22 Jun 2024 20:12:48,225 DEBUG: Resetting Job ID: 54c326d5-133c-103d-86c9-dc22ffcd69ea
22 Jun 2024 20:12:48,243 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
22 Jun 2024 20:12:48,245 INFO : Starting to import Skyline document from 2024-0622-TBI Plasma EV_2024-06-22_20-13-48.sky.zip
22 Jun 2024 20:12:48,245 INFO : Expanding Enolase-PRTC.blib
22 Jun 2024 20:12:48,254 INFO : Expanding 2024-0622-TBI Plasma EV.skyd
22 Jun 2024 20:12:48,318 INFO : Expanding 2024-0622-TBI Plasma EV.sky
22 Jun 2024 20:12:48,321 INFO : Reading Skyline file, 2024-0622-TBI Plasma EV.sky, to determine if the TransitionChromInfos in the document should be stored...
22 Jun 2024 20:12:48,325 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
22 Jun 2024 20:12:48,325 WARN : The version of this Skyline document is 23.13. This is newer than the highest supported version 23.1
22 Jun 2024 20:12:48,327 INFO : 2% Done
22 Jun 2024 20:12:48,351 DEBUG: Starting to load chromatogram headers
22 Jun 2024 20:12:48,351 DEBUG: Done loading chromatogram headers
22 Jun 2024 20:12:48,518 INFO : Inserting iRT standards
22 Jun 2024 20:12:48,519 INFO : Inserting sp|P00924|ENO1_YEAST
22 Jun 2024 20:12:48,525 INFO : 6% Done
22 Jun 2024 20:12:48,542 INFO : 10% Done
22 Jun 2024 20:12:48,558 INFO : 13% Done
22 Jun 2024 20:12:48,570 INFO : 17% Done
22 Jun 2024 20:12:48,581 DEBUG: Total peptides inserted: 4
22 Jun 2024 20:12:48,581 INFO : Inserting PRTC
22 Jun 2024 20:12:48,585 INFO : 20% Done
22 Jun 2024 20:12:48,597 INFO : 23% Done
22 Jun 2024 20:12:48,608 INFO : 25% Done
22 Jun 2024 20:12:48,620 INFO : 28% Done
22 Jun 2024 20:12:48,631 INFO : 31% Done
22 Jun 2024 20:12:48,643 INFO : 34% Done
22 Jun 2024 20:12:48,654 INFO : 37% Done
22 Jun 2024 20:12:48,665 INFO : 40% Done
22 Jun 2024 20:12:48,676 INFO : 42% Done
22 Jun 2024 20:12:48,688 INFO : 46% Done
22 Jun 2024 20:12:48,700 INFO : 49% Done
22 Jun 2024 20:12:48,711 INFO : 52% Done
22 Jun 2024 20:12:48,723 INFO : 55% Done
22 Jun 2024 20:12:48,735 INFO : 57% Done
22 Jun 2024 20:12:48,744 DEBUG: Total peptides inserted: 14
22 Jun 2024 20:12:48,744 INFO : Inserting sp|P00761|TRYP_PIG
22 Jun 2024 20:12:48,749 INFO : 60% Done
22 Jun 2024 20:12:48,758 DEBUG: Total peptides inserted: 1
22 Jun 2024 20:12:48,758 INFO : Done parsing Skyline document.
22 Jun 2024 20:12:48,759 INFO : Updating previously imported data for 5 old sample files.
22 Jun 2024 20:12:48,759 DEBUG: Found data for the following old sample files in the QC folder:
22 Jun 2024 20:12:48,759 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-002.raw
22 Jun 2024 20:12:48,759 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-001.raw
22 Jun 2024 20:12:48,759 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-003.raw
22 Jun 2024 20:12:48,759 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G2-7555-02.raw
22 Jun 2024 20:12:48,759 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G1-7638-01.raw
22 Jun 2024 20:12:50,809 INFO : 98% Done
22 Jun 2024 20:12:50,809 INFO : Done updating previously imported sample file data.
22 Jun 2024 20:12:51,605 INFO : All the related sampleFiles for /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-22_19-44-06.sky.zip have been updated with newer data.
22 Jun 2024 20:12:51,605 INFO : Deleting /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-22_19-44-06.sky.zip
22 Jun 2024 20:12:51,605 INFO : Deleting directory /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-22_19-44-06
22 Jun 2024 20:12:51,606 INFO : Creating and populating temp tables for Proportion values
22 Jun 2024 20:12:51,611 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
22 Jun 2024 20:12:51,620 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
22 Jun 2024 20:12:51,628 INFO : Cleaning up temp tables
22 Jun 2024 20:12:52,128 INFO : Completed import of Skyline document from 2024-0622-TBI Plasma EV_2024-06-22_20-13-48.sky.zip
22 Jun 2024 20:12:52,130 INFO : 100% Done
22 Jun 2024 20:12:52,153 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'