22 Jun 2023 21:22:51,601 INFO : Copying experiment "Targeted Proteomics Quantitation of NRF2 and Predictive Biomarkers in HNSCC" from folder /WUSTL - Major Lab/Eclipse/NRF2_HNSCC to /Panorama Public/2023/WUSTL Major Lab - NRF2_HNSCC

22 Jun 2023 21:22:51,601 INFO : =======================================

22 Jun 2023 21:22:51,619 DEBUG: Resetting Job ID: af74eb67-f3aa-103b-afc6-fea6ddf51ba4

22 Jun 2023 21:22:51,642 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

22 Jun 2023 21:22:51,642 INFO : 

22 Jun 2023 21:22:51,642 INFO : Exporting experiment.

22 Jun 2023 21:52:24,760 INFO : Exporting files metadata.

22 Jun 2023 21:52:24,760 DEBUG: [/WUSTL - Major Lab/Eclipse/NRF2_HNSCC]  Writing files metadata to /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL Major Lab - NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export

22 Jun 2023 21:52:24,763 INFO : 

22 Jun 2023 21:52:24,763 INFO : Experiment export completed successfully.

22 Jun 2023 21:52:24,763 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

22 Jun 2023 21:53:14,322 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

22 Jun 2023 21:53:14,322 INFO : 

22 Jun 2023 21:53:14,322 INFO : Importing experiment.

22 Jun 2023 21:53:14,324 DEBUG: [/Panorama Public/2023/WUSTL Major Lab - NRF2_HNSCC] Importing folder properties from: /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL Major Lab - NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export

22 Jun 2023 21:53:14,324 INFO : Loading folder properties (folder type, settings and active modules)

22 Jun 2023 21:53:14,325 DEBUG: [/Panorama Public/2023/WUSTL Major Lab - NRF2_HNSCC] Folder type: Targeted MS

22 Jun 2023 21:53:14,325 DEBUG: [/Panorama Public/2023/WUSTL Major Lab - NRF2_HNSCC] Active modules: PanoramaPublic, Wiki, Experiment, API, Query, Announcements, Pipeline, Assay, MS2, Core, Search, FileContent, Issues, TargetedMS

22 Jun 2023 21:53:14,382 INFO : Done importing folder properties (folder type, settings and active modules)

22 Jun 2023 21:53:14,383 INFO : Loading container specific module properties

22 Jun 2023 21:53:14,386 INFO : Done importing container specific module properties

22 Jun 2023 21:53:14,387 INFO : Loading etl definitions

22 Jun 2023 21:53:14,388 INFO : Loading wikis

22 Jun 2023 21:53:14,389 INFO : 0 wikis imported

22 Jun 2023 21:53:14,389 INFO : Done importing wikis

22 Jun 2023 21:53:14,389 INFO : Starting to copy files

22 Jun 2023 21:55:51,149 INFO : 7 files copied, now copying SCC90_SCC152_SCC154_2023-06-12_13-00-29.sky.zip

22 Jun 2023 21:58:04,019 INFO : 17 files copied, now copying FFPE_HPV.skyl

22 Jun 2023 21:58:04,583 INFO : 20 files copied, now copying CELL_LINES.sky

22 Jun 2023 21:59:16,954 INFO : Copied 24 files

22 Jun 2023 21:59:16,954 INFO : Ensuring exp.data rows exist for imported files

22 Jun 2023 21:59:17,058 INFO : Starting Sample Type and Data Class import

22 Jun 2023 21:59:17,058 INFO : No types XAR file to process.

22 Jun 2023 21:59:17,058 INFO : Finished importing Sample Types and Data Classes

22 Jun 2023 21:59:17,059 INFO : Loading xar

22 Jun 2023 22:02:11,621 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11702:TargetedMS.ImportSkyZip'

22 Jun 2023 22:02:11,623 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11702:TargetedMS.ImportSkyZip.Core'

22 Jun 2023 22:02:11,625 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-11702:TargetedMS.ImportSkyZip.Output'

22 Jun 2023 22:02:11,625 DEBUG: Protocol import complete

22 Jun 2023 22:02:11,642 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-11702:Targeted+Proteomics+Quantitation+of+NRF2+and+Predictive+Biomarkers+in+HNSCC'

22 Jun 2023 22:02:11,642 DEBUG: Experiment/Run group import complete

22 Jun 2023 22:02:11,651 DEBUG: Protocol action set import complete

22 Jun 2023 22:02:11,658 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11702:TargetedMS.ImportSkyZip'

22 Jun 2023 22:02:11,663 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11702:d0f89a88-eb70-103b-82c0-fea6ddf5f252'

22 Jun 2023 22:02:11,666 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11702:7dff6dd6-eb70-103b-82c0-fea6ddf5f252'

22 Jun 2023 22:02:11,666 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11702:TargetedMS.ImportSkyZip.Core'

22 Jun 2023 22:02:11,668 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11702:TargetedMS.ImportSkyZip.Output'

22 Jun 2023 22:02:11,668 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11702:d0f8a647-eb70-103b-82c0-fea6ddf5f252'

22 Jun 2023 22:02:11,673 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11702:TargetedMS.ImportSkyZip'

22 Jun 2023 22:02:11,677 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11702:536e6329-eb73-103b-82c0-fea6ddf5f252'

22 Jun 2023 22:02:11,679 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11702:e89cefbe-eb72-103b-82c0-fea6ddf5f252'

22 Jun 2023 22:02:11,679 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11702:TargetedMS.ImportSkyZip.Core'

22 Jun 2023 22:02:11,681 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11702:TargetedMS.ImportSkyZip.Output'

22 Jun 2023 22:02:11,681 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11702:bd51828b-eb73-103b-82c0-fea6ddf5f252'

22 Jun 2023 22:02:11,686 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11702:TargetedMS.ImportSkyZip'

22 Jun 2023 22:02:11,689 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11702:0e922650-eb75-103b-82c0-fea6ddf5f252'

22 Jun 2023 22:02:11,692 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11702:bd519f9c-eb73-103b-82c0-fea6ddf5f252'

22 Jun 2023 22:02:11,692 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11702:TargetedMS.ImportSkyZip.Core'

22 Jun 2023 22:02:11,693 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11702:TargetedMS.ImportSkyZip.Output'

22 Jun 2023 22:02:11,693 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11702:44149934-eb75-103b-82c0-fea6ddf5f252'

22 Jun 2023 22:02:11,698 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11702:TargetedMS.ImportSkyZip'

22 Jun 2023 22:02:11,702 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-11702:38064c27-eb79-103b-82c0-fea6ddf5f252'

22 Jun 2023 22:02:11,705 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-11702:38063e62-eb79-103b-82c0-fea6ddf5f252'

22 Jun 2023 22:02:11,705 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11702:TargetedMS.ImportSkyZip.Core'

22 Jun 2023 22:02:11,707 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-11702:TargetedMS.ImportSkyZip.Output'

22 Jun 2023 22:02:11,707 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-11702:38065087-eb79-103b-82c0-fea6ddf5f252'

22 Jun 2023 22:02:11,709 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161073/FFPE_HPV_2023-06-12_11-58-29/FFPE_HPV.skyd into the system

22 Jun 2023 22:02:11,709 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161073/FFPE_HPV_2023-06-12_11-58-29/FFPE_HPV.skyd into the system

22 Jun 2023 22:02:11,709 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161073/FFPE_HPV_2023-06-12_11-58-29.sky.zip into the system

22 Jun 2023 22:02:11,710 INFO : Starting import from FFPE_HPV_2023-06-12_11-58-29.sky.zip

22 Jun 2023 22:02:11,713 INFO : Starting to import Skyline document from FFPE_HPV_2023-06-12_11-58-29.sky.zip

22 Jun 2023 22:02:12,330 INFO : Expanding FFPE_HPV.skyd

22 Jun 2023 22:02:38,053 INFO : Expanding FFPE_HPV.sky.view

22 Jun 2023 22:02:38,054 INFO : Expanding FFPE_HPV.sky

22 Jun 2023 22:02:38,107 INFO : Expanding FFPE_HPV.skyl

22 Jun 2023 22:02:38,121 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

22 Jun 2023 22:02:38,751 DEBUG: Starting to load chromatogram headers

22 Jun 2023 22:02:38,766 DEBUG: Done loading chromatogram headers

22 Jun 2023 22:02:38,967 INFO : Inserting TNFRSF4

22 Jun 2023 22:02:38,977 INFO : 1% Done

22 Jun 2023 22:02:39,152 INFO : 2% Done

22 Jun 2023 22:02:39,227 DEBUG: Total peptides inserted: 4

22 Jun 2023 22:02:39,227 INFO : Inserting NQO1

22 Jun 2023 22:02:39,314 INFO : 3% Done

22 Jun 2023 22:02:39,390 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:39,390 INFO : Inserting CES1

22 Jun 2023 22:02:39,457 INFO : 4% Done

22 Jun 2023 22:02:39,531 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:39,532 INFO : Inserting MAP1B

22 Jun 2023 22:02:39,625 INFO : 5% Done

22 Jun 2023 22:02:39,699 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:39,699 INFO : Inserting NAMPT

22 Jun 2023 22:02:39,786 INFO : 6% Done

22 Jun 2023 22:02:39,861 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:39,861 INFO : Inserting NDUFAF4

22 Jun 2023 22:02:39,950 INFO : 7% Done

22 Jun 2023 22:02:40,025 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:40,025 INFO : Inserting TP63

22 Jun 2023 22:02:40,135 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:40,135 INFO : Inserting E7

22 Jun 2023 22:02:40,142 INFO : 8% Done

22 Jun 2023 22:02:40,301 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:40,301 INFO : Inserting GAPDH

22 Jun 2023 22:02:40,342 INFO : 9% Done

22 Jun 2023 22:02:40,508 INFO : 10% Done

22 Jun 2023 22:02:40,661 DEBUG: Total peptides inserted: 7

22 Jun 2023 22:02:40,661 INFO : Inserting NFE2L2

22 Jun 2023 22:02:40,668 INFO : 11% Done

22 Jun 2023 22:02:40,831 INFO : 12% Done

22 Jun 2023 22:02:40,992 INFO : 13% Done

22 Jun 2023 22:02:41,067 DEBUG: Total peptides inserted: 5

22 Jun 2023 22:02:41,067 INFO : Inserting HMOX1

22 Jun 2023 22:02:41,159 INFO : 14% Done

22 Jun 2023 22:02:41,233 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:41,233 INFO : Inserting CDKN2A

22 Jun 2023 22:02:41,317 INFO : 15% Done

22 Jun 2023 22:02:41,392 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:41,392 INFO : Inserting ALDH3A1

22 Jun 2023 22:02:41,481 INFO : 16% Done

22 Jun 2023 22:02:41,637 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:41,637 INFO : Inserting CCND1

22 Jun 2023 22:02:41,644 INFO : 17% Done

22 Jun 2023 22:02:41,828 INFO : 18% Done

22 Jun 2023 22:02:41,909 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:41,909 INFO : Inserting DHFR

22 Jun 2023 22:02:42,074 INFO : 19% Done

22 Jun 2023 22:02:42,152 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:42,152 INFO : Inserting FOXP3

22 Jun 2023 22:02:42,244 INFO : 20% Done

22 Jun 2023 22:02:42,414 DEBUG: Total peptides inserted: 4

22 Jun 2023 22:02:42,414 INFO : Inserting MGST1

22 Jun 2023 22:02:42,422 INFO : 21% Done

22 Jun 2023 22:02:42,564 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:42,564 INFO : Inserting SQSTM1

22 Jun 2023 22:02:42,571 INFO : 22% Done

22 Jun 2023 22:02:42,744 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:42,744 INFO : Inserting BLVRB

22 Jun 2023 22:02:42,751 INFO : 23% Done

22 Jun 2023 22:02:42,997 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:42,997 INFO : Inserting GPX4

22 Jun 2023 22:02:43,003 INFO : 24% Done

22 Jun 2023 22:02:43,166 INFO : 25% Done

22 Jun 2023 22:02:43,240 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:43,241 INFO : Inserting MAFG

22 Jun 2023 22:02:43,478 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:43,478 INFO : Inserting AKR1B10

22 Jun 2023 22:02:43,485 INFO : 26% Done

22 Jun 2023 22:02:43,647 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:43,648 INFO : Inserting CABYR

22 Jun 2023 22:02:43,655 INFO : 27% Done

22 Jun 2023 22:02:43,733 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:02:43,733 INFO : Inserting GSR

22 Jun 2023 22:02:43,852 INFO : 28% Done

22 Jun 2023 22:02:44,008 DEBUG: Total peptides inserted: 4

22 Jun 2023 22:02:44,008 INFO : Inserting MYC

22 Jun 2023 22:02:44,014 INFO : 29% Done

22 Jun 2023 22:02:44,177 INFO : 30% Done

22 Jun 2023 22:02:44,252 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:44,252 INFO : Inserting TP53

22 Jun 2023 22:02:44,338 INFO : 31% Done

22 Jun 2023 22:02:44,494 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:44,494 INFO : Inserting PIK3CA

22 Jun 2023 22:02:44,501 INFO : 32% Done

22 Jun 2023 22:02:44,665 INFO : 33% Done

22 Jun 2023 22:02:44,740 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:44,740 INFO : Inserting ME1

22 Jun 2023 22:02:44,827 INFO : 34% Done

22 Jun 2023 22:02:44,985 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:44,985 INFO : Inserting SOX2

22 Jun 2023 22:02:44,992 INFO : 35% Done

22 Jun 2023 22:02:45,147 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:45,147 INFO : Inserting GCLC

22 Jun 2023 22:02:45,154 INFO : 36% Done

22 Jun 2023 22:02:45,320 INFO : 37% Done

22 Jun 2023 22:02:45,395 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:45,395 INFO : Inserting GCLM

22 Jun 2023 22:02:45,489 INFO : 38% Done

22 Jun 2023 22:02:45,566 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:45,566 INFO : Inserting CUL3

22 Jun 2023 22:02:45,738 INFO : 39% Done

22 Jun 2023 22:02:45,833 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:45,833 INFO : Inserting KEAP1

22 Jun 2023 22:02:45,942 INFO : 40% Done

22 Jun 2023 22:02:46,110 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:46,110 INFO : Inserting PTGR1

22 Jun 2023 22:02:46,117 INFO : 41% Done

22 Jun 2023 22:02:46,279 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:46,279 INFO : Inserting TXNRD1

22 Jun 2023 22:02:46,286 INFO : 42% Done

22 Jun 2023 22:02:46,446 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:46,446 INFO : Inserting ZNF746

22 Jun 2023 22:02:46,454 INFO : 43% Done

22 Jun 2023 22:02:46,614 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:46,615 INFO : Inserting ABHD4

22 Jun 2023 22:02:46,621 INFO : 44% Done

22 Jun 2023 22:02:46,700 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:02:46,700 INFO : Inserting SRXN1

22 Jun 2023 22:02:46,788 INFO : 45% Done

22 Jun 2023 22:02:46,935 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:46,936 INFO : Inserting ADD2

22 Jun 2023 22:02:46,942 INFO : 46% Done

22 Jun 2023 22:02:47,105 INFO : 47% Done

22 Jun 2023 22:02:47,207 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:47,207 INFO : Inserting AKR1B1

22 Jun 2023 22:02:47,321 INFO : 48% Done

22 Jun 2023 22:02:47,428 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:47,428 INFO : Inserting ALDH3A2

22 Jun 2023 22:02:47,530 INFO : 49% Done

22 Jun 2023 22:02:47,698 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:47,698 INFO : Inserting BACH1

22 Jun 2023 22:02:47,804 INFO : 50% Done

22 Jun 2023 22:02:47,902 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:47,902 INFO : Inserting BAG2

22 Jun 2023 22:02:48,041 INFO : 51% Done

22 Jun 2023 22:02:48,227 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:48,228 INFO : Inserting CCL5

22 Jun 2023 22:02:48,236 INFO : 52% Done

22 Jun 2023 22:02:48,428 INFO : 53% Done

22 Jun 2023 22:02:48,510 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:48,510 INFO : Inserting CD4

22 Jun 2023 22:02:48,604 INFO : 54% Done

22 Jun 2023 22:02:48,765 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:48,765 INFO : Inserting CD8A

22 Jun 2023 22:02:48,773 INFO : 55% Done

22 Jun 2023 22:02:48,936 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:48,936 INFO : Inserting CTLA4

22 Jun 2023 22:02:48,943 INFO : 56% Done

22 Jun 2023 22:02:49,104 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:49,104 INFO : Inserting CYP4F11

22 Jun 2023 22:02:49,111 INFO : 57% Done

22 Jun 2023 22:02:49,276 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:49,276 INFO : Inserting DNAJB4

22 Jun 2023 22:02:49,284 INFO : 58% Done

22 Jun 2023 22:02:49,455 INFO : 59% Done

22 Jun 2023 22:02:49,534 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:49,534 INFO : Inserting EGFR

22 Jun 2023 22:02:49,703 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:49,703 INFO : Inserting EPHX1

22 Jun 2023 22:02:49,710 INFO : 60% Done

22 Jun 2023 22:02:49,872 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:49,872 INFO : Inserting FECH

22 Jun 2023 22:02:49,879 INFO : 61% Done

22 Jun 2023 22:02:50,036 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:50,036 INFO : Inserting GSTA4

22 Jun 2023 22:02:50,043 INFO : 62% Done

22 Jun 2023 22:02:50,204 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:50,204 INFO : Inserting GSTM[124]

22 Jun 2023 22:02:50,212 INFO : 63% Done

22 Jun 2023 22:02:50,290 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:02:50,290 INFO : Inserting GSTM1

22 Jun 2023 22:02:50,381 INFO : 64% Done

22 Jun 2023 22:02:50,461 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:50,461 INFO : Inserting GSTM3

22 Jun 2023 22:02:50,553 INFO : 65% Done

22 Jun 2023 22:02:50,629 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:50,629 INFO : Inserting GSTM4

22 Jun 2023 22:02:50,715 INFO : 66% Done

22 Jun 2023 22:02:50,873 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:50,873 INFO : Inserting HTATIP2

22 Jun 2023 22:02:50,879 INFO : 67% Done

22 Jun 2023 22:02:51,044 INFO : 68% Done

22 Jun 2023 22:02:51,119 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:51,119 INFO : Inserting IDH1

22 Jun 2023 22:02:51,206 INFO : 69% Done

22 Jun 2023 22:02:51,361 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:51,361 INFO : Inserting LDHA

22 Jun 2023 22:02:51,367 INFO : 70% Done

22 Jun 2023 22:02:51,521 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:51,521 INFO : Inserting MAP2

22 Jun 2023 22:02:51,607 INFO : 71% Done

22 Jun 2023 22:02:51,683 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:51,683 INFO : Inserting PGD

22 Jun 2023 22:02:51,770 INFO : 72% Done

22 Jun 2023 22:02:51,925 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:51,925 INFO : Inserting PIR

22 Jun 2023 22:02:51,931 INFO : 73% Done

22 Jun 2023 22:02:52,076 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:52,076 INFO : Inserting PRDX1

22 Jun 2023 22:02:52,083 INFO : 74% Done

22 Jun 2023 22:02:52,307 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:52,307 INFO : Inserting SLC7A11

22 Jun 2023 22:02:52,395 INFO : 75% Done

22 Jun 2023 22:02:52,550 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:52,550 INFO : Inserting TALDO1

22 Jun 2023 22:02:52,557 INFO : 76% Done

22 Jun 2023 22:02:52,712 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:52,712 INFO : Inserting TKT

22 Jun 2023 22:02:52,719 INFO : 77% Done

22 Jun 2023 22:02:52,955 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:52,956 INFO : 78% Done

22 Jun 2023 22:02:52,956 INFO : Inserting TP73

22 Jun 2023 22:02:53,113 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:53,113 INFO : Inserting TXN

22 Jun 2023 22:02:53,119 INFO : 79% Done

22 Jun 2023 22:02:53,194 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:02:53,194 INFO : Inserting UCHL1

22 Jun 2023 22:02:53,282 INFO : 80% Done

22 Jun 2023 22:02:53,347 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:53,347 INFO : Inserting CD274

22 Jun 2023 22:02:53,437 INFO : 81% Done

22 Jun 2023 22:02:53,559 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:53,559 INFO : Inserting SHMT2

22 Jun 2023 22:02:53,757 INFO : 82% Done

22 Jun 2023 22:02:53,840 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:53,840 INFO : Inserting PSAT1

22 Jun 2023 22:02:53,926 INFO : 83% Done

22 Jun 2023 22:02:54,085 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:54,085 INFO : Inserting G6PD

22 Jun 2023 22:02:54,092 INFO : 84% Done

22 Jun 2023 22:02:54,254 INFO : 85% Done

22 Jun 2023 22:02:54,329 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:54,329 INFO : Inserting AKR1C2

22 Jun 2023 22:02:54,413 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:02:54,413 INFO : Inserting ABCB6

22 Jun 2023 22:02:54,420 INFO : 86% Done

22 Jun 2023 22:02:54,584 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:54,584 INFO : Inserting AKR1C[134]

22 Jun 2023 22:02:54,591 INFO : 87% Done

22 Jun 2023 22:02:54,671 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:02:54,671 INFO : Inserting AKR1C3

22 Jun 2023 22:02:54,756 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:02:54,756 INFO : Inserting AKR1D1

22 Jun 2023 22:02:54,769 INFO : 88% Done

22 Jun 2023 22:02:54,931 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:54,931 INFO : Inserting CBR1

22 Jun 2023 22:02:55,010 INFO : 89% Done

22 Jun 2023 22:02:55,089 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:55,089 INFO : Inserting CBR3

22 Jun 2023 22:02:55,182 INFO : 90% Done

22 Jun 2023 22:02:55,342 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:55,342 INFO : Inserting NDUFAF3

22 Jun 2023 22:02:55,349 INFO : 91% Done

22 Jun 2023 22:02:55,514 INFO : 92% Done

22 Jun 2023 22:02:55,588 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:55,588 INFO : Inserting NR2F6

22 Jun 2023 22:02:55,674 INFO : 93% Done

22 Jun 2023 22:02:55,750 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:55,750 INFO : Inserting TRIM16

22 Jun 2023 22:02:55,838 INFO : 94% Done

22 Jun 2023 22:02:55,909 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:55,909 INFO : Inserting UGDH

22 Jun 2023 22:02:55,996 INFO : 95% Done

22 Jun 2023 22:02:56,071 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:02:56,071 INFO : Inserting CD273

22 Jun 2023 22:02:56,151 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:02:56,152 INFO : Inserting CD279

22 Jun 2023 22:02:56,158 INFO : 96% Done

22 Jun 2023 22:02:56,322 INFO : 97% Done

22 Jun 2023 22:02:56,397 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:56,397 INFO : Inserting E6

22 Jun 2023 22:02:56,483 INFO : 98% Done

22 Jun 2023 22:02:56,637 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:02:56,639 INFO : Done parsing Skyline document.

22 Jun 2023 22:02:56,655 INFO : Creating and populating temp tables for Proportion values

22 Jun 2023 22:02:56,806 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

22 Jun 2023 22:02:57,260 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

22 Jun 2023 22:02:57,425 INFO : Cleaning up temp tables

22 Jun 2023 22:02:57,679 INFO : Completed import of Skyline document from FFPE_HPV_2023-06-12_11-58-29.sky.zip

22 Jun 2023 22:02:57,681 INFO : 100% Done

22 Jun 2023 22:02:57,685 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161073/FFPE_HPV_2023-06-12_11-58-29.sky.zip into the system

22 Jun 2023 22:02:57,685 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161075/CELL_LINES_2023-06-12_12-06-35/CELL_LINES.skyd into the system

22 Jun 2023 22:02:57,685 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161075/CELL_LINES_2023-06-12_12-06-35/CELL_LINES.skyd into the system

22 Jun 2023 22:02:57,685 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161075/CELL_LINES_2023-06-12_12-06-35.sky.zip into the system

22 Jun 2023 22:02:57,686 INFO : Starting import from CELL_LINES_2023-06-12_12-06-35.sky.zip

22 Jun 2023 22:02:57,688 INFO : Starting to import Skyline document from CELL_LINES_2023-06-12_12-06-35.sky.zip

22 Jun 2023 22:02:58,739 INFO : Expanding CELL_LINES.skyd

22 Jun 2023 22:03:44,348 INFO : Expanding CELL_LINES.sky.view

22 Jun 2023 22:03:44,349 INFO : Expanding CELL_LINES.sky

22 Jun 2023 22:03:44,422 INFO : Expanding CELL_LINES.skyl

22 Jun 2023 22:03:44,424 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

22 Jun 2023 22:03:45,502 DEBUG: Starting to load chromatogram headers

22 Jun 2023 22:03:45,527 DEBUG: Done loading chromatogram headers

22 Jun 2023 22:03:45,743 INFO : Inserting TNFRSF4

22 Jun 2023 22:03:45,749 INFO : 1% Done

22 Jun 2023 22:03:45,989 DEBUG: Total peptides inserted: 4

22 Jun 2023 22:03:45,989 INFO : Inserting NQO1

22 Jun 2023 22:03:45,999 INFO : 2% Done

22 Jun 2023 22:03:46,244 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:03:46,244 INFO : Inserting CES1

22 Jun 2023 22:03:46,260 INFO : 3% Done

22 Jun 2023 22:03:46,375 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:03:46,375 INFO : Inserting MAP1B

22 Jun 2023 22:03:46,391 INFO : 4% Done

22 Jun 2023 22:03:46,649 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:46,649 INFO : Inserting NAMPT

22 Jun 2023 22:03:46,660 INFO : 5% Done

22 Jun 2023 22:03:46,920 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:03:46,921 INFO : Inserting NDUFAF4

22 Jun 2023 22:03:46,931 INFO : 6% Done

22 Jun 2023 22:03:47,266 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:47,267 INFO : Inserting TP63

22 Jun 2023 22:03:47,272 INFO : 7% Done

22 Jun 2023 22:03:47,385 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:03:47,385 INFO : Inserting E7

22 Jun 2023 22:03:47,433 INFO : 8% Done

22 Jun 2023 22:03:47,553 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:03:47,553 INFO : Inserting GAPDH

22 Jun 2023 22:03:47,726 INFO : 9% Done

22 Jun 2023 22:03:47,979 INFO : 10% Done

22 Jun 2023 22:03:48,216 DEBUG: Total peptides inserted: 7

22 Jun 2023 22:03:48,217 INFO : Inserting NFE2L2

22 Jun 2023 22:03:48,226 INFO : 11% Done

22 Jun 2023 22:03:48,479 INFO : 12% Done

22 Jun 2023 22:03:48,739 INFO : 13% Done

22 Jun 2023 22:03:48,865 DEBUG: Total peptides inserted: 5

22 Jun 2023 22:03:48,865 INFO : Inserting HMOX1

22 Jun 2023 22:03:49,004 INFO : 14% Done

22 Jun 2023 22:03:49,249 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:49,249 INFO : Inserting CDKN2A

22 Jun 2023 22:03:49,259 INFO : 15% Done

22 Jun 2023 22:03:49,495 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:03:49,495 INFO : Inserting ALDH3A1

22 Jun 2023 22:03:49,511 INFO : 16% Done

22 Jun 2023 22:03:49,739 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:49,739 INFO : Inserting CCND1

22 Jun 2023 22:03:49,748 INFO : 17% Done

22 Jun 2023 22:03:50,003 INFO : 18% Done

22 Jun 2023 22:03:50,120 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:50,120 INFO : Inserting DHFR

22 Jun 2023 22:03:50,218 INFO : 19% Done

22 Jun 2023 22:03:50,450 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:50,450 INFO : Inserting FOXP3

22 Jun 2023 22:03:50,545 INFO : 20% Done

22 Jun 2023 22:03:50,756 DEBUG: Total peptides inserted: 4

22 Jun 2023 22:03:50,756 INFO : Inserting MGST1

22 Jun 2023 22:03:50,764 INFO : 21% Done

22 Jun 2023 22:03:50,944 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:03:50,945 INFO : Inserting SQSTM1

22 Jun 2023 22:03:50,954 INFO : 22% Done

22 Jun 2023 22:03:51,196 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:03:51,196 INFO : Inserting BLVRB

22 Jun 2023 22:03:51,205 INFO : 23% Done

22 Jun 2023 22:03:51,448 INFO : 24% Done

22 Jun 2023 22:03:51,560 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:51,560 INFO : Inserting GPX4

22 Jun 2023 22:03:51,689 INFO : 25% Done

22 Jun 2023 22:03:51,923 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:51,923 INFO : Inserting MAFG

22 Jun 2023 22:03:52,174 INFO : 26% Done

22 Jun 2023 22:03:52,287 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:52,287 INFO : Inserting AKR1B10

22 Jun 2023 22:03:52,418 INFO : 27% Done

22 Jun 2023 22:03:52,652 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:52,652 INFO : Inserting CABYR

22 Jun 2023 22:03:52,661 INFO : 28% Done

22 Jun 2023 22:03:52,776 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:03:52,776 INFO : Inserting GSR

22 Jun 2023 22:03:52,909 INFO : 29% Done

22 Jun 2023 22:03:53,228 INFO : 30% Done

22 Jun 2023 22:03:53,476 DEBUG: Total peptides inserted: 4

22 Jun 2023 22:03:53,476 INFO : Inserting MYC

22 Jun 2023 22:03:53,617 INFO : 31% Done

22 Jun 2023 22:03:53,873 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:53,873 INFO : Inserting TP53

22 Jun 2023 22:03:53,883 INFO : 32% Done

22 Jun 2023 22:03:54,184 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:54,184 INFO : Inserting PIK3CA

22 Jun 2023 22:03:54,194 INFO : 33% Done

22 Jun 2023 22:03:54,452 INFO : 34% Done

22 Jun 2023 22:03:54,571 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:54,571 INFO : Inserting ME1

22 Jun 2023 22:03:54,703 INFO : 35% Done

22 Jun 2023 22:03:54,902 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:54,902 INFO : Inserting SOX2

22 Jun 2023 22:03:54,912 INFO : 36% Done

22 Jun 2023 22:03:55,154 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:03:55,154 INFO : Inserting GCLC

22 Jun 2023 22:03:55,164 INFO : 37% Done

22 Jun 2023 22:03:55,409 INFO : 38% Done

22 Jun 2023 22:03:55,525 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:55,525 INFO : Inserting GCLM

22 Jun 2023 22:03:55,660 INFO : 39% Done

22 Jun 2023 22:03:55,902 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:55,902 INFO : Inserting CUL3

22 Jun 2023 22:03:55,911 INFO : 40% Done

22 Jun 2023 22:03:56,182 INFO : 41% Done

22 Jun 2023 22:03:56,329 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:56,330 INFO : Inserting KEAP1

22 Jun 2023 22:03:56,463 INFO : 42% Done

22 Jun 2023 22:03:56,704 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:56,704 INFO : Inserting PTGR1

22 Jun 2023 22:03:56,714 INFO : 43% Done

22 Jun 2023 22:03:56,954 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:03:56,954 INFO : Inserting TXNRD1

22 Jun 2023 22:03:56,964 INFO : 44% Done

22 Jun 2023 22:03:57,202 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:03:57,202 INFO : Inserting ZNF746

22 Jun 2023 22:03:57,212 INFO : 45% Done

22 Jun 2023 22:03:57,450 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:03:57,450 INFO : Inserting ABHD4

22 Jun 2023 22:03:57,459 INFO : 46% Done

22 Jun 2023 22:03:57,574 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:03:57,574 INFO : Inserting SRXN1

22 Jun 2023 22:03:57,707 INFO : 47% Done

22 Jun 2023 22:03:57,933 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:57,933 INFO : Inserting ADD2

22 Jun 2023 22:03:57,942 INFO : 48% Done

22 Jun 2023 22:03:58,189 INFO : 49% Done

22 Jun 2023 22:03:58,267 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:58,267 INFO : Inserting AKR1B1

22 Jun 2023 22:03:58,399 INFO : 50% Done

22 Jun 2023 22:03:58,516 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:03:58,516 INFO : Inserting ALDH3A2

22 Jun 2023 22:03:58,650 INFO : 51% Done

22 Jun 2023 22:03:58,875 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:58,875 INFO : Inserting BACH1

22 Jun 2023 22:03:58,884 INFO : 52% Done

22 Jun 2023 22:03:59,132 INFO : 53% Done

22 Jun 2023 22:03:59,248 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:59,248 INFO : Inserting BAG2

22 Jun 2023 22:03:59,379 INFO : 54% Done

22 Jun 2023 22:03:59,642 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:59,642 INFO : Inserting CCL5

22 Jun 2023 22:03:59,649 INFO : 55% Done

22 Jun 2023 22:03:59,971 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:03:59,972 INFO : Inserting CD4

22 Jun 2023 22:03:59,981 INFO : 56% Done

22 Jun 2023 22:04:00,261 INFO : 57% Done

22 Jun 2023 22:04:00,350 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:00,350 INFO : Inserting CD8A

22 Jun 2023 22:04:00,501 INFO : 58% Done

22 Jun 2023 22:04:00,632 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:00,632 INFO : Inserting CTLA4

22 Jun 2023 22:04:00,778 INFO : 59% Done

22 Jun 2023 22:04:00,879 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:00,880 INFO : Inserting CYP4F11

22 Jun 2023 22:04:01,019 INFO : 60% Done

22 Jun 2023 22:04:01,144 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:01,144 INFO : Inserting DNAJB4

22 Jun 2023 22:04:01,277 INFO : 61% Done

22 Jun 2023 22:04:01,514 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:01,514 INFO : Inserting EGFR

22 Jun 2023 22:04:01,522 INFO : 62% Done

22 Jun 2023 22:04:01,735 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:01,735 INFO : Inserting EPHX1

22 Jun 2023 22:04:01,744 INFO : 63% Done

22 Jun 2023 22:04:01,969 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:01,969 INFO : Inserting FECH

22 Jun 2023 22:04:01,978 INFO : 64% Done

22 Jun 2023 22:04:02,160 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:02,160 INFO : Inserting GSTA4

22 Jun 2023 22:04:02,289 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:02,289 INFO : Inserting GSTM[124]

22 Jun 2023 22:04:02,297 INFO : 65% Done

22 Jun 2023 22:04:02,412 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:04:02,412 INFO : Inserting GSTM1

22 Jun 2023 22:04:02,452 INFO : 66% Done

22 Jun 2023 22:04:02,565 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:02,565 INFO : Inserting GSTM3

22 Jun 2023 22:04:02,760 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:02,760 INFO : Inserting GSTM4

22 Jun 2023 22:04:02,769 INFO : 67% Done

22 Jun 2023 22:04:02,895 INFO : 68% Done

22 Jun 2023 22:04:03,007 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:03,007 INFO : Inserting HTATIP2

22 Jun 2023 22:04:03,139 INFO : 69% Done

22 Jun 2023 22:04:03,252 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:03,252 INFO : Inserting IDH1

22 Jun 2023 22:04:03,468 INFO : 70% Done

22 Jun 2023 22:04:03,581 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:03,581 INFO : Inserting LDHA

22 Jun 2023 22:04:03,711 INFO : 71% Done

22 Jun 2023 22:04:03,825 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:03,825 INFO : Inserting MAP2

22 Jun 2023 22:04:04,013 INFO : 72% Done

22 Jun 2023 22:04:04,130 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:04,130 INFO : Inserting PGD

22 Jun 2023 22:04:04,267 INFO : 73% Done

22 Jun 2023 22:04:04,512 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:04,512 INFO : Inserting PIR

22 Jun 2023 22:04:04,522 INFO : 74% Done

22 Jun 2023 22:04:04,744 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:04,744 INFO : Inserting PRDX1

22 Jun 2023 22:04:04,999 INFO : 75% Done

22 Jun 2023 22:04:05,102 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:05,102 INFO : Inserting SLC7A11

22 Jun 2023 22:04:05,232 INFO : 76% Done

22 Jun 2023 22:04:05,395 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:05,395 INFO : Inserting TALDO1

22 Jun 2023 22:04:05,404 INFO : 77% Done

22 Jun 2023 22:04:05,655 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:05,655 INFO : Inserting TKT

22 Jun 2023 22:04:05,665 INFO : 78% Done

22 Jun 2023 22:04:05,921 INFO : 79% Done

22 Jun 2023 22:04:06,051 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:06,051 INFO : Inserting TP73

22 Jun 2023 22:04:06,199 INFO : 80% Done

22 Jun 2023 22:04:06,325 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:06,325 INFO : Inserting TXN

22 Jun 2023 22:04:06,452 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:04:06,452 INFO : Inserting UCHL1

22 Jun 2023 22:04:06,467 INFO : 81% Done

22 Jun 2023 22:04:06,689 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:06,689 INFO : Inserting CD274

22 Jun 2023 22:04:06,705 INFO : 82% Done

22 Jun 2023 22:04:06,958 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:06,958 INFO : Inserting SHMT2

22 Jun 2023 22:04:06,967 INFO : 83% Done

22 Jun 2023 22:04:07,207 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:07,207 INFO : Inserting PSAT1

22 Jun 2023 22:04:07,217 INFO : 84% Done

22 Jun 2023 22:04:07,463 INFO : 85% Done

22 Jun 2023 22:04:07,579 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:07,579 INFO : Inserting G6PD

22 Jun 2023 22:04:07,713 INFO : 86% Done

22 Jun 2023 22:04:07,911 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:07,911 INFO : Inserting AKR1C2

22 Jun 2023 22:04:08,035 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:04:08,036 INFO : Inserting ABCB6

22 Jun 2023 22:04:08,045 INFO : 87% Done

22 Jun 2023 22:04:08,235 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:08,235 INFO : Inserting AKR1C[134]

22 Jun 2023 22:04:08,245 INFO : 88% Done

22 Jun 2023 22:04:08,361 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:04:08,361 INFO : Inserting AKR1C3

22 Jun 2023 22:04:08,441 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:04:08,441 INFO : Inserting AKR1D1

22 Jun 2023 22:04:08,450 INFO : 89% Done

22 Jun 2023 22:04:08,735 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:08,735 INFO : Inserting CBR1

22 Jun 2023 22:04:08,743 INFO : 90% Done

22 Jun 2023 22:04:08,915 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:08,915 INFO : Inserting CBR3

22 Jun 2023 22:04:08,926 INFO : 91% Done

22 Jun 2023 22:04:09,262 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:09,262 INFO : Inserting NDUFAF3

22 Jun 2023 22:04:09,272 INFO : 92% Done

22 Jun 2023 22:04:09,482 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:09,482 INFO : Inserting NR2F6

22 Jun 2023 22:04:09,491 INFO : 93% Done

22 Jun 2023 22:04:09,726 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:09,726 INFO : Inserting TRIM16

22 Jun 2023 22:04:09,736 INFO : 94% Done

22 Jun 2023 22:04:09,971 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:09,971 INFO : Inserting UGDH

22 Jun 2023 22:04:09,980 INFO : 95% Done

22 Jun 2023 22:04:10,223 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:10,223 INFO : Inserting CD273

22 Jun 2023 22:04:10,233 INFO : 96% Done

22 Jun 2023 22:04:10,347 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:04:10,347 INFO : Inserting CD279

22 Jun 2023 22:04:10,478 INFO : 97% Done

22 Jun 2023 22:04:10,599 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:10,599 INFO : Inserting E6

22 Jun 2023 22:04:10,693 INFO : 98% Done

22 Jun 2023 22:04:10,893 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:10,895 INFO : Done parsing Skyline document.

22 Jun 2023 22:04:10,912 INFO : Creating and populating temp tables for Proportion values

22 Jun 2023 22:04:11,105 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

22 Jun 2023 22:04:11,776 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

22 Jun 2023 22:04:12,016 INFO : Cleaning up temp tables

22 Jun 2023 22:04:12,355 INFO : Completed import of Skyline document from CELL_LINES_2023-06-12_12-06-35.sky.zip

22 Jun 2023 22:04:12,357 INFO : 100% Done

22 Jun 2023 22:04:12,361 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161075/CELL_LINES_2023-06-12_12-06-35.sky.zip into the system

22 Jun 2023 22:04:12,362 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161076/FFPE_NRF2_MUT_WT_2023-06-12_12-29-17/FFPE_NRF2_MUT_WT.skyd into the system

22 Jun 2023 22:04:12,362 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161076/FFPE_NRF2_MUT_WT_2023-06-12_12-29-17/FFPE_NRF2_MUT_WT.skyd into the system

22 Jun 2023 22:04:12,362 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161076/FFPE_NRF2_MUT_WT_2023-06-12_12-29-17.sky.zip into the system

22 Jun 2023 22:04:12,363 INFO : Starting import from FFPE_NRF2_MUT_WT_2023-06-12_12-29-17.sky.zip

22 Jun 2023 22:04:12,365 INFO : Starting to import Skyline document from FFPE_NRF2_MUT_WT_2023-06-12_12-29-17.sky.zip

22 Jun 2023 22:04:12,790 INFO : Expanding FFPE_NRF2_MUT_WT.skyd

22 Jun 2023 22:04:36,985 INFO : Expanding FFPE_NRF2_MUT_WT.sky.view

22 Jun 2023 22:04:36,985 INFO : Expanding FFPE_NRF2_MUT_WT.sky

22 Jun 2023 22:04:37,036 INFO : Expanding FFPE_NRF2_MUT_WT.skyl

22 Jun 2023 22:04:37,037 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

22 Jun 2023 22:04:37,685 DEBUG: Starting to load chromatogram headers

22 Jun 2023 22:04:37,700 DEBUG: Done loading chromatogram headers

22 Jun 2023 22:04:37,919 INFO : Inserting TNFRSF4

22 Jun 2023 22:04:37,925 INFO : 1% Done

22 Jun 2023 22:04:38,083 INFO : 2% Done

22 Jun 2023 22:04:38,157 DEBUG: Total peptides inserted: 4

22 Jun 2023 22:04:38,157 INFO : Inserting NQO1

22 Jun 2023 22:04:38,243 INFO : 3% Done

22 Jun 2023 22:04:38,319 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:38,319 INFO : Inserting CES1

22 Jun 2023 22:04:38,379 INFO : 4% Done

22 Jun 2023 22:04:38,447 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:38,447 INFO : Inserting MAP1B

22 Jun 2023 22:04:38,538 INFO : 5% Done

22 Jun 2023 22:04:38,612 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:38,612 INFO : Inserting NAMPT

22 Jun 2023 22:04:38,703 INFO : 6% Done

22 Jun 2023 22:04:38,782 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:38,782 INFO : Inserting NDUFAF4

22 Jun 2023 22:04:38,875 INFO : 7% Done

22 Jun 2023 22:04:38,956 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:38,956 INFO : Inserting TP63

22 Jun 2023 22:04:39,073 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:39,073 INFO : Inserting E7

22 Jun 2023 22:04:39,080 INFO : 8% Done

22 Jun 2023 22:04:39,249 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:39,249 INFO : Inserting GAPDH

22 Jun 2023 22:04:39,293 INFO : 9% Done

22 Jun 2023 22:04:39,464 INFO : 10% Done

22 Jun 2023 22:04:39,615 DEBUG: Total peptides inserted: 7

22 Jun 2023 22:04:39,615 INFO : Inserting NFE2L2

22 Jun 2023 22:04:39,622 INFO : 11% Done

22 Jun 2023 22:04:39,780 INFO : 12% Done

22 Jun 2023 22:04:39,940 INFO : 13% Done

22 Jun 2023 22:04:40,013 DEBUG: Total peptides inserted: 5

22 Jun 2023 22:04:40,013 INFO : Inserting HMOX1

22 Jun 2023 22:04:40,102 INFO : 14% Done

22 Jun 2023 22:04:40,177 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:40,177 INFO : Inserting CDKN2A

22 Jun 2023 22:04:40,256 INFO : 15% Done

22 Jun 2023 22:04:40,329 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:40,329 INFO : Inserting ALDH3A1

22 Jun 2023 22:04:40,478 INFO : 16% Done

22 Jun 2023 22:04:40,542 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:40,542 INFO : Inserting CCND1

22 Jun 2023 22:04:40,626 INFO : 17% Done

22 Jun 2023 22:04:40,774 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:40,774 INFO : Inserting DHFR

22 Jun 2023 22:04:40,780 INFO : 18% Done

22 Jun 2023 22:04:40,931 INFO : 19% Done

22 Jun 2023 22:04:41,002 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:41,002 INFO : Inserting FOXP3

22 Jun 2023 22:04:41,078 INFO : 20% Done

22 Jun 2023 22:04:41,224 DEBUG: Total peptides inserted: 4

22 Jun 2023 22:04:41,224 INFO : Inserting MGST1

22 Jun 2023 22:04:41,231 INFO : 21% Done

22 Jun 2023 22:04:41,328 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:41,328 INFO : Inserting SQSTM1

22 Jun 2023 22:04:41,411 INFO : 22% Done

22 Jun 2023 22:04:41,483 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:41,483 INFO : Inserting BLVRB

22 Jun 2023 22:04:41,564 INFO : 23% Done

22 Jun 2023 22:04:41,709 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:41,709 INFO : Inserting GPX4

22 Jun 2023 22:04:41,715 INFO : 24% Done

22 Jun 2023 22:04:41,866 INFO : 25% Done

22 Jun 2023 22:04:41,937 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:41,937 INFO : Inserting MAFG

22 Jun 2023 22:04:42,163 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:42,163 INFO : Inserting AKR1B10

22 Jun 2023 22:04:42,169 INFO : 26% Done

22 Jun 2023 22:04:42,320 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:42,320 INFO : Inserting CABYR

22 Jun 2023 22:04:42,326 INFO : 27% Done

22 Jun 2023 22:04:42,400 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:04:42,400 INFO : Inserting GSR

22 Jun 2023 22:04:42,527 INFO : 28% Done

22 Jun 2023 22:04:42,677 DEBUG: Total peptides inserted: 4

22 Jun 2023 22:04:42,677 INFO : Inserting MYC

22 Jun 2023 22:04:42,684 INFO : 29% Done

22 Jun 2023 22:04:42,840 INFO : 30% Done

22 Jun 2023 22:04:42,915 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:42,915 INFO : Inserting TP53

22 Jun 2023 22:04:43,000 INFO : 31% Done

22 Jun 2023 22:04:43,152 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:43,153 INFO : Inserting PIK3CA

22 Jun 2023 22:04:43,159 INFO : 32% Done

22 Jun 2023 22:04:43,313 INFO : 33% Done

22 Jun 2023 22:04:43,385 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:43,386 INFO : Inserting ME1

22 Jun 2023 22:04:43,466 INFO : 34% Done

22 Jun 2023 22:04:43,617 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:43,617 INFO : Inserting SOX2

22 Jun 2023 22:04:43,700 INFO : 35% Done

22 Jun 2023 22:04:43,773 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:43,773 INFO : Inserting GCLC

22 Jun 2023 22:04:43,856 INFO : 36% Done

22 Jun 2023 22:04:44,006 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:44,006 INFO : Inserting GCLM

22 Jun 2023 22:04:44,012 INFO : 37% Done

22 Jun 2023 22:04:44,165 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:44,165 INFO : Inserting CUL3

22 Jun 2023 22:04:44,171 INFO : 38% Done

22 Jun 2023 22:04:44,320 INFO : 39% Done

22 Jun 2023 22:04:44,391 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:44,391 INFO : Inserting KEAP1

22 Jun 2023 22:04:44,475 INFO : 40% Done

22 Jun 2023 22:04:44,625 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:44,625 INFO : Inserting PTGR1

22 Jun 2023 22:04:44,631 INFO : 41% Done

22 Jun 2023 22:04:44,782 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:44,782 INFO : Inserting TXNRD1

22 Jun 2023 22:04:44,789 INFO : 42% Done

22 Jun 2023 22:04:44,941 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:44,941 INFO : Inserting ZNF746

22 Jun 2023 22:04:44,948 INFO : 43% Done

22 Jun 2023 22:04:45,098 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:45,098 INFO : Inserting ABHD4

22 Jun 2023 22:04:45,104 INFO : 44% Done

22 Jun 2023 22:04:45,177 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:04:45,177 INFO : Inserting SRXN1

22 Jun 2023 22:04:45,254 INFO : 45% Done

22 Jun 2023 22:04:45,397 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:45,397 INFO : Inserting ADD2

22 Jun 2023 22:04:45,404 INFO : 46% Done

22 Jun 2023 22:04:45,638 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:45,638 INFO : Inserting AKR1B1

22 Jun 2023 22:04:45,645 INFO : 47% Done

22 Jun 2023 22:04:45,800 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:45,800 INFO : Inserting ALDH3A2

22 Jun 2023 22:04:45,807 INFO : 48% Done

22 Jun 2023 22:04:45,960 INFO : 49% Done

22 Jun 2023 22:04:46,023 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:46,023 INFO : Inserting BACH1

22 Jun 2023 22:04:46,106 INFO : 50% Done

22 Jun 2023 22:04:46,183 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:46,183 INFO : Inserting BAG2

22 Jun 2023 22:04:46,264 INFO : 51% Done

22 Jun 2023 22:04:46,410 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:46,410 INFO : Inserting CCL5

22 Jun 2023 22:04:46,417 INFO : 52% Done

22 Jun 2023 22:04:46,571 INFO : 53% Done

22 Jun 2023 22:04:46,643 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:46,643 INFO : Inserting CD4

22 Jun 2023 22:04:46,725 INFO : 54% Done

22 Jun 2023 22:04:46,869 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:46,869 INFO : Inserting CD8A

22 Jun 2023 22:04:46,876 INFO : 55% Done

22 Jun 2023 22:04:47,025 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:47,025 INFO : Inserting CTLA4

22 Jun 2023 22:04:47,031 INFO : 56% Done

22 Jun 2023 22:04:47,180 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:47,180 INFO : Inserting CYP4F11

22 Jun 2023 22:04:47,262 INFO : 57% Done

22 Jun 2023 22:04:47,338 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:47,338 INFO : Inserting DNAJB4

22 Jun 2023 22:04:47,473 INFO : 58% Done

22 Jun 2023 22:04:47,721 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:47,721 INFO : Inserting EGFR

22 Jun 2023 22:04:47,727 INFO : 59% Done

22 Jun 2023 22:04:47,881 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:47,881 INFO : Inserting EPHX1

22 Jun 2023 22:04:47,888 INFO : 60% Done

22 Jun 2023 22:04:48,043 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:48,043 INFO : Inserting FECH

22 Jun 2023 22:04:48,050 INFO : 61% Done

22 Jun 2023 22:04:48,200 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:48,200 INFO : Inserting GSTA4

22 Jun 2023 22:04:48,206 INFO : 62% Done

22 Jun 2023 22:04:48,354 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:48,354 INFO : Inserting GSTM[124]

22 Jun 2023 22:04:48,361 INFO : 63% Done

22 Jun 2023 22:04:48,438 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:04:48,438 INFO : Inserting GSTM1

22 Jun 2023 22:04:48,520 INFO : 64% Done

22 Jun 2023 22:04:48,593 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:48,593 INFO : Inserting GSTM3

22 Jun 2023 22:04:48,680 INFO : 65% Done

22 Jun 2023 22:04:48,754 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:48,754 INFO : Inserting GSTM4

22 Jun 2023 22:04:48,839 INFO : 66% Done

22 Jun 2023 22:04:48,990 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:48,990 INFO : Inserting HTATIP2

22 Jun 2023 22:04:48,996 INFO : 67% Done

22 Jun 2023 22:04:49,229 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:49,229 INFO : Inserting IDH1

22 Jun 2023 22:04:49,236 INFO : 68% Done

22 Jun 2023 22:04:49,393 INFO : 69% Done

22 Jun 2023 22:04:49,466 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:49,466 INFO : Inserting LDHA

22 Jun 2023 22:04:49,552 INFO : 70% Done

22 Jun 2023 22:04:49,624 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:49,624 INFO : Inserting MAP2

22 Jun 2023 22:04:49,710 INFO : 71% Done

22 Jun 2023 22:04:49,784 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:49,784 INFO : Inserting PGD

22 Jun 2023 22:04:49,872 INFO : 72% Done

22 Jun 2023 22:04:50,034 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:50,035 INFO : Inserting PIR

22 Jun 2023 22:04:50,042 INFO : 73% Done

22 Jun 2023 22:04:50,190 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:50,190 INFO : Inserting PRDX1

22 Jun 2023 22:04:50,197 INFO : 74% Done

22 Jun 2023 22:04:50,429 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:50,429 INFO : Inserting SLC7A11

22 Jun 2023 22:04:50,518 INFO : 75% Done

22 Jun 2023 22:04:50,675 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:50,675 INFO : Inserting TALDO1

22 Jun 2023 22:04:50,683 INFO : 76% Done

22 Jun 2023 22:04:50,847 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:50,847 INFO : Inserting TKT

22 Jun 2023 22:04:50,944 INFO : 77% Done

22 Jun 2023 22:04:51,098 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:51,099 INFO : Inserting TP73

22 Jun 2023 22:04:51,105 INFO : 78% Done

22 Jun 2023 22:04:51,258 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:51,258 INFO : Inserting TXN

22 Jun 2023 22:04:51,264 INFO : 79% Done

22 Jun 2023 22:04:51,340 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:04:51,340 INFO : Inserting UCHL1

22 Jun 2023 22:04:51,430 INFO : 80% Done

22 Jun 2023 22:04:51,497 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:51,497 INFO : Inserting CD274

22 Jun 2023 22:04:51,594 INFO : 81% Done

22 Jun 2023 22:04:51,672 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:51,672 INFO : Inserting SHMT2

22 Jun 2023 22:04:51,763 INFO : 82% Done

22 Jun 2023 22:04:51,841 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:51,841 INFO : Inserting PSAT1

22 Jun 2023 22:04:51,928 INFO : 83% Done

22 Jun 2023 22:04:52,086 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:52,086 INFO : Inserting G6PD

22 Jun 2023 22:04:52,092 INFO : 84% Done

22 Jun 2023 22:04:52,254 INFO : 85% Done

22 Jun 2023 22:04:52,328 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:52,328 INFO : Inserting AKR1C2

22 Jun 2023 22:04:52,406 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:04:52,406 INFO : Inserting ABCB6

22 Jun 2023 22:04:52,413 INFO : 86% Done

22 Jun 2023 22:04:52,564 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:52,564 INFO : Inserting AKR1C[134]

22 Jun 2023 22:04:52,571 INFO : 87% Done

22 Jun 2023 22:04:52,643 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:04:52,643 INFO : Inserting AKR1C3

22 Jun 2023 22:04:52,719 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:04:52,719 INFO : Inserting AKR1D1

22 Jun 2023 22:04:52,731 INFO : 88% Done

22 Jun 2023 22:04:52,885 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:52,885 INFO : Inserting CBR1

22 Jun 2023 22:04:52,958 INFO : 89% Done

22 Jun 2023 22:04:53,032 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:53,032 INFO : Inserting CBR3

22 Jun 2023 22:04:53,116 INFO : 90% Done

22 Jun 2023 22:04:53,265 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:53,265 INFO : Inserting NDUFAF3

22 Jun 2023 22:04:53,271 INFO : 91% Done

22 Jun 2023 22:04:53,426 INFO : 92% Done

22 Jun 2023 22:04:53,499 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:53,499 INFO : Inserting NR2F6

22 Jun 2023 22:04:53,581 INFO : 93% Done

22 Jun 2023 22:04:53,649 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:53,649 INFO : Inserting TRIM16

22 Jun 2023 22:04:53,734 INFO : 94% Done

22 Jun 2023 22:04:53,802 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:53,802 INFO : Inserting UGDH

22 Jun 2023 22:04:53,886 INFO : 95% Done

22 Jun 2023 22:04:53,959 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:04:53,959 INFO : Inserting CD273

22 Jun 2023 22:04:54,035 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:04:54,035 INFO : Inserting CD279

22 Jun 2023 22:04:54,041 INFO : 96% Done

22 Jun 2023 22:04:54,199 INFO : 97% Done

22 Jun 2023 22:04:54,272 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:54,272 INFO : Inserting E6

22 Jun 2023 22:04:54,359 INFO : 98% Done

22 Jun 2023 22:04:54,514 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:04:54,516 INFO : Done parsing Skyline document.

22 Jun 2023 22:04:54,532 INFO : Creating and populating temp tables for Proportion values

22 Jun 2023 22:04:54,684 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

22 Jun 2023 22:04:55,108 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

22 Jun 2023 22:04:55,260 INFO : Cleaning up temp tables

22 Jun 2023 22:04:55,499 INFO : Completed import of Skyline document from FFPE_NRF2_MUT_WT_2023-06-12_12-29-17.sky.zip

22 Jun 2023 22:04:55,501 INFO : 100% Done

22 Jun 2023 22:04:55,505 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161076/FFPE_NRF2_MUT_WT_2023-06-12_12-29-17.sky.zip into the system

22 Jun 2023 22:04:55,505 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161078/SCC90_SCC152_SCC154_2023-06-12_13-00-29/SCC90_SCC152_SCC154.skyd into the system

22 Jun 2023 22:04:55,505 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161078/SCC90_SCC152_SCC154_2023-06-12_13-00-29/SCC90_SCC152_SCC154.skyd into the system

22 Jun 2023 22:04:55,505 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161078/SCC90_SCC152_SCC154_2023-06-12_13-00-29.sky.zip into the system

22 Jun 2023 22:04:55,506 INFO : Starting import from SCC90_SCC152_SCC154_2023-06-12_13-00-29.sky.zip

22 Jun 2023 22:04:55,508 INFO : Starting to import Skyline document from SCC90_SCC152_SCC154_2023-06-12_13-00-29.sky.zip

22 Jun 2023 22:04:55,823 INFO : Expanding SCC90_SCC152_SCC154.skyd

22 Jun 2023 22:05:09,365 INFO : Expanding SCC90_SCC152_SCC154.sky.view

22 Jun 2023 22:05:09,366 INFO : Expanding SCC90_SCC152_SCC154.sky

22 Jun 2023 22:05:09,396 INFO : Expanding SCC90_SCC152_SCC154.skyl

22 Jun 2023 22:05:09,398 WARN : The version of this Skyline document is 22.2. This is newer than the highest supported version 22.13

22 Jun 2023 22:05:09,793 DEBUG: Starting to load chromatogram headers

22 Jun 2023 22:05:09,802 DEBUG: Done loading chromatogram headers

22 Jun 2023 22:05:10,013 INFO : Inserting TNFRSF4

22 Jun 2023 22:05:10,017 INFO : 1% Done

22 Jun 2023 22:05:10,097 INFO : 2% Done

22 Jun 2023 22:05:10,143 DEBUG: Total peptides inserted: 4

22 Jun 2023 22:05:10,144 INFO : Inserting NQO1

22 Jun 2023 22:05:10,197 INFO : 3% Done

22 Jun 2023 22:05:10,245 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:10,245 INFO : Inserting CES1

22 Jun 2023 22:05:10,301 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:10,301 INFO : Inserting MAP1B

22 Jun 2023 22:05:10,311 INFO : 4% Done

22 Jun 2023 22:05:10,409 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:10,409 INFO : Inserting NAMPT

22 Jun 2023 22:05:10,414 INFO : 5% Done

22 Jun 2023 22:05:10,512 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:10,512 INFO : Inserting NDUFAF4

22 Jun 2023 22:05:10,518 INFO : 6% Done

22 Jun 2023 22:05:10,621 INFO : 7% Done

22 Jun 2023 22:05:10,670 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:10,670 INFO : Inserting TP63

22 Jun 2023 22:05:10,775 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:10,775 INFO : Inserting E7

22 Jun 2023 22:05:10,779 INFO : 8% Done

22 Jun 2023 22:05:10,869 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:10,869 INFO : Inserting GAPDH

22 Jun 2023 22:05:10,873 INFO : 9% Done

22 Jun 2023 22:05:10,972 INFO : 10% Done

22 Jun 2023 22:05:11,083 INFO : 11% Done

22 Jun 2023 22:05:11,184 DEBUG: Total peptides inserted: 7

22 Jun 2023 22:05:11,184 INFO : Inserting NFE2L2

22 Jun 2023 22:05:11,189 INFO : 12% Done

22 Jun 2023 22:05:11,295 INFO : 13% Done

22 Jun 2023 22:05:11,402 INFO : 14% Done

22 Jun 2023 22:05:11,450 DEBUG: Total peptides inserted: 5

22 Jun 2023 22:05:11,450 INFO : Inserting HMOX1

22 Jun 2023 22:05:11,559 INFO : 15% Done

22 Jun 2023 22:05:11,608 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:11,608 INFO : Inserting CDKN2A

22 Jun 2023 22:05:11,661 INFO : 16% Done

22 Jun 2023 22:05:11,708 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:11,708 INFO : Inserting ALDH3A1

22 Jun 2023 22:05:11,766 INFO : 17% Done

22 Jun 2023 22:05:11,808 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:11,809 INFO : Inserting CCND1

22 Jun 2023 22:05:11,866 INFO : 18% Done

22 Jun 2023 22:05:11,963 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:11,963 INFO : Inserting DHFR

22 Jun 2023 22:05:11,968 INFO : 19% Done

22 Jun 2023 22:05:12,071 INFO : 20% Done

22 Jun 2023 22:05:12,118 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:12,118 INFO : Inserting FOXP3

22 Jun 2023 22:05:12,175 INFO : 21% Done

22 Jun 2023 22:05:12,280 DEBUG: Total peptides inserted: 4

22 Jun 2023 22:05:12,281 INFO : Inserting MGST1

22 Jun 2023 22:05:12,286 INFO : 22% Done

22 Jun 2023 22:05:12,387 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:12,387 INFO : Inserting SQSTM1

22 Jun 2023 22:05:12,392 INFO : 23% Done

22 Jun 2023 22:05:12,494 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:12,494 INFO : Inserting BLVRB

22 Jun 2023 22:05:12,499 INFO : 24% Done

22 Jun 2023 22:05:12,653 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:12,653 INFO : Inserting GPX4

22 Jun 2023 22:05:12,658 INFO : 25% Done

22 Jun 2023 22:05:12,809 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:12,809 INFO : Inserting MAFG

22 Jun 2023 22:05:12,866 INFO : 26% Done

22 Jun 2023 22:05:12,966 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:12,966 INFO : Inserting AKR1B10

22 Jun 2023 22:05:12,972 INFO : 27% Done

22 Jun 2023 22:05:13,077 INFO : 28% Done

22 Jun 2023 22:05:13,126 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:13,126 INFO : Inserting CABYR

22 Jun 2023 22:05:13,179 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:05:13,179 INFO : Inserting GSR

22 Jun 2023 22:05:13,184 INFO : 29% Done

22 Jun 2023 22:05:13,287 INFO : 30% Done

22 Jun 2023 22:05:13,385 DEBUG: Total peptides inserted: 4

22 Jun 2023 22:05:13,385 INFO : Inserting MYC

22 Jun 2023 22:05:13,390 INFO : 31% Done

22 Jun 2023 22:05:13,491 INFO : 32% Done

22 Jun 2023 22:05:13,539 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:13,539 INFO : Inserting TP53

22 Jun 2023 22:05:13,593 INFO : 33% Done

22 Jun 2023 22:05:13,662 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:13,662 INFO : Inserting PIK3CA

22 Jun 2023 22:05:13,716 INFO : 34% Done

22 Jun 2023 22:05:13,811 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:13,811 INFO : Inserting ME1

22 Jun 2023 22:05:13,816 INFO : 35% Done

22 Jun 2023 22:05:13,916 INFO : 36% Done

22 Jun 2023 22:05:13,962 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:13,962 INFO : Inserting SOX2

22 Jun 2023 22:05:14,015 INFO : 37% Done

22 Jun 2023 22:05:14,062 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:14,062 INFO : Inserting GCLC

22 Jun 2023 22:05:14,117 INFO : 38% Done

22 Jun 2023 22:05:14,213 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:14,213 INFO : Inserting GCLM

22 Jun 2023 22:05:14,218 INFO : 39% Done

22 Jun 2023 22:05:14,318 INFO : 40% Done

22 Jun 2023 22:05:14,366 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:14,366 INFO : Inserting CUL3

22 Jun 2023 22:05:14,420 INFO : 41% Done

22 Jun 2023 22:05:14,516 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:14,516 INFO : Inserting KEAP1

22 Jun 2023 22:05:14,521 INFO : 42% Done

22 Jun 2023 22:05:14,667 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:14,667 INFO : Inserting PTGR1

22 Jun 2023 22:05:14,671 INFO : 43% Done

22 Jun 2023 22:05:14,768 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:14,768 INFO : Inserting TXNRD1

22 Jun 2023 22:05:14,773 INFO : 44% Done

22 Jun 2023 22:05:14,869 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:14,869 INFO : Inserting ZNF746

22 Jun 2023 22:05:14,874 INFO : 45% Done

22 Jun 2023 22:05:14,971 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:14,971 INFO : Inserting ABHD4

22 Jun 2023 22:05:14,975 INFO : 46% Done

22 Jun 2023 22:05:15,022 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:05:15,023 INFO : Inserting SRXN1

22 Jun 2023 22:05:15,077 INFO : 47% Done

22 Jun 2023 22:05:15,168 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:15,168 INFO : Inserting ADD2

22 Jun 2023 22:05:15,173 INFO : 48% Done

22 Jun 2023 22:05:15,276 INFO : 49% Done

22 Jun 2023 22:05:15,326 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:15,326 INFO : Inserting AKR1B1

22 Jun 2023 22:05:15,381 INFO : 50% Done

22 Jun 2023 22:05:15,427 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:15,428 INFO : Inserting ALDH3A2

22 Jun 2023 22:05:15,482 INFO : 51% Done

22 Jun 2023 22:05:15,572 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:15,572 INFO : Inserting BACH1

22 Jun 2023 22:05:15,577 INFO : 52% Done

22 Jun 2023 22:05:15,724 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:15,724 INFO : Inserting BAG2

22 Jun 2023 22:05:15,728 INFO : 53% Done

22 Jun 2023 22:05:15,829 INFO : 54% Done

22 Jun 2023 22:05:15,876 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:15,876 INFO : Inserting CCL5

22 Jun 2023 22:05:15,930 INFO : 55% Done

22 Jun 2023 22:05:16,030 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:16,030 INFO : Inserting CD4

22 Jun 2023 22:05:16,035 INFO : 56% Done

22 Jun 2023 22:05:16,137 INFO : 57% Done

22 Jun 2023 22:05:16,186 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:16,186 INFO : Inserting CD8A

22 Jun 2023 22:05:16,241 INFO : 58% Done

22 Jun 2023 22:05:16,288 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:16,288 INFO : Inserting CTLA4

22 Jun 2023 22:05:16,343 INFO : 59% Done

22 Jun 2023 22:05:16,393 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:16,393 INFO : Inserting CYP4F11

22 Jun 2023 22:05:16,448 INFO : 60% Done

22 Jun 2023 22:05:16,501 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:16,501 INFO : Inserting DNAJB4

22 Jun 2023 22:05:16,554 INFO : 61% Done

22 Jun 2023 22:05:16,651 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:16,651 INFO : Inserting EGFR

22 Jun 2023 22:05:16,655 INFO : 62% Done

22 Jun 2023 22:05:16,754 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:16,754 INFO : Inserting EPHX1

22 Jun 2023 22:05:16,759 INFO : 63% Done

22 Jun 2023 22:05:16,858 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:16,858 INFO : Inserting FECH

22 Jun 2023 22:05:16,863 INFO : 64% Done

22 Jun 2023 22:05:16,936 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:16,936 INFO : Inserting GSTA4

22 Jun 2023 22:05:16,993 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:16,993 INFO : Inserting GSTM[124]

22 Jun 2023 22:05:16,997 INFO : 65% Done

22 Jun 2023 22:05:17,044 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:05:17,044 INFO : Inserting GSTM1

22 Jun 2023 22:05:17,070 INFO : 66% Done

22 Jun 2023 22:05:17,117 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:17,117 INFO : Inserting GSTM3

22 Jun 2023 22:05:17,209 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:17,209 INFO : Inserting GSTM4

22 Jun 2023 22:05:17,214 INFO : 67% Done

22 Jun 2023 22:05:17,318 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:17,318 INFO : Inserting HTATIP2

22 Jun 2023 22:05:17,323 INFO : 68% Done

22 Jun 2023 22:05:17,426 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:17,426 INFO : Inserting IDH1

22 Jun 2023 22:05:17,431 INFO : 69% Done

22 Jun 2023 22:05:17,534 INFO : 70% Done

22 Jun 2023 22:05:17,581 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:17,581 INFO : Inserting LDHA

22 Jun 2023 22:05:17,634 INFO : 71% Done

22 Jun 2023 22:05:17,681 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:17,681 INFO : Inserting MAP2

22 Jun 2023 22:05:17,736 INFO : 72% Done

22 Jun 2023 22:05:17,783 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:17,783 INFO : Inserting PGD

22 Jun 2023 22:05:17,839 INFO : 73% Done

22 Jun 2023 22:05:17,939 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:17,939 INFO : Inserting PIR

22 Jun 2023 22:05:17,943 INFO : 74% Done

22 Jun 2023 22:05:18,035 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:18,035 INFO : Inserting PRDX1

22 Jun 2023 22:05:18,178 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:18,178 INFO : Inserting SLC7A11

22 Jun 2023 22:05:18,182 INFO : 75% Done

22 Jun 2023 22:05:18,282 INFO : 76% Done

22 Jun 2023 22:05:18,328 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:18,328 INFO : Inserting TALDO1

22 Jun 2023 22:05:18,382 INFO : 77% Done

22 Jun 2023 22:05:18,428 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:18,428 INFO : Inserting TKT

22 Jun 2023 22:05:18,482 INFO : 78% Done

22 Jun 2023 22:05:18,580 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:18,580 INFO : Inserting TP73

22 Jun 2023 22:05:18,585 INFO : 79% Done

22 Jun 2023 22:05:18,679 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:18,679 INFO : Inserting TXN

22 Jun 2023 22:05:18,683 INFO : 80% Done

22 Jun 2023 22:05:18,728 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:05:18,728 INFO : Inserting UCHL1

22 Jun 2023 22:05:18,786 INFO : 81% Done

22 Jun 2023 22:05:18,823 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:18,823 INFO : Inserting CD274

22 Jun 2023 22:05:18,882 INFO : 82% Done

22 Jun 2023 22:05:18,931 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:18,931 INFO : Inserting SHMT2

22 Jun 2023 22:05:18,986 INFO : 83% Done

22 Jun 2023 22:05:19,033 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:19,033 INFO : Inserting PSAT1

22 Jun 2023 22:05:19,087 INFO : 84% Done

22 Jun 2023 22:05:19,214 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:19,214 INFO : Inserting G6PD

22 Jun 2023 22:05:19,220 INFO : 85% Done

22 Jun 2023 22:05:19,422 INFO : 86% Done

22 Jun 2023 22:05:19,471 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:19,471 INFO : Inserting AKR1C2

22 Jun 2023 22:05:19,522 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:05:19,522 INFO : Inserting ABCB6

22 Jun 2023 22:05:19,577 INFO : 87% Done

22 Jun 2023 22:05:19,596 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:19,596 INFO : Inserting AKR1C[134]

22 Jun 2023 22:05:19,647 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:05:19,647 INFO : Inserting AKR1C3

22 Jun 2023 22:05:19,651 INFO : 88% Done

22 Jun 2023 22:05:19,698 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:05:19,698 INFO : Inserting AKR1D1

22 Jun 2023 22:05:19,753 INFO : 89% Done

22 Jun 2023 22:05:19,853 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:19,853 INFO : Inserting CBR1

22 Jun 2023 22:05:19,857 INFO : 90% Done

22 Jun 2023 22:05:19,934 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:19,934 INFO : Inserting CBR3

22 Jun 2023 22:05:19,990 INFO : 91% Done

22 Jun 2023 22:05:20,085 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:20,085 INFO : Inserting NDUFAF3

22 Jun 2023 22:05:20,089 INFO : 92% Done

22 Jun 2023 22:05:20,192 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:20,192 INFO : Inserting NR2F6

22 Jun 2023 22:05:20,196 INFO : 93% Done

22 Jun 2023 22:05:20,294 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:20,295 INFO : Inserting TRIM16

22 Jun 2023 22:05:20,299 INFO : 94% Done

22 Jun 2023 22:05:20,396 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:20,397 INFO : Inserting UGDH

22 Jun 2023 22:05:20,401 INFO : 95% Done

22 Jun 2023 22:05:20,499 DEBUG: Total peptides inserted: 2

22 Jun 2023 22:05:20,499 INFO : Inserting CD273

22 Jun 2023 22:05:20,503 INFO : 96% Done

22 Jun 2023 22:05:20,552 DEBUG: Total peptides inserted: 1

22 Jun 2023 22:05:20,552 INFO : Inserting CD279

22 Jun 2023 22:05:20,607 INFO : 97% Done

22 Jun 2023 22:05:20,658 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:20,658 INFO : Inserting E6

22 Jun 2023 22:05:20,713 INFO : 98% Done

22 Jun 2023 22:05:20,807 DEBUG: Total peptides inserted: 3

22 Jun 2023 22:05:20,809 INFO : Done parsing Skyline document.

22 Jun 2023 22:05:20,825 INFO : Creating and populating temp tables for Proportion values

22 Jun 2023 22:05:20,941 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

22 Jun 2023 22:05:21,207 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

22 Jun 2023 22:05:21,301 INFO : Cleaning up temp tables

22 Jun 2023 22:05:21,532 INFO : Completed import of Skyline document from SCC90_SCC152_SCC154_2023-06-12_13-00-29.sky.zip

22 Jun 2023 22:05:21,534 INFO : 100% Done

22 Jun 2023 22:05:21,538 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161078/SCC90_SCC152_SCC154_2023-06-12_13-00-29.sky.zip into the system

22 Jun 2023 22:05:21,552 INFO : Done importing xar

22 Jun 2023 22:05:21,554 INFO : Loading pages and webpart properties

22 Jun 2023 22:05:21,613 INFO : Done importing 3 page(s) with 5 webpart(s)

22 Jun 2023 22:05:21,613 INFO : Loading File Browser config

22 Jun 2023 22:05:21,613 INFO : Done importing File Browser config

22 Jun 2023 22:05:21,614 INFO : Starting Sample Status Data import

22 Jun 2023 22:05:21,614 INFO : No sample types XAR file to process.

22 Jun 2023 22:05:21,614 INFO : Finished importing Sample Status Data

22 Jun 2023 22:05:21,618 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType

22 Jun 2023 22:05:21,619 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping

22 Jun 2023 22:05:21,620 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping

22 Jun 2023 22:05:21,620 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping

22 Jun 2023 22:05:21,621 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping

22 Jun 2023 22:05:21,621 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType

22 Jun 2023 22:05:21,621 INFO : Importing files metadata.

22 Jun 2023 22:05:21,621 DEBUG: [/Panorama Public/2023/WUSTL Major Lab - NRF2_HNSCC]  Reading files metadata from /data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL Major Lab - NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export

22 Jun 2023 22:05:21,622 INFO : 

22 Jun 2023 22:05:21,622 INFO : Experiment import completed successfully.

22 Jun 2023 22:05:21,622 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

22 Jun 2023 22:06:10,989 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'

22 Jun 2023 22:06:10,989 INFO : 

22 Jun 2023 22:06:10,989 INFO : Checking for library folders.

22 Jun 2023 22:06:10,991 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'

22 Jun 2023 22:06:11,013 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

22 Jun 2023 22:06:11,013 INFO : 

22 Jun 2023 22:06:11,013 INFO : Finishing up experiment copy.

22 Jun 2023 22:06:11,015 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

22 Jun 2023 22:06:11,015 INFO : Setting version on new experiment to 1

22 Jun 2023 22:06:11,015 INFO : Assigning a DOI.

22 Jun 2023 22:06:12,589 INFO : Assigned DOI: 10.6069/hsr2-7b17

22 Jun 2023 22:06:12,593 INFO : Updating permanent link to point to the new copy of the data.

22 Jun 2023 22:06:12,599 INFO : Removing copy permissions given to Panorama Public

22 Jun 2023 22:06:12,610 INFO : Adding read permissions to all users that are folder admins in the source folder.

22 Jun 2023 22:06:12,611 INFO : Assigning PanoramaPublicSubmitterRole to emilyz@wustl.edu

22 Jun 2023 22:06:12,611 INFO : Assigning PanoramaPublicSubmitterRole to emilyz@wustl.edu

22 Jun 2023 22:06:12,613 INFO : Adding user emilyz@wustl.edu to group Panorama Public Submitters

22 Jun 2023 22:06:12,617 INFO : User emilyz@wustl.edu is already a member of group Panorama Public Submitters

22 Jun 2023 22:06:12,625 INFO : Updating the 'Raw Data' tab configuration

22 Jun 2023 22:06:12,628 INFO : Updating dataFileUrls for run FFPE_HPV_2023-06-12_11-58-29.sky.zip; targetedms run ID 164771

22 Jun 2023 22:06:12,629 INFO : Updating dataFileUrl...

22 Jun 2023 22:06:12,629 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161073/FFPE_HPV_2023-06-12_11-58-29/FFPE_HPV.skyd

22 Jun 2023 22:06:12,629 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC/@files/FFPE_HPV_2023-06-12_11-58-29/FFPE_HPV.skyd

22 Jun 2023 22:06:12,632 INFO : Updating dataFileUrl...

22 Jun 2023 22:06:12,632 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161073/FFPE_HPV_2023-06-12_11-58-29.sky.zip

22 Jun 2023 22:06:12,632 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC/@files/FFPE_HPV_2023-06-12_11-58-29.sky.zip

22 Jun 2023 22:06:12,634 INFO : Updating dataFileUrls for run CELL_LINES_2023-06-12_12-06-35.sky.zip; targetedms run ID 164772

22 Jun 2023 22:06:12,635 INFO : Updating dataFileUrl...

22 Jun 2023 22:06:12,635 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161075/CELL_LINES_2023-06-12_12-06-35.sky.zip

22 Jun 2023 22:06:12,635 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC/@files/CELL_LINES_2023-06-12_12-06-35.sky.zip

22 Jun 2023 22:06:12,638 INFO : Updating dataFileUrl...

22 Jun 2023 22:06:12,638 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161075/CELL_LINES_2023-06-12_12-06-35/CELL_LINES.skyd

22 Jun 2023 22:06:12,638 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC/@files/CELL_LINES_2023-06-12_12-06-35/CELL_LINES.skyd

22 Jun 2023 22:06:12,641 INFO : Updating dataFileUrls for run FFPE_NRF2_MUT_WT_2023-06-12_12-29-17.sky.zip; targetedms run ID 164773

22 Jun 2023 22:06:12,642 INFO : Updating dataFileUrl...

22 Jun 2023 22:06:12,642 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161076/FFPE_NRF2_MUT_WT_2023-06-12_12-29-17.sky.zip

22 Jun 2023 22:06:12,642 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC/@files/FFPE_NRF2_MUT_WT_2023-06-12_12-29-17.sky.zip

22 Jun 2023 22:06:12,644 INFO : Updating dataFileUrl...

22 Jun 2023 22:06:12,644 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161076/FFPE_NRF2_MUT_WT_2023-06-12_12-29-17/FFPE_NRF2_MUT_WT.skyd

22 Jun 2023 22:06:12,644 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC/@files/FFPE_NRF2_MUT_WT_2023-06-12_12-29-17/FFPE_NRF2_MUT_WT.skyd

22 Jun 2023 22:06:12,647 INFO : Updating dataFileUrls for run SCC90_SCC152_SCC154_2023-06-12_13-00-29.sky.zip; targetedms run ID 164774

22 Jun 2023 22:06:12,648 INFO : Updating dataFileUrl...

22 Jun 2023 22:06:12,648 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161078/SCC90_SCC152_SCC154_2023-06-12_13-00-29.sky.zip

22 Jun 2023 22:06:12,648 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC/@files/SCC90_SCC152_SCC154_2023-06-12_13-00-29.sky.zip

22 Jun 2023 22:06:12,650 INFO : Updating dataFileUrl...

22 Jun 2023 22:06:12,651 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC_af74eb43-f3aa-103b-afc6-fea6ddf51ba4/_temp__2023-06-22_21-22-51/export/xar/experiments_and_runs.xar.exploded/Run161078/SCC90_SCC152_SCC154_2023-06-12_13-00-29/SCC90_SCC152_SCC154.skyd

22 Jun 2023 22:06:12,651 INFO : to: file:///data/labkey/files/Panorama%20Public/2023/WUSTL%20Major%20Lab%20-%20NRF2_HNSCC/@files/SCC90_SCC152_SCC154_2023-06-12_13-00-29/SCC90_SCC152_SCC154.skyd

22 Jun 2023 22:06:12,657 INFO : Making folder public.

22 Jun 2023 22:06:12,666 INFO : Hiding the Data Pipeline tab.

22 Jun 2023 22:06:12,670 INFO : Updating Submission. Setting copiedExperimentId to 1639

22 Jun 2023 22:06:12,726 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'