25 Nov 2023 10:28:47,691 INFO : Validating data for a ProteomeXchange submission.
25 Nov 2023 10:28:47,692 INFO : =======================================
25 Nov 2023 10:28:47,703 DEBUG: Resetting Job ID: 600fb662-6dee-103c-bc68-fea6ddf5ace0
25 Nov 2023 10:28:47,722 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask' at location 'webserver'
25 Nov 2023 10:28:47,723 INFO : Validating data for experiment Id: 1726, validation Id: 680
25 Nov 2023 10:28:47,746 INFO : Validating data for 1 Skyline documents in 1 folders
25 Nov 2023 10:28:47,793 INFO : Sample file validation for Skyline document: EDIA_SRM_to_panorama_2023-10-11_17-36-18.sky.zip
25 Nov 2023 10:28:47,793 INFO : Found all sample files.
25 Nov 2023 10:28:47,808 INFO : Modifications validation:
25 Nov 2023 10:28:47,808 INFO : VALID MODIFICATIONS:
25 Nov 2023 10:28:47,808 INFO : 5385: Carbamidomethyl (C): UNIMOD:4 - Carbamidomethyl
25 Nov 2023 10:28:47,808 INFO : EDIA_SRM_to_panorama_2023-10-11_17-36-18.sky.zip
25 Nov 2023 10:28:47,808 INFO : 5386: Label:13C(6)15N(2) (C-term K):
25 Nov 2023 10:28:47,808 INFO : EDIA_SRM_to_panorama_2023-10-11_17-36-18.sky.zip
25 Nov 2023 10:28:47,808 INFO : 5387: Label:13C(6)15N(4) (C-term R):
25 Nov 2023 10:28:47,808 INFO : EDIA_SRM_to_panorama_2023-10-11_17-36-18.sky.zip
25 Nov 2023 10:28:47,809 INFO : INVALID MODIFICATIONS (No Unimod ID):
25 Nov 2023 10:28:47,810 INFO : Validating spectral library: T1D_All_Syn_Pep.blib
25 Nov 2023 10:28:47,818 INFO : 'T1D_All_Syn_Pep' (T1D_All_Syn_Pep.blib) library in 1 Skyline documents was built with 4 raw files; 0 peptide Id files. Status: Missing spectrum files. Missing peptide ID file names in the .blib file.
25 Nov 2023 10:28:47,819 INFO : MISSING FILES:
25 Nov 2023 10:28:47,819 INFO : Spectrum File: 150701_serum_synthetic_peptide_BothDIPP_iRT_1.raw
25 Nov 2023 10:28:47,819 INFO : Spectrum File: 150701_serum_synthetic_peptide_BothDIPP_iRT_2.raw
25 Nov 2023 10:28:47,819 INFO : Spectrum File: 150226_FF338940_1pmol_30min_gr.raw
25 Nov 2023 10:28:47,819 INFO : Spectrum File: 150528_Robert_200fmol.raw
25 Nov 2023 10:28:47,819 INFO : Validating spectral library: BetaCatenin.blib
25 Nov 2023 10:28:47,824 INFO : 'BetaCatenin' (BetaCatenin.blib) library in 1 Skyline documents was built with 1 raw files; 1 peptide Id files. Status: Missing spectrum and peptide Id files.
25 Nov 2023 10:28:47,825 INFO : MISSING FILES:
25 Nov 2023 10:28:47,825 INFO : Spectrum File: 200511_betaCateninSynPeps1ul01.raw
25 Nov 2023 10:28:47,825 INFO : Peptide Id File: 200511_betaCateninSynPeps1ul01.msf
25 Nov 2023 10:28:47,825 INFO : Validating spectral library: BC1713.blib
25 Nov 2023 10:28:47,829 INFO : 'BC1713' (BC1713.blib) library in 1 Skyline documents was built with 1 raw files; 0 peptide Id files. Status: Missing spectrum files. Missing peptide ID file names in the .blib file.
25 Nov 2023 10:28:47,829 INFO : MISSING FILES:
25 Nov 2023 10:28:47,829 INFO : Spectrum File: 190325_BC101713_1ul_1.raw
25 Nov 2023 10:28:47,830 INFO : Validating spectral library: PQ5002.blib
25 Nov 2023 10:28:47,833 INFO : 'PQ5002' (PQ5002.blib) library in 1 Skyline documents was built with 1 raw files; 0 peptide Id files. Status: Missing spectrum files. Missing peptide ID file names in the .blib file.
25 Nov 2023 10:28:47,833 INFO : MISSING FILES:
25 Nov 2023 10:28:47,833 INFO : Spectrum File: 180905_PQ500_50min_real1p5ul.raw
25 Nov 2023 10:28:47,834 INFO : Validating spectral library: THIS.blib
25 Nov 2023 10:28:47,839 INFO : 'THIS' (THIS.blib) library in 1 Skyline documents was built with 1 raw files; 1 peptide Id files. Status: Missing spectrum and peptide Id files.
25 Nov 2023 10:28:47,839 INFO : MISSING FILES:
25 Nov 2023 10:28:47,839 INFO : Spectrum File: 191228_SynPeps_01.raw
25 Nov 2023 10:28:47,839 INFO : Peptide Id File: 191228_SynPeps_01.msf
25 Nov 2023 10:28:47,840 INFO : Validating spectral library: T1D_master.blib
25 Nov 2023 10:28:47,847 INFO : 'T1D_master' (T1D_master.blib) library in 1 Skyline documents was built with 3 raw files; 0 peptide Id files. Status: Missing spectrum files. Missing peptide ID file names in the .blib file.
25 Nov 2023 10:28:47,847 INFO : MISSING FILES:
25 Nov 2023 10:28:47,847 INFO : Spectrum File: 181025_SynPeps_Sera_01.raw
25 Nov 2023 10:28:47,847 INFO : Spectrum File: 181025_SynPeps_Sera_02.raw
25 Nov 2023 10:28:47,847 INFO : Spectrum File: 181025_SynPeps_Sera_03_IBP3.raw
25 Nov 2023 10:28:47,848 INFO : Validating spectral library: TH17newer.blib
25 Nov 2023 10:28:47,872 INFO : 'Th17newer' (TH17newer.blib) library in 1 Skyline documents was built with 1 raw files; 0 peptide Id files. Status: Missing spectrum files. Missing peptide ID file names in the .blib file.
25 Nov 2023 10:28:47,872 INFO : MISSING FILES:
25 Nov 2023 10:28:47,872 INFO : Spectrum File: 20180119_SynPep_Th17plus_1ul.raw
25 Nov 2023 10:28:47,873 INFO : Validating spectral library: Sep20Extra.blib
25 Nov 2023 10:28:47,881 INFO : 'Sep20Extra' (Sep20Extra.blib) library in 1 Skyline documents was built with 2 raw files; 2 peptide Id files. Status: Missing spectrum and peptide Id files.
25 Nov 2023 10:28:47,881 INFO : MISSING FILES:
25 Nov 2023 10:28:47,881 INFO : Spectrum File: 200917_RM_JunePIMS_01.raw
25 Nov 2023 10:28:47,881 INFO : Spectrum File: 200917_RM_SeptPIMS_01.raw
25 Nov 2023 10:28:47,881 INFO : Peptide Id File: 200917_RM_septPIMS_01fullDB.pdResult
25 Nov 2023 10:28:47,881 INFO : Peptide Id File: 200917_RM_septPIMS_01rpt.pdResult
25 Nov 2023 10:28:47,882 INFO : Validating spectral library: PANC_Dec2018x.blib
25 Nov 2023 10:28:47,889 INFO : 'PANC_Dec2018' (PANC_Dec2018x.blib) library in 1 Skyline documents was built with 4 raw files; 0 peptide Id files. Status: Missing spectrum files. Missing peptide ID file names in the .blib file.
25 Nov 2023 10:28:47,889 INFO : MISSING FILES:
25 Nov 2023 10:28:47,889 INFO : Spectrum File: 051218_EV_SRM_heavy_45min_1.raw
25 Nov 2023 10:28:47,889 INFO : Spectrum File: 051218_EV_SRMheavy_60min_1.raw
25 Nov 2023 10:28:47,889 INFO : Spectrum File: 051218_EV_SRMHeavyDil_45min.raw
25 Nov 2023 10:28:47,890 INFO : Spectrum File: 051218_EV_SRMHeavyDil_60min.raw
25 Nov 2023 10:28:47,890 INFO : Validating spectral library: PQ500.blib
25 Nov 2023 10:28:47,895 INFO : 'PQ500' (PQ500.blib) library in 1 Skyline documents was built with 2 raw files; 0 peptide Id files. Status: Missing spectrum files. Missing peptide ID file names in the .blib file.
25 Nov 2023 10:28:47,895 INFO : MISSING FILES:
25 Nov 2023 10:28:47,895 INFO : Spectrum File: 180711_Ref_Pep_Rep1.raw
25 Nov 2023 10:28:47,895 INFO : Spectrum File: 180711_Ref_Pep_Rep2.raw
25 Nov 2023 10:28:47,896 INFO : Validating spectral library: BC101613.blib
25 Nov 2023 10:28:47,960 INFO : 'BC101613' (BC101613.blib) library in 1 Skyline documents was built with 2 raw files; 0 peptide Id files. Status: Missing spectrum files. Missing peptide ID file names in the .blib file.
25 Nov 2023 10:28:47,960 INFO : MISSING FILES:
25 Nov 2023 10:28:47,961 INFO : Spectrum File: 190311_RM_synPepsBC101613_1ul.raw
25 Nov 2023 10:28:47,961 INFO : Spectrum File: 190311_RM_synPepsBC101613_2ul.raw
25 Nov 2023 10:28:47,961 INFO : Validating spectral library: STEM2.blib
25 Nov 2023 10:28:47,969 INFO : 'STEM2' (STEM2.blib) library in 1 Skyline documents was built with 3 raw files; 0 peptide Id files. Status: Missing spectrum files. Missing peptide ID file names in the .blib file.
25 Nov 2023 10:28:47,969 INFO : MISSING FILES:
25 Nov 2023 10:28:47,969 INFO : Spectrum File: 190508_Stem_Cells_Syn_Mix_100fmol_R1.raw
25 Nov 2023 10:28:47,969 INFO : Spectrum File: 190508_Stem_Cells_Syn_Mix_100fmol_R2.raw
25 Nov 2023 10:28:47,969 INFO : Spectrum File: 190508_Stem_Cells_Syn_Mix_100fmol_R3.raw
25 Nov 2023 10:28:47,969 INFO : Spectral library validation complete.
25 Nov 2023 10:28:47,970 INFO : Data validation is complete. Status is IncompleteMetadata
25 Nov 2023 10:28:47,970 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask'