,804 INFO : Inserting FARSA
06 Aug 2015 22:01:36,012 INFO : Inserting FARSB
06 Aug 2015 22:01:37,275 INFO : Inserting GARS
06 Aug 2015 22:01:37,836 INFO : Inserting HARS
06 Aug 2015 22:01:38,882 INFO : Inserting IARS
06 Aug 2015 22:01:39,927 INFO : Inserting KARS
06 Aug 2015 22:01:40,429 INFO : Inserting LARS
06 Aug 2015 22:01:40,949 INFO : Inserting MARS
06 Aug 2015 22:01:42,014 INFO : Inserting NARS
06 Aug 2015 22:01:42,537 INFO : Inserting QARS
06 Aug 2015 22:01:43,584 INFO : Inserting RARS
06 Aug 2015 22:01:44,128 INFO : Inserting SARS
06 Aug 2015 22:01:44,660 INFO : Inserting TARS
06 Aug 2015 22:01:45,172 INFO : Inserting TARSL2
06 Aug 2015 22:01:46,211 INFO : Inserting VARS
06 Aug 2015 22:01:46,736 INFO : Inserting WARS
06 Aug 2015 22:01:47,250 INFO : Inserting YARS
06 Aug 2015 22:01:47,767 INFO : Completed import of Skyline document from ARS_20141008_HEK_2015-08-05_11-15-08.sky.zip
06 Aug 2015 22:01:47,774 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Heesung%20-%20ARS_SEC_AP_MRM/@files/export/xar/experiments_and_runs.xar.exploded/Run2529/ARS_20141008_HEK_2015-08-05_11-15-08.sky.zip into the system
06 Aug 2015 22:01:47,774 DEBUG: Trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Heesung%20-%20ARS_SEC_AP_MRM/@files/export/xar/experiments_and_runs.xar.exploded/Run2530/ARS_20141005_Kover_293T_2015-08-05_11-15-39.sky.zip into the system
06 Aug 2015 22:01:47,777 INFO : Starting import from ARS_20141005_Kover_293T_2015-08-05_11-15-39.sky.zip
06 Aug 2015 22:01:47,783 INFO : Starting to import Skyline document from ARS_20141005_Kover_293T_2015-08-05_11-15-39.sky.zip
06 Aug 2015 22:01:47,783 INFO : Expanding ARS_20141005_Kover_293T.skyd
06 Aug 2015 22:01:48,022 INFO : Expanding ARS_20141005_Kover_293T.sky.view
06 Aug 2015 22:01:48,022 INFO : Expanding ARS_20141005_Kover_293T.sky
06 Aug 2015 22:01:48,059 WARN : The version of this Skyline document is 3.1. This is newer than the highest supported version 2.62
06 Aug 2015 22:01:48,165 INFO : Inserting AARS
06 Aug 2015 22:01:49,258 INFO : Inserting AIMP1
06 Aug 2015 22:01:50,323 INFO : Inserting AIMP2
06 Aug 2015 22:01:51,399 INFO : Inserting AIMP2DX2
06 Aug 2015 22:01:52,160 INFO : Inserting AIMP3
06 Aug 2015 22:01:53,589 INFO : Inserting CARS
06 Aug 2015 22:01:54,231 INFO : Inserting DARS
06 Aug 2015 22:01:55,455 INFO : Inserting EPRS
06 Aug 2015 22:01:56,529 INFO : Inserting FARSA
06 Aug 2015 22:01:57,609 INFO : Inserting FARSB
06 Aug 2015 22:01:58,681 INFO : Inserting GARS
06 Aug 2015 22:01:59,216 INFO : Inserting HARS
06 Aug 2015 22:02:00,300 INFO : Inserting IARS
06 Aug 2015 22:02:01,370 INFO : Inserting KARS
06 Aug 2015 22:02:01,921 INFO : Inserting LARS
06 Aug 2015 22:02:02,466 INFO : Inserting MARS
06 Aug 2015 22:02:03,563 INFO : Inserting NARS
06 Aug 2015 22:02:04,109 INFO : Inserting QARS
06 Aug 2015 22:02:05,200 INFO : Inserting RARS
06 Aug 2015 22:02:05,738 INFO : Inserting SARS
06 Aug 2015 22:02:06,282 INFO : Inserting TARS
06 Aug 2015 22:02:06,824 INFO : Inserting TARSL2
06 Aug 2015 22:02:07,911 INFO : Inserting VARS
06 Aug 2015 22:02:08,454 INFO : Inserting WARS
06 Aug 2015 22:02:09,049 INFO : Inserting YARS
06 Aug 2015 22:02:09,659 INFO : Completed import of Skyline document from ARS_20141005_Kover_293T_2015-08-05_11-15-39.sky.zip
06 Aug 2015 22:02:09,666 DEBUG: Finished trying to load data file file:/data/labkey/files/Panorama%20Public/2015/Heesung%20-%20ARS_SEC_AP_MRM/@files/export/xar/experiments_and_runs.xar.exploded/Run2530/ARS_20141005_Kover_293T_2015-08-05_11-15-39.sky.zip into the system
06 Aug 2015 22:02:09,667 INFO : Done importing xar
06 Aug 2015 22:02:09,698 INFO : Loading pages and webpart properties
06 Aug 2015 22:02:09,740 INFO : Done importing pages and webpart properties
06 Aug 2015 22:02:09,740 INFO :
06 Aug 2015 22:02:09,740 INFO : Experiment import completed successfully.
06 Aug 2015 22:02:09,740 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.ExperimentImportTask'
06 Aug 2015 22:02:09,757 INFO : Starting to run task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask' at location 'webserver'
06 Aug 2015 22:02:09,757 INFO :
06 Aug 2015 22:02:09,757 INFO : Finishing up experiment copy.
06 Aug 2015 22:02:09,760 INFO : Creating a new TargetedMS experiment entry in targetedms.ExperimentAnnotations.
06 Aug 2015 22:02:09,837 INFO : Updating access URL to point to the new copy of the data.
06 Aug 2015 22:02:09,881 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.CopyExperimentFinalTask'