25 Jun 2025 19:46:05,835 INFO : Validating data for a ProteomeXchange submission.
25 Jun 2025 19:46:05,836 INFO : =======================================
25 Jun 2025 19:46:05,848 DEBUG: Resetting Job ID: 3b607763-3465-103e-9c0d-1cc91aa94300
25 Jun 2025 19:46:05,864 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask' at location 'webserver'
25 Jun 2025 19:46:05,865 INFO : Validating data for experiment Id: 2077, validation Id: 1649
25 Jun 2025 19:46:05,913 INFO : Validating data for 9 Skyline documents in 1 folders
25 Jun 2025 19:46:06,104 INFO : Sample file validation for Skyline document: LIT_GPF_survey_newAlign_MMCC_boundaries_opttrans_nochick_2024-06-02_15-26-11.sky.zip
25 Jun 2025 19:46:06,104 INFO : Found all sample files.
25 Jun 2025 19:46:06,274 INFO : Sample file validation for Skyline document: OT_GPF_PRM_survey_MMCC_boundaries_opttrans_nochick_2024-06-03_14-36-08.sky.zip
25 Jun 2025 19:46:06,274 INFO : Found all sample files.
25 Jun 2025 19:46:06,325 INFO : Sample file validation for Skyline document: Exp_CSF_MMCC_quant_all_adjBound_opttrans_nochick_2024-06-03_14-53-02.sky.zip
25 Jun 2025 19:46:06,325 INFO : Found all sample files.
25 Jun 2025 19:46:06,361 INFO : Sample file validation for Skyline document: CSF_neurod105_assay_individuals_manual_2024-06-03_15-26-36.sky.zip
25 Jun 2025 19:46:06,361 INFO : Found all sample files.
25 Jun 2025 19:46:06,501 INFO : Sample file validation for Skyline document: 230124_p2_neo_30min_3500targets_opt_trans_pepleveldilution_2024-06-04_06-58-16.sky.zip
25 Jun 2025 19:46:06,501 INFO : Found all sample files.
25 Jun 2025 19:46:06,705 INFO : Sample file validation for Skyline document: 230305_ev2_prm_final_inj1_2024-06-04_07-32-10.sky.zip
25 Jun 2025 19:46:06,705 INFO : Found all sample files.
25 Jun 2025 19:46:06,752 INFO : Sample file validation for Skyline document: 240207_gpf_2024-06-04_10-24-18.sky.zip
25 Jun 2025 19:46:06,752 INFO : Found all sample files.
25 Jun 2025 19:46:06,787 INFO : Sample file validation for Skyline document: 2024-05 CSF LIT GPF-MSFragger-3.sky.zip
25 Jun 2025 19:46:06,787 INFO : Found all sample files.
25 Jun 2025 19:46:06,799 INFO : Sample file validation for Skyline document: Exp_CSF_GPF_A_2024-05-06_21-16-47.sky.zip
25 Jun 2025 19:46:06,800 INFO : Found all sample files.
25 Jun 2025 19:46:06,933 INFO : Modifications validation:
25 Jun 2025 19:46:06,933 INFO : VALID MODIFICATIONS:
25 Jun 2025 19:46:06,933 INFO : 11424: Carbamidomethyl (C): UNIMOD:4 - Carbamidomethyl
25 Jun 2025 19:46:06,933 INFO : CSF_neurod105_assay_individuals_manual_2024-06-03_15-26-36.sky.zip
25 Jun 2025 19:46:06,933 INFO : 240207_gpf_2024-06-04_10-24-18.sky.zip
25 Jun 2025 19:46:06,933 INFO : OT_GPF_PRM_survey_MMCC_boundaries_opttrans_nochick_2024-06-03_14-36-08.sky.zip
25 Jun 2025 19:46:06,933 INFO : 230305_ev2_prm_final_inj1_2024-06-04_07-32-10.sky.zip
25 Jun 2025 19:46:06,933 INFO : 2024-05 CSF LIT GPF-MSFragger-3.sky.zip
25 Jun 2025 19:46:06,933 INFO : Exp_CSF_MMCC_quant_all_adjBound_opttrans_nochick_2024-06-03_14-53-02.sky.zip
25 Jun 2025 19:46:06,933 INFO : LIT_GPF_survey_newAlign_MMCC_boundaries_opttrans_nochick_2024-06-02_15-26-11.sky.zip
25 Jun 2025 19:46:06,933 INFO : 230124_p2_neo_30min_3500targets_opt_trans_pepleveldilution_2024-06-04_06-58-16.sky.zip
25 Jun 2025 19:46:06,933 INFO : Exp_CSF_GPF_A_2024-05-06_21-16-47.sky.zip
25 Jun 2025 19:46:06,933 INFO : 11425: Oxidation (M): UNIMOD:35 - Oxidation
25 Jun 2025 19:46:06,933 INFO : 230305_ev2_prm_final_inj1_2024-06-04_07-32-10.sky.zip
25 Jun 2025 19:46:06,933 INFO : 230124_p2_neo_30min_3500targets_opt_trans_pepleveldilution_2024-06-04_06-58-16.sky.zip
25 Jun 2025 19:46:06,933 INFO : 11426: Label:13C(6)15N(2) (C-term K):
25 Jun 2025 19:46:06,933 INFO : 230305_ev2_prm_final_inj1_2024-06-04_07-32-10.sky.zip
25 Jun 2025 19:46:06,933 INFO : 11427: Label:13C(6)15N(4) (C-term R):
25 Jun 2025 19:46:06,933 INFO : 230305_ev2_prm_final_inj1_2024-06-04_07-32-10.sky.zip
25 Jun 2025 19:46:06,934 INFO : INVALID MODIFICATIONS (No Unimod ID):
25 Jun 2025 19:46:06,935 INFO : Validating spectral library: 240207_gpf.blib
25 Jun 2025 19:46:07,030 INFO : '240207_gpf' (240207_gpf.blib) library in 1 Skyline documents was built with 8 raw files; 1 peptide Id files. Status: VALID
25 Jun 2025 19:46:07,031 INFO : Validating spectral library: LIT_GPF_survey_newAlign_MMCC_boundaries_opttrans_nochick.blib
25 Jun 2025 19:46:07,190 INFO : 'LIT_GPF_survey_newAlign_MMCC_boundaries_opttrans_nochick' (LIT_GPF_survey_newAlign_MMCC_boundaries_opttrans_nochick.blib) library in 1 Skyline documents was built with 12 raw files; 6 peptide Id files. Status: VALID
25 Jun 2025 19:46:07,191 INFO : Validating spectral library: Exp_CSF_MMCC_compquant.elib
25 Jun 2025 19:46:07,418 INFO : 'Exp_CSF_MMCC_quant' (Exp_CSF_MMCC_compquant.elib) library in 1 Skyline documents was built with 27 raw files; 0 peptide Id files. Status: VALID
25 Jun 2025 19:46:07,419 INFO : Validating spectral library: ES904_Neo_PRTC.blib
25 Jun 2025 19:46:07,434 INFO : 'ES904 Neo PRTC' (ES904_Neo_PRTC.blib) library in 1 Skyline documents was built with 1 raw files; 0 peptide Id files. Status: Prosit / Koina Library
25 Jun 2025 19:46:07,434 INFO : MISSING FILES:
25 Jun 2025 19:46:07,434 INFO : Spectrum File: Prositintensity_prosit_publication_v1
25 Jun 2025 19:46:07,435 INFO : Validating spectral library: 230304_ev2pool_survey_reddb.blib
25 Jun 2025 19:46:07,509 INFO : '230305_ev2_prm' (230304_ev2pool_survey_reddb.blib) library in 1 Skyline documents was built with 6 raw files; 1 peptide Id files. Status: VALID
25 Jun 2025 19:46:07,510 INFO : Validating spectral library: 2024-05 CSF LIT GPF-MSFragger-3.blib
25 Jun 2025 19:46:07,662 INFO : '2024-05 CSF LIT GPF-MSFragger-3' (2024-05 CSF LIT GPF-MSFragger-3.blib) library in 1 Skyline documents was built with 12 raw files; 6 peptide Id files. Status: VALID
25 Jun 2025 19:46:07,663 INFO : Validating spectral library: Exp_CSF_GPF_A.elib
25 Jun 2025 19:46:07,710 INFO : 'Exp_CSF_GPF_A' (Exp_CSF_GPF_A.elib) library in 2 Skyline documents was built with 6 raw files; 0 peptide Id files. Status: VALID
25 Jun 2025 19:46:07,711 INFO : Validating spectral library: 230120_p2_neo_30min_reddb_dia1th_survey.blib
25 Jun 2025 19:46:07,785 INFO : '230120_p2_neo_30min_reddb_dia1th_survey (230124_p2_neo_30min_redb_50human50chicken_check)' (230120_p2_neo_30min_reddb_dia1th_survey.blib) library in 1 Skyline documents was built with 6 raw files; 1 peptide Id files. Status: VALID
25 Jun 2025 19:46:07,786 INFO : Validating spectral library: CSF_neurod105_assay_individuals_manual.blib
25 Jun 2025 19:46:07,874 INFO : 'CSF_neurod105_assay_individuals_manual' (CSF_neurod105_assay_individuals_manual.blib) library in 1 Skyline documents was built with 8 raw files; 1 peptide Id files. Status: VALID
25 Jun 2025 19:46:07,874 INFO : Spectral library validation complete.
25 Jun 2025 19:46:07,874 INFO : Data validation is complete. Status is Complete
25 Jun 2025 19:46:07,874 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask'