Panorama Dashboard: /Panorama Public/2022/MacCoss - Human AD Clean Diagnosis DIA Data/Supplementary Data

Supplementary Data

Raw peptide quantities from all brain regions and batch density. The top panel of box plots shows the distribution of log2 peptide
abundances for each individual in each brain region. The bottom panel of density plots shows the distribution of log2 peptide
abundances by batch in each brain region.

Supplementary Figure 2

Peptide quantities and batch density following MD Normalization. The top panel of box plots shows the distribution of log2 peptide
abundances after MD normalization for each individual in each brain region. The bottom panel of density plots shows the distribution
of log2 peptide abundances after MD normalization by batch in each brain region.

Supplementary Figure 3

Plot of first two principal component scores of the SMTG data set after controlling for batch factor. The scores are colored by
biological replicate, donor age, experimental batch and condition group factors. Confidence ellipses are shown for cofactors of
interest.

Supplementary Figure 4

Principal variance component analysis (PVCA) of protein group abundance from the SMTG samples. Estimated contribution of
proportional variance by age, batch condition, and sex effects are shown. The confounding batch cofactor present in unadjusted
data set (A) is “regressed out” using a simple linear regression model (B) prior to hypothesis testing.

Supplementary Figure 5

Known Alzheimer’s disease proteins shown in a Kegg pathway. Proteins quantified in the SMTG experiments map to protein
groups highlighted in red on pathway hsa05010.

Supplementary Tables

Supplementary Table 1. Summary metadata table for the superior and middle temporal gyri (SMTG).

Batch	Sample Label	Condition	Age	Sex	Mutation Status	PMI (hrs)	*APOE* Alleles	Cognitive Status	Study Name	Braak Stage	CERAD Score
1	TZR01	Autosomal Dominant ADD	52	Female	PSEN1	NA	3_4	Dementia	UW ADRC	3	3
1	TZR02	Sporadic ADD	90	Female	NA	3.85	3_3	Dementia	ACT	3	3
1	TZR03	Sporadic ADD	61	Male	NA	3	4_4	Dementia	UW ADRC	3	3
1	TZR04	Sporadic ADD	63	Male	NA	3.33	3_3	Dementia	UW ADRC	3	3
1	TZR05	Sporadic ADD	77	Male	NA	5.92	3_3	Dementia	ACT	3	3
1	TZR06	HCF/High ADNC	93	Male	NA	6.83	3_3	No dementia	ACT	3	2
1	TZR07	Autosomal Dominant ADD	39	Female	PSEN1	25	NA	Dementia	DIAN	3	3
1	TZR08	HCF/High ADNC	89	Female	NA	2.5	3_4	No dementia	ACT	3	3
1	TZR09	Sporadic ADD	88	Male	NA	4.38	3_3	Dementia	UW ADRC	3	3
1	TZR10	Autosomal Dominant ADD	44	Female	PSEN1	17.5	3_3	Dementia	UW ADRC	3	3
1	TZR11	HCF/Low ADNC	91	Male	NA	5	3_3	No dementia	ACT	2	0
1	TZR12	Autosomal Dominant ADD	78	Female	PSEN2	7	2_3	Dementia	UW ADRC	3	3
1	TZR13	HCF/High ADNC	92	Male	NA	5.57	3_4	No dementia	ACT	3	3
1	TZR14	HCF/Low ADNC	88	Female	NA	3.5	3_3	No dementia	ACT	2	0
2	TZR15	Sporadic ADD	85	Female	NA	3.52	3_3	Dementia	UW ADRC	3	2
2	TZR16	Autosomal Dominant ADD	45	Female	PSEN1	6	3_3	Dementia	UW ADRC	3	3
2	TZR17	Sporadic ADD	62	Male	NA	3.92	3_4	Dementia	UW ADRC	3	3
2	TZR18	Autosomal Dominant ADD	40	Male	PSEN1	15	NA	Dementia	DIAN	3	3
2	TZR19	HCF/High ADNC	92	Female	NA	4.08	3_3	No dementia	ACT	2	3
2	TZR20	HCF/High ADNC	87	Male	NA	4.5	3_3	No dementia	ACT	3	3
2	TZR21	Sporadic ADD	86	Male	NA	2.67	3_4	Dementia	UW ADRC	3	3
2	TZR22	Sporadic ADD	91	Female	NA	5.75	3_4	Dementia	UW ADRC	3	3
2	TZR23	HCF/High ADNC	92	Female	NA	6	4_4	No dementia	ACT	2	2
2	TZR24	Autosomal Dominant ADD	60	Male	PSEN2	20.5	3_3	Dementia	UW ADRC	3	3
2	TZR25	HCF/Low ADNC	94	Female	NA	4.85	3_3	No dementia	ACT	2	0
2	TZR26	HCF/Low ADNC	89	Male	NA	5	2_3	No dementia	ACT	1	0
2	TZR27	Sporadic ADD	91	Male	NA	7	3_4	Dementia	ACT	3	2
2	TZR28	Autosomal Dominant ADD	55	Male	PSEN2	3.98	3_4	Dementia	UW ADRC	3	3
3	TZR29	HCF/High ADNC	86	Female	NA	6.5	3_4	No dementia	ACT	2	2
3	TZR30	Sporadic ADD	59	Male	NA	5.08	3_4	Dementia	UW ADRC	3	3
3	TZR31	Autosomal Dominant ADD	43	Male	PSEN1	20	NA	Dementia	DIAN	3	3
3	TZR32	Autosomal Dominant ADD	45	Male	PSEN1	3.6	3_3	Dementia	UW ADRC	3	3
3	TZR33	HCF/High ADNC	96	Female	NA	6.87	3_3	No dementia	ACT	2	3
3	TZR34	HCF/Low ADNC	84	Male	NA	4.5	3_4	No dementia	ACT	1	0
3	TZR35	Autosomal Dominant ADD	64	Male	PSEN2	19	3_3	Dementia	UW ADRC	3	2
3	TZR36	HCF/Low ADNC	95	Female	NA	3.08	3_4	No dementia	ACT	2	0
3	TZR37	Sporadic ADD	93	Female	NA	6.5	3_3	Dementia	ACT	3	3
3	TZR38	HCF/High ADNC	89	Female	NA	5.08	3_3	No dementia	ACT	3	3
3	TZR39	Autosomal Dominant ADD	54	Female	APP	6	4_4	Dementia	UW ADRC	3	3
3	TZR40	Autosomal Dominant ADD	37	Male	PSEN1	7	3_3	Dementia	UW ADRC	3	3
3	TZR41	Sporadic ADD	94	Male	NA	3.85	3_3	Dementia	ACT	3	3
3	TZR42	Sporadic ADD	85	Male	NA	3.25	3_3	Dementia	UW ADRC	3	3
4	TZR43	HCF/High ADNC	98	Male	NA	4	3_4	No dementia	ACT	3	2
4	TZR44	Sporadic ADD	87	Female	NA	5.27	3_3	Dementia	UW ADRC	3	3
4	TZR45	Autosomal Dominant ADD	39	Male	PSEN1	18	NA	Dementia	DIAN	3	3
4	TZR46	HCF/Low ADNC	79	Female	NA	2.5	3_3	No dementia	ACT	1	0
4	TZR47	Autosomal Dominant ADD	42	Male	PSEN1	24	3_3	Dementia	UW ADRC	3	3
4	TZR48	Sporadic ADD	89	Female	NA	5.23	3_3	Dementia	ACT	3	2
4	TZR49	Sporadic ADD	67	Female	NA	4.75	3_3	Dementia	UW ADRC	3	3
4	TZR50	Autosomal Dominant ADD	49	Female	PSEN1	6.5	NA	Dementia	DIAN	3	3
4	TZR51	Sporadic ADD	100	Male	NA	4.33	3_3	Dementia	ACT	3	3
4	TZR52	Autosomal Dominant ADD	58	Male	PSEN1	24	2_3	Dementia	UW ADRC	3	3
4	TZR53	HCF/Low ADNC	86	Male	NA	3.25	3_3	No dementia	ACT	2	0
4	TZR54	Autosomal Dominant ADD	51	Female	PSEN1	24	2_3	Dementia	UW ADRC	3	3
4	TZR55	Autosomal Dominant ADD	55	Male	PSEN2	24	3_4	Dementia	UW ADRC	3	3
4	TZR56	HCF/High ADNC	79	Male	NA	2.5	3_3	No dementia	ACT	2	2
5	TZR57	Autosomal Dominant ADD	72	Male	PSEN2	NA	3_4	Dementia	UW ADRC	3	3
5	TZR58	Autosomal Dominant ADD	63	Male	PSEN1	8	3_3	Dementia	UW ADRC	3	3
5	TZR59	Autosomal Dominant ADD	35	Female	PSEN1	41.8	NA	Dementia	DIAN	3	3
5	TZR60	Autosomal Dominant ADD	61	Male	PSEN1	16	3_3	Dementia	UW ADRC	3	3
5	TZR61	Autosomal Dominant ADD	51	Male	PSEN1	9	NA	Dementia	DIAN	3	3
5	TZR62	HCF/Low ADNC	88	Female	NA	3.18	2_3	No dementia	ACT	1	0

Supplementary Table 2. Summary metadata table for the hippocampus brain tissue.

Batch	Sample Label	Condition	Age	Sex	Mutation Status	PMI (hrs)	*APOE* Alleles	Cognitive Status	Study Name	Braak Stage	CERAD Score
1	HZR01	Sporadic ADD	77	Male	NA	5.92	3_3	Dementia	ACT	3	3
1	HZR02	Autosomal Dominant ADD	61	Male	PSEN1	16	3_3	Dementia	UW ADRC	3	3
1	HZR03	HCF/High ADNC	98	Male	NA	4	3_4	No dementia	ACT	3	2
1	HZR04	Autosomal Dominant ADD	45	Male	PSEN1	3.6	3_3	Dementia	UW ADRC	3	3
1	HZR05	HCF/Low ADNC	84	Male	NA	4.5	3_4	No dementia	ACT	1	0
1	HZR06	HCF/High ADNC	92	Male	NA	5.57	3_4	No dementia	ACT	3	3
1	HZR07	Sporadic ADD	100	Male	NA	4.33	3_3	Dementia	ACT	3	3
1	HZR08	HCF/Low ADNC	89	Male	NA	5	2_3	No dementia	ACT	1	0
1	HZR09	Sporadic ADD	62	Male	NA	3.92	3_4	Dementia	UW ADRC	3	3
1	HZR10	HCF/High ADNC	78	Male	NA	4	3_3	No dementia	ACT	2	2
1	HZR11	HCF/High ADNC	96	Female	NA	6.87	3_3	No dementia	ACT	2	3
1	HZR12	HCF/Low ADNC	88	Female	NA	3.18	2_3	No dementia	ACT	1	0
1	HZR13	HCF/Low ADNC	88	Female	NA	3.5	3_3	No dementia	ACT	2	0
1	HZR14	Sporadic ADD	89	Female	NA	5.23	3_3	Dementia	ACT	3	2
2	HZR15	Sporadic ADD	63	Male	NA	3.33	3_3	Dementia	UW ADRC	3	3
2	HZR16	HCF/High ADNC	89	Female	NA	2.5	3_4	No dementia	ACT	3	3
2	HZR17	HCF/Low ADNC	95	Female	NA	3.08	3_4	No dementia	ACT	2	0
2	HZR18	HCF/High ADNC	87	Male	NA	4.5	3_3	No dementia	ACT	3	3
2	HZR19	HCF/High ADNC	93	Male	NA	6.83	3_3	No dementia	ACT	3	2
2	HZR20	Sporadic ADD	59	Male	NA	5.08	3_4	Dementia	UW ADRC	3	3
2	HZR21	HCF/Low ADNC	91	Male	NA	5	3_3	No dementia	ACT	2	0
2	HZR22	Sporadic ADD	93	Female	NA	6.5	3_3	Dementia	ACT	3	3
2	HZR23	Sporadic ADD	87	Female	NA	5.27	3_3	Dementia	UW ADRC	3	3
2	HZR24	Sporadic ADD	76	Male	NA	3.92	3_4	Dementia	UW ADRC	3	3
2	HZR25	Sporadic ADD	88	Male	NA	4.38	3_3	Dementia	UW ADRC	3	3
2	HZR26	Sporadic ADD	85	Female	NA	3.52	3_3	Dementia	UW ADRC	3	2
2	HZR27	HCF/Low ADNC	79	Female	NA	2.5	3_3	No dementia	ACT	1	0
2	HZR28	HCF/High ADNC	86	Female	NA	6.5	3_4	No dementia	ACT	2	2
3	HZR29	Sporadic ADD	86	Male	NA	2.67	3_4	Dementia	UW ADRC	3	3
3	HZR30	Sporadic ADD	94	Male	NA	3.85	3_3	Dementia	ACT	3	3
3	HZR31	Sporadic ADD	91	Female	NA	5.75	3_4	Dementia	UW ADRC	3	3
3	HZR32	HCF/High ADNC	92	Female	NA	6	4_4	No dementia	ACT	2	2
3	HZR33	Sporadic ADD	78	Female	NA	2.35	4_4	Dementia	UW ADRC	3	2
3	HZR34	HCF/Low ADNC	73	Male	NA	4.5	3_3	No dementia	ACT	1	0
3	HZR35	Sporadic ADD	67	Female	NA	4.75	3_3	Dementia	UW ADRC	3	3
3	HZR36	Sporadic ADD	85	Male	NA	3.25	3_3	Dementia	UW ADRC	3	3
3	HZR37	Sporadic ADD	90	Female	NA	3.85	3_3	Dementia	ACT	3	3
3	HZR38	Autosomal Dominant ADD	54	Female	APP	6	4_4	Dementia	UW ADRC	3	3
3	HZR39	HCF/High ADNC	89	Female	NA	5.08	3_3	No dementia	ACT	3	3
3	HZR40	HCF/Low ADNC	94	Female	NA	4.85	3_3	No dementia	ACT	2	0
3	HZR41	Sporadic ADD	91	Male	NA	7	3_4	Dementia	ACT	3	2
3	HZR42	HCF/High ADNC	92	Female	NA	4.08	3_3	No dementia	ACT	2	3
3	HZR43	Sporadic ADD	61	Male	NA	3	4_4	Dementia	UW ADRC	3	3
3	HZR44	HCF/Low ADNC	86	Male	NA	3.25	3_3	No dementia	ACT	2	0

Supplementary Table 3. Summary metadata table for the inferior parietal lobe (IPL) brain tissue.

Batch	Sample Label	Condition	Age	Sex	Mutation Status	PMI (hrs)	*APOE* Alleles	Cognitive Status	Study Name	Braak Stage	CERAD Score
1	PZR01	HCF/High ADNC	98	Male	NA	4	3_4	No dementia	ACT	3	2
1	PZR02	Autosomal Dominant ADD	51	Female	PSEN1	24	2_3	Dementia	UW ADRC	3	3
1	PZR03	HCF/Low ADNC	95	Female	NA	3.08	3_4	No dementia	ACT	2	0
1	PZR04	Sporadic ADD	63	Male	NA	3.33	3_3	Dementia	UW ADRC	3	3
1	PZR05	Sporadic ADD	87	Female	NA	5.27	3_3	Dementia	UW ADRC	3	3
1	PZR06	Autosomal Dominant ADD	55	Male	PSEN2	3.98	3_4	Dementia	UW ADRC	3	3
1	PZR07	Sporadic ADD	77	Male	NA	5.92	3_3	Dementia	ACT	3	3
1	PZR08	Autosomal Dominant ADD	63	Male	PSEN1	8	3_3	Dementia	UW ADRC	3	3
1	PZR09	Sporadic ADD	62	Male	NA	3.92	3_4	Dementia	UW ADRC	3	3
1	PZR10	HCF/High ADNC	89	Female	NA	2.5	3_4	No dementia	ACT	3	3
1	PZR11	Autosomal Dominant ADD	43	Male	PSEN1	20	NA	Dementia	DIAN	3	3
1	PZR12	Sporadic ADD	61	Male	NA	3	4_4	Dementia	UW ADRC	3	3
1	PZR13	HCF/Low ADNC	89	Male	NA	5	2_3	No dementia	ACT	1	0
1	PZR14	HCF/High ADNC	92	Female	NA	4.08	3_3	No dementia	ACT	2	3
2	PZR15	Sporadic ADD	67	Female	NA	4.75	3_3	Dementia	UW ADRC	3	3
2	PZR16	HCF/High ADNC	89	Female	NA	5.08	3_3	No dementia	ACT	3	3
2	PZR17	HCF/High ADNC	93	Male	NA	6.83	3_3	No dementia	ACT	3	2
2	PZR18	Sporadic ADD	91	Female	NA	5.75	3_4	Dementia	UW ADRC	3	3
2	PZR19	Sporadic ADD	59	Male	NA	5.08	3_4	Dementia	UW ADRC	3	3
2	PZR20	HCF/Low ADNC	86	Male	NA	3.25	3_3	No dementia	ACT	2	0
2	PZR21	Autosomal Dominant ADD	44	Female	PSEN1	17.5	3_3	Dementia	UW ADRC	3	3
2	PZR22	HCF/High ADNC	92	Female	NA	6	4_4	No dementia	ACT	2	2
2	PZR23	Autosomal Dominant ADD	35	Female	PSEN1	41.8	NA	Dementia	DIAN	3	3
2	PZR24	Autosomal Dominant ADD	37	Male	PSEN1	7	3_3	Dementia	UW ADRC	3	3
2	PZR25	Sporadic ADD	93	Female	NA	6.5	3_3	Dementia	ACT	3	3
2	PZR26	HCF/Low ADNC	94	Female	NA	4.85	3_3	No dementia	ACT	2	0
2	PZR27	Autosomal Dominant ADD	54	Female	APP	6	4_4	Dementia	UW ADRC	3	3
2	PZR28	Autosomal Dominant ADD	45	Male	PSEN1	3.6	3_3	Dementia	UW ADRC	3	3
3	PZR29	Sporadic ADD	91	Male	NA	7	3_4	Dementia	ACT	3	2
3	PZR30	HCF/Low ADNC	88	Female	NA	3.18	2_3	No dementia	ACT	1	0
3	PZR31	Sporadic ADD	85	Male	NA	3.25	3_3	Dementia	UW ADRC	3	3
3	PZR32	Autosomal Dominant ADD	49	Female	PSEN1	6.5	NA	Dementia	DIAN	3	3
3	PZR33	Autosomal Dominant ADD	55	Male	PSEN2	24	3_4	Dementia	UW ADRC	3	3
3	PZR34	HCF/High ADNC	96	Female	NA	6.87	3_3	No dementia	ACT	2	3
3	PZR35	Sporadic ADD	100	Male	NA	4.33	3_3	Dementia	ACT	3	3
3	PZR36	HCF/Low ADNC	84	Male	NA	4.5	3_4	No dementia	ACT	1	0
3	PZR37	HCF/High ADNC	92	Male	NA	5.57	3_4	No dementia	ACT	3	3
3	PZR38	HCF/High ADNC	78	Male	NA	4	3_3	No dementia	ACT	2	2
3	PZR39	Sporadic ADD	76	Male	NA	3.92	3_4	Dementia	UW ADRC	3	3
3	PZR40	Autosomal Dominant ADD	45	Female	PSEN1	6	3_3	Dementia	UW ADRC	3	3
3	PZR41	Autosomal Dominant ADD	60	Male	PSEN2	20.5	3_3	Dementia	UW ADRC	3	3
3	PZR42	Sporadic ADD	78	Female	NA	2.35	4_4	Dementia	UW ADRC	3	2
4	PZR43	Sporadic ADD	86	Male	NA	2.67	3_4	Dementia	UW ADRC	3	3
4	PZR44	Sporadic ADD	94	Male	NA	3.85	3_3	Dementia	ACT	3	3
4	PZR45	Autosomal Dominant ADD	39	Male	PSEN1	18	NA	Dementia	DIAN	3	3
4	PZR46	HCF/Low ADNC	88	Female	NA	3.5	3_3	No dementia	ACT	2	0
4	PZR47	Sporadic ADD	85	Female	NA	3.52	3_3	Dementia	UW ADRC	3	2
4	PZR48	HCF/High ADNC	79	Male	NA	2.5	3_3	No dementia	ACT	2	2
4	PZR49	HCF/High ADNC	86	Female	NA	6.5	3_4	No dementia	ACT	2	2
4	PZR50	Autosomal Dominant ADD	51	Male	PSEN1	9	NA	Dementia	DIAN	3	3
4	PZR51	HCF/High ADNC	87	Male	NA	4.5	3_3	No dementia	ACT	3	3
4	PZR52	Autosomal Dominant ADD	52	Female	PSEN1	NA	3_4	Dementia	UW ADRC	3	3
4	PZR53	Autosomal Dominant ADD	72	Male	PSEN2	NA	3_4	Dementia	UW ADRC	3	3
4	PZR54	HCF/Low ADNC	91	Male	NA	5	3_3	No dementia	ACT	2	0
4	PZR55	Autosomal Dominant ADD	61	Male	PSEN1	16	3_3	Dementia	UW ADRC	3	3
4	PZR56	Sporadic ADD	89	Female	NA	5.23	3_3	Dementia	ACT	3	2
5	PZR57	Autosomal Dominant ADD	64	Male	PSEN2	19	3_3	Dementia	UW ADRC	3	2
5	PZR58	Autosomal Dominant ADD	39	Female	PSEN1	25	NA	Dementia	DIAN	3	3
5	PZR59	Autosomal Dominant ADD	58	Male	PSEN1	24	2_3	Dementia	UW ADRC	3	3
5	PZR60	Autosomal Dominant ADD	42	Male	PSEN1	24	3_3	Dementia	UW ADRC	3	3
5	PZR61	Autosomal Dominant ADD	40	Male	PSEN1	15	NA	Dementia	DIAN	3	3

Supplementary Table 4. Summary metadata table for the caudate nucleus.

Batch	Sample Label	Condition	Age	Sex	Mutation Status	PMI (hrs)	*APOE* Alleles	Cognitive Status	Study Name	Braak Stage	CERAD Score
1	CZR01	Sporadic ADD	94	Male	NA	3.85	3_3	Dementia	ACT	3	3
1	CZR02	HCF/High ADNC	92	Male	NA	5.57	3_4	No dementia	ACT	3	3
1	CZR03	HCF/High ADNC	87	Male	NA	4.5	3_3	No dementia	ACT	3	3
1	CZR04	Autosomal Dominant ADD	61	Male	PSEN1	16	3_3	Dementia	UW ADRC	3	3
1	CZR05	Autosomal Dominant ADD	39	Male	PSEN1	18	NA	Dementia	DIAN	3	3
1	CZR06	Sporadic ADD	59	Male	NA	5.08	3_4	Dementia	UW ADRC	3	3
1	CZR07	Autosomal Dominant ADD	54	Female	APP	6	4_4	Dementia	UW ADRC	3	3
1	CZR08	HCF/Low ADNC	88	Female	NA	3.5	3_3	No dementia	ACT	2	0
1	CZR09	Autosomal Dominant ADD	42	Male	PSEN1	24	3_3	Dementia	UW ADRC	3	3
1	CZR10	Autosomal Dominant ADD	63	Male	PSEN1	8	3_3	Dementia	UW ADRC	3	3
1	CZR11	Sporadic ADD	78	Female	NA	2.35	4_4	Dementia	UW ADRC	3	2
1	CZR12	HCF/High ADNC	92	Female	NA	4.08	3_3	No dementia	ACT	2	3
1	CZR13	Autosomal Dominant ADD	49	Female	PSEN1	6.5	NA	Dementia	DIAN	3	3
1	CZR14	HCF/Low ADNC	78	Male	NA	4	2_3	No dementia	ACT	0	0
2	CZR15	HCF/Low ADNC	88	Female	NA	3.18	2_3	No dementia	ACT	1	0
2	CZR16	HCF/High ADNC	92	Female	NA	6	4_4	No dementia	ACT	2	2
2	CZR17	Autosomal Dominant ADD	51	Male	PSEN1	9	NA	Dementia	DIAN	3	3
2	CZR18	HCF/Low ADNC	89	Male	NA	5	2_3	No dementia	ACT	1	0
2	CZR19	Sporadic ADD	91	Male	NA	7	3_4	Dementia	ACT	3	2
2	CZR20	Autosomal Dominant ADD	60	Male	PSEN2	20.5	3_3	Dementia	UW ADRC	3	3
2	CZR21	Sporadic ADD	91	Female	NA	5.75	3_4	Dementia	UW ADRC	3	3
2	CZR22	Sporadic ADD	87	Female	NA	5.27	3_3	Dementia	UW ADRC	3	3
2	CZR23	HCF/High ADNC	96	Female	NA	6.87	3_3	No dementia	ACT	2	3
2	CZR24	Autosomal Dominant ADD	52	Female	PSEN1	NA	3_4	Dementia	UW ADRC	3	3
2	CZR25	Sporadic ADD	85	Male	NA	3.25	3_3	Dementia	UW ADRC	3	3
2	CZR26	Autosomal Dominant ADD	45	Male	PSEN1	3.6	3_3	Dementia	UW ADRC	3	3
2	CZR27	Sporadic ADD	86	Male	NA	2.67	3_4	Dementia	UW ADRC	3	3
2	CZR28	HCF/High ADNC	93	Male	NA	6.83	3_3	No dementia	ACT	3	2
3	CZR29	Sporadic ADD	76	Male	NA	3.92	3_4	Dementia	UW ADRC	3	3
3	CZR30	HCF/Low ADNC	95	Female	NA	3.08	3_4	No dementia	ACT	2	0
3	CZR31	Sporadic ADD	67	Female	NA	4.75	3_3	Dementia	UW ADRC	3	3
3	CZR32	Autosomal Dominant ADD	78	Female	PSEN2	7	2_3	Dementia	UW ADRC	3	3
3	CZR33	Autosomal Dominant ADD	37	Male	PSEN1	7	3_3	Dementia	UW ADRC	3	3
3	CZR34	HCF/High ADNC	86	Female	NA	6.5	3_4	No dementia	ACT	2	2
3	CZR35	Sporadic ADD	77	Male	NA	5.92	3_3	Dementia	ACT	3	3
3	CZR36	HCF/High ADNC	98	Male	NA	4	3_4	No dementia	ACT	3	2
3	CZR37	Sporadic ADD	89	Female	NA	5.23	3_3	Dementia	ACT	3	2
3	CZR38	Sporadic ADD	90	Female	NA	3.85	3_3	Dementia	ACT	3	3
3	CZR39	HCF/Low ADNC	86	Male	NA	3.25	3_3	No dementia	ACT	2	0
3	CZR40	Autosomal Dominant ADD	58	Male	PSEN1	24	2_3	Dementia	UW ADRC	3	3
3	CZR41	HCF/High ADNC	89	Female	NA	5.08	3_3	No dementia	ACT	3	3
3	CZR42	Autosomal Dominant ADD	39	Female	PSEN1	25	NA	Dementia	DIAN	3	3
4	CZR43	Autosomal Dominant ADD	45	Female	PSEN1	6	3_3	Dementia	UW ADRC	3	3
4	CZR44	HCF/High ADNC	79	Male	NA	2.5	3_3	No dementia	ACT	2	2
4	CZR45	HCF/Low ADNC	79	Female	NA	2.5	3_3	No dementia	ACT	1	0
4	CZR46	Autosomal Dominant ADD	55	Male	PSEN2	3.98	3_4	Dementia	UW ADRC	3	3
4	CZR47	Sporadic ADD	63	Male	NA	3.33	3_3	Dementia	UW ADRC	3	3
4	CZR48	HCF/Low ADNC	73	Male	NA	4.5	3_3	No dementia	ACT	1	0
4	CZR49	Sporadic ADD	93	Female	NA	6.5	3_3	Dementia	ACT	3	3
4	CZR50	HCF/Low ADNC	91	Male	NA	5	3_3	No dementia	ACT	2	0
4	CZR51	Sporadic ADD	88	Male	NA	4.38	3_3	Dementia	UW ADRC	3	3
4	CZR52	Autosomal Dominant ADD	43	Male	PSEN1	20	NA	Dementia	DIAN	3	3
4	CZR53	Autosomal Dominant ADD	55	Male	PSEN2	24	3_4	Dementia	UW ADRC	3	3
4	CZR54	Sporadic ADD	85	Female	NA	3.52	3_3	Dementia	UW ADRC	3	2
4	CZR55	Autosomal Dominant ADD	64	Male	PSEN2	19	3_3	Dementia	UW ADRC	3	2
4	CZR56	Autosomal Dominant ADD	35	Female	PSEN1	41.8	NA	Dementia	DIAN	3	3
4	CZR57	Sporadic ADD	61	Male	NA	3	4_4	Dementia	UW ADRC	3	3
4	CZR58	HCF/Low ADNC	84	Male	NA	4.5	3_4	No dementia	ACT	1	0

Supplementary Table 5. Mass spectrometry run order table for superior and middle temporal gyri (SMTG).

Run Order	Sample Name	Sample type
1	QC01	System Suitability
2	QC02	System Suitability
3	QC03	System Suitability
4	QC04	System Suitability
5	Equil-01	Equilibration
6	Equil-02	Equilibration
7	Equil-03	Equilibration
8	Equil-04	Equilibration
9	Equil-05	Equilibration
10	Equil-06	Equilibration
11	Equil-07	Equilibration
12	Equil-08	Equilibration
13	Equil-09	Equilibration
14	TZR03	Batch1 Sample Quant
15	TZR08	Batch1 Sample Quant
16	TZR07	Batch1 Sample Quant
17	TZR04	Batch1 Sample Quant
18	TZR09	Batch1 Sample Quant
19	TZR10	Batch1 Sample Quant
20	TZR01	Batch1 Sample Quant
21	TZR12	Batch1 Sample Quant
22	QC06	System Suitability
23	Batch 1 Pool	B1 Chr library 400-500
24	Batch 1 Pool	B1 Chr library 500-600
25	Batch 1 Pool	B1 Chr library 600-700
26	Batch 1 Pool	B1 Chr library 700-800
27	Batch 1 Pool	B1 Chr library 800-900
28	Batch 1 Pool	B1 Chr library 900-1000
29	QC07	System Suitability
30	HADT01	Batch QC (Brain QC)
31	TZR13	Batch1 Sample Quant
32	TZR06	Batch1 Sample Quant
33	TZR11	Batch1 Sample Quant
34	TRPR01	Batch Reference (Batch1 pool)
35	TZR02	Batch1 Sample Quant
36	TZR05	Batch1 Sample Quant
37	TZR14	Batch1 Sample Quant
38	QC08	System Suitability
39	TZR26	Batch 2 Sample Quant
40	TZR21	Batch 2 Sample Quant
41	TZR20	Batch 2 Sample Quant
42	TZR27	Batch 2 Sample Quant
43	TZR24	Batch 2 Sample Quant
44	TZR16	Batch 2 Sample Quant
45	TZR22	Batch 2 Sample Quant
46	TZR17	Batch 2 Sample Quant
47	QC09	System Suitability
48	Batch 2 Pool	B2 Chr library 400-500
49	Batch 2 Pool	B2 Chr library 500-600
50	Batch 2 Pool	B2 Chr library 600-700
51	Batch 2 Pool	B2 Chr library 700-800
52	Batch 2 Pool	B2 Chr library 800-900
53	Batch 2 Pool	B2 Chr library 900-1000
54	QC10	System Suitability
55	TZR15	Batch 2 Sample Quant
56	TZR25	Batch 2 Sample Quant
57	TZR18	Batch 2 Sample Quant
58	HADT02	Batch QC (Brain QC)
59	TZR23	Batch 2 Sample Quant
60	TZR19	Batch 2 Sample Quant
61	TZR28	Batch 2 Sample Quant
62	TRPR02	Batch Reference (Batch1 pool)
63	QC11	System Suitability
64	TZR35	Batch 3 Sample Quant
65	TZR37	Batch 3 Sample Quant
66	TZR33	Batch 3 Sample Quant
67	TRPR03	Batch Reference (Batch1 pool)
68	TZR39	Batch 3 Sample Quant
69	TZR32	Batch 3 Sample Quant
70	TZR42	Batch 3 Sample Quant
71	HADT03	Batch QC (Brain QC)
72	QC12	System Suitability
73	Batch 3 Pool	B3 Chr library 400-500
74	Batch 3 Pool	B3 Chr library 500-600
75	Batch 3 Pool	B3 Chr library 600-700
76	Batch 3 Pool	B3 Chr library 700-800
77	Batch 3 Pool	B3 Chr library 800-900
78	Batch 3 Pool	B3 Chr library 900-1000
79	QC13	System Suitability
80	TZR30	Batch 3 Sample Quant
81	TZR29	Batch 3 Sample Quant
82	TZR38	Batch 3 Sample Quant
83	TZR40	Batch 3 Sample Quant
84	TZR41	Batch 3 Sample Quant
85	TZR34	Batch 3 Sample Quant
86	TZR36	Batch 3 Sample Quant
87	TZR31	Batch 3 Sample Quant
88	QC14	System Suitability
89	TRPR05	Batch Reference (Batch1 pool)
90	TZR48	Batch 4 and 5 Sample Quant
91	TZR57	Batch 4 and 5 Sample Quant
92	HADTP05	Batch QC (Brain QC)
93	TZR46	Batch 4 and 5 Sample Quant
94	TZR50	Batch 4 and 5 Sample Quant
95	TZR47	Batch 4 and 5 Sample Quant
96	TRPR04	Batch Reference (Batch1 pool)
97	QC15	System Suitability
98	HADT04	Batch QC (Brain QC)
99	TZR51	Batch 4 and 5 Sample Quant
100	TZR55	Batch 4 and 5 Sample Quant
101	TZR45	Batch 4 and 5 Sample Quant
102	TZR61	Batch 4 and 5 Sample Quant
103	TZR44	Batch 4 and 5 Sample Quant
104	TZR54	Batch 4 and 5 Sample Quant
105	TZR43	Batch 4 and 5 Sample Quant
106	QC16	System Suitability
107	Batch 4 and 5 Pool	B4-B5 Chr library 400-500
108	Batch 4 and 5 Pool	B4-B5 Chr library 500-600
109	Batch 4 and 5 Pool	B4-B5 Chr library 600-700
110	Batch 4 and 5 Pool	B4-B5 Chr library 700-800
111	Batch 4 and 5 Pool	B4-B5 Chr library 800-900
112	Batch 4 and 5 Pool	B4-B5 Chr library 900-1000
113	QC17	System Suitability
114	TZR49	Batch 4 and 5 Sample Quant
115	TZR58	Batch 4 and 5 Sample Quant
116	TZR59	Batch 4 and 5 Sample Quant
117	TZR53	Batch 4 and 5 Sample Quant
118	TZR60	Batch 4 and 5 Sample Quant
119	TZR56	Batch 4 and 5 Sample Quant
120	TZR52	Batch 4 and 5 Sample Quant
121	TZR62	Batch 4 and 5 Sample Quant
122	QC18	System Suitability

Supplementary Table 6. Mass spectrometry run order table for the hippocampus.

Run Order	Sample Name	Sample type
1	QC01	System Suitability
2	QC02	System Suitability
3	QC03	System Suitability
4	QC04	System Suitability
5	Equil-01	Equilibration
6	Equil-02	Equilibration
7	Equil-03	Equilibration
8	Equil-04	Equilibration
9	Equil-05	Equilibration
10	Equil-06	Equilibration
11	Equil-07	Equilibration
12	Equil-08	Equilibration
13	Equil-09	Equilibration
14	QC05	System Suitability
15	HZR11	Batch1 Sample Quant
16	HRPR01	Batch Reference (Batch1 pool)
17	HZR10	Batch1 Sample Quant
18	HZR07	Batch1 Sample Quant
19	HZR01	Batch1 Sample Quant
20	HAD01	Batch QC (Brain QC)
21	HZR02	Batch1 Sample Quant
22	HZR08	Batch1 Sample Quant
23	QC06	System Suitability
24	Batch 1 Pool	B1 Chr library 400-500
25	Batch 1 Pool	B1 Chr library 500-600
26	Batch 1 Pool	B1 Chr library 600-700
27	Batch 1 Pool	B1 Chr library 700-800
28	Batch 1 Pool	B1 Chr library 800-900
29	Batch 1 Pool	B1 Chr library 900-1000
30	QC07	System Suitability
31	HZR12	Batch1 Sample Quant
32	HZR13	Batch1 Sample Quant
33	HZR04	Batch1 Sample Quant
34	HZR06	Batch1 Sample Quant
35	HZR09	Batch1 Sample Quant
36	HZR05	Batch1 Sample Quant
37	HZR14	Batch1 Sample Quant
38	HZR03	Batch1 Sample Quant
39	QC08	System Suitability
40	HZR15	Batch 2 Sample Quant
41	HZR20	Batch 2 Sample Quant
42	HZR24	Batch 2 Sample Quant
43	HZR16	Batch 2 Sample Quant
44	HZR22	Batch 2 Sample Quant
45	HZR28	Batch 2 Sample Quant
46	HZR25	Batch 2 Sample Quant
47	HZR18	Batch 2 Sample Quant
48	QC09	System Suitability
49	Batch 2 Pool	B2 Chr library 400-500
50	Batch 2 Pool	B2 Chr library 500-600
51	Batch 2 Pool	B2 Chr library 600-700
52	Batch 2 Pool	B2 Chr library 700-800
53	Batch 2 Pool	B2 Chr library 800-900
54	Batch 2 Pool	B2 Chr library 900-1000
55	QC10	System Suitability
56	HRPR02	Batch Reference (Batch1 pool)
57	HZR17	Batch 2 Sample Quant
58	HZR23	Batch 2 Sample Quant
59	HAD02	Batch QC (Brain QC)
60	HZR26	Batch 2 Sample Quant
61	HZR21	Batch 2 Sample Quant
62	HZR19	Batch 2 Sample Quant
63	HZR27	Batch 2 Sample Quant
64	QC11	System Suitability
65	HZR34	Batch 3 Sample Quant
66	HZR40	Batch 3 Sample Quant
67	HZR44	Batch 3 Sample Quant
68	HZR31	Batch 3 Sample Quant
69	HZR32	Batch 3 Sample Quant
70	HZR35	Batch 3 Sample Quant
71	HZR41	Batch 3 Sample Quant
72	QC12	System Suitability
73	Batch 3 Pool	B3 Chr library 400-500
74	Batch 3 Pool	B3 Chr library 500-600
75	Batch 3 Pool	B3 Chr library 600-700
76	Batch 3 Pool	B3 Chr library 700-800
77	Batch 3 Pool	B3 Chr library 800-900
78	Batch 3 Pool	B3 Chr library 900-1000
79	QC13	System Suitability
80	HZR29	Batch 3 Sample Quant
81	HRPR03b	Batch Reference (Batch1 pool)
82	HZR37	Batch 3 Sample Quant
83	HAD03a	Batch QC (Brain QC)
84	HZR38	Batch 3 Sample Quant
85	HZR43	Batch 3 Sample Quant
86	HZR42	Batch 3 Sample Quant
87	QC14	System Suitability
88	HZR30	Batch 3 Sample Quant
89	HAD03b	Batch QC (Brain QC)
90	HZR36	Batch 3 Sample Quant
91	HRPR03a	Batch Reference (Batch1 pool)
92	HZR39	Batch 3 Sample Quant
93	HZR33	Batch 3 Sample Quant
94	QC15	System Suitability

Supplementary Table 7. Mass spectrometry run order table for the inferior parietal lobule (IPL).

Run Order	Sample Name	Sample type
1	QC01	System Suitability
2	QC02	System Suitability
3	QC03	System Suitability
4	QC04	System Suitability
5	Equil-01	Equilibration
6	Equil-02	Equilibration
7	Equil-03	Equilibration
8	Equil-04	Equilibration
9	Equil-05	Equilibration
10	Equil-06	Equilibration
11	Equil-07	Equilibration
12	Equil-08	Equilibration
13	QC05	System Suitability
14	PZR05	Batch1 Sample Quant
15	PZR10	Batch1 Sample Quant
16	PZR01	Batch1 Sample Quant
17	PZR14	Batch1 Sample Quant
18	PZR09	Batch1 Sample Quant
19	PZR13	Batch1 Sample Quant
20	PZR04	Batch1 Sample Quant
21	PZR12	Batch1 Sample Quant
22	QC06	System Suitability
23	Batch 1 Pool	B1 Chr library 400-500
24	Batch 1 Pool	B1 Chr library 500-600
25	Batch 1 Pool	B1 Chr library 600-700
26	Batch 1 Pool	B1 Chr library 700-800
27	Batch 1 Pool	B1 Chr library 800-900
28	Batch 1 Pool	B1 Chr library 900-1000
29	QC07	System Suitability
30	PZR11	Batch1 Sample Quant
31	PZR03	Batch1 Sample Quant
32	PZR06	Batch1 Sample Quant
33	PZR08	Batch1 Sample Quant
34	HADP01	Batch QC (Brain QC)
35	PZR02	Batch1 Sample Quant
36	PRPR01	Batch Reference (Batch1 pool)
37	PZR07	Batch1 Sample Quant
38	QC08	System Suitability
39	PZR17	Batch 2 Sample Quant
40	PZR21	Batch 2 Sample Quant
41	PZR23	Batch 2 Sample Quant
42	PZR27	Batch 2 Sample Quant
43	PZR22	Batch 2 Sample Quant
44	PZR26	Batch 2 Sample Quant
45	PZR20	Batch 2 Sample Quant
46	PZR19	Batch 2 Sample Quant
47	QC09	System Suitability
48	Batch 2 Pool	B2 Chr library 400-500
49	Batch 2 Pool	B2 Chr library 500-600
50	Batch 2 Pool	B2 Chr library 600-700
51	Batch 2 Pool	B2 Chr library 700-800
52	Batch 2 Pool	B2 Chr library 800-900
53	Batch 2 Pool	B2 Chr library 900-1000
54	QC10	System Suitability
55	PZR25	Batch 2 Sample Quant
56	PZR28	Batch 2 Sample Quant
57	PZR16	Batch 2 Sample Quant
58	PZR24	Batch 2 Sample Quant
59	PZR18	Batch 2 Sample Quant
60	PRPR02	Batch Reference (Batch1 pool)
61	HADP02	Batch QC (Brain QC)
62	PZR15	Batch 2 Sample Quant
63	QC11	System Suitability
64	PZR39	Batch 3 Sample Quant
65	PZR34	Batch 3 Sample Quant
66	PZR31	Batch 3 Sample Quant
67	PZR42	Batch 3 Sample Quant
68	PZR33	Batch 3 Sample Quant
69	PRPR03	Batch Reference (Batch1 pool)
70	PZR30	Batch 3 Sample Quant
71	PZR35	Batch 3 Sample Quant
72	QC12	System Suitability
73	Batch 3 Pool	B3 Chr library 400-500
74	Batch 3 Pool	B3 Chr library 500-600
75	Batch 3 Pool	B3 Chr library 600-700
76	Batch 3 Pool	B3 Chr library 700-800
77	Batch 3 Pool	B3 Chr library 800-900
78	Batch 3 Pool	B3 Chr library 900-1000
79	QC13	System Suitability
80	HADP03	Batch QC (Brain QC)
81	PZR41	Batch 3 Sample Quant
82	PZR32	Batch 3 Sample Quant
83	PZR40	Batch 3 Sample Quant
84	PZR29	Batch 3 Sample Quant
85	PZR36	Batch 3 Sample Quant
86	PZR37	Batch 3 Sample Quant
87	PZR38	Batch 3 Sample Quant
88	QC14	System Suitability
89	PZR57	Batch 4 and 5 Sample Quant
90	PZR48	Batch 4 and 5 Sample Quant
91	PRPR04	Batch Reference (Batch1 pool)
92	PRPR05	Batch Reference (Batch1 pool)
93	PZR49	Batch 4 and 5 Sample Quant
94	PZR58	Batch 4 and 5 Sample Quant
95	PZR43	Batch 4 and 5 Sample Quant
96	PZR45	Batch 4 and 5 Sample Quant
97	QC15	System Suitability
98	Batch 4 and 5 Pool	B4-B5 Chr library 400-500
99	Batch 4 and 5 Pool	B4-B5 Chr library 500-600
100	Batch 4 and 5 Pool	B4-B5 Chr library 600-700
101	Batch 4 and 5 Pool	B4-B5 Chr library 700-800
102	Batch 4 and 5 Pool	B4-B5 Chr library 800-900
103	Batch 4 and 5 Pool	B4-B5 Chr library 900-1000
104	QC16	System Suitability
105	PZR55	Batch 4 and 5 Sample Quant
106	PZR51	Batch 4 and 5 Sample Quant
107	PZR61	Batch 4 and 5 Sample Quant
108	HADP05	Batch QC (Brain QC)
109	PZR60	Batch 4 and 5 Sample Quant
110	PZR50	Batch 4 and 5 Sample Quant
111	PZR52	Batch 4 and 5 Sample Quant
112	PZR47	Batch 4 and 5 Sample Quant
113	QC17	System Suitability
114	PZR44	Batch 4 and 5 Sample Quant
115	PZR59	Batch 4 and 5 Sample Quant
116	HADP04	Batch QC (Brain QC)
117	PZR54	Batch 4 and 5 Sample Quant
118	PZR53	Batch 4 and 5 Sample Quant
119	PZR46	Batch 4 and 5 Sample Quant
120	PZR56	Batch 4 and 5 Sample Quant
121	QC18	System Suitability

Supplementary Table 8. Mass spectrometry run order table for the caudate nucleus.

Run Order	Sample Name	Sample type
1	QC01	System Suitability
2	QC02	System Suitability
3	QC03	System Suitability
4	QC04	System Suitability
5	QC05	System Suitability
6	QC06	System Suitability
7	QC07	System Suitability
8	QC08	System Suitability
9	QC09	System Suitability
10	QC10	System Suitability
12	QC11	System Suitability - new vial
13	QC12	System Suitability
14	Equil-01	Equilibration
15	Equil-02	Equilibration
16	Equil-03	Equilibration
17	Equil-04	Equilibration
18	Equil-05	Equilibration
19	Equil-06	Equilibration
20	Equil-07	Equilibration
21	Equil-08	Equilibration
22	QC13	System Suitability
23	CZR07	Batch1 Sample Quant
24	CZR08	Batch1 Sample Quant
25	CZR10	Batch1 Sample Quant
26	CZR13	Batch1 Sample Quant
27	CRPR01	Batch Reference (Batch1 pool)
28	CZR05	Batch1 Sample Quant
29	CZR03	Batch1 Sample Quant
30	CZR09	Batch1 Sample Quant
31	QC14	System Suitability
32	Batch 1 Pool	B1 Chr library 400-500
33	Batch 1 Pool	B1 Chr library 500-600
34	Batch 1 Pool	B1 Chr library 600-700
35	Batch 1 Pool	B1 Chr library 700-800
36	Batch 1 Pool	B1 Chr library 800-900
37	Batch 1 Pool	B1 Chr library 900-1000
38	QC15	System Suitability
39	CZR01	Batch1 Sample Quant
40	CZR12	Batch1 Sample Quant
41	CZR06	Batch1 Sample Quant
42	CZR14	Batch1 Sample Quant
43	CZR02	Batch1 Sample Quant
44	HADC01	Batch QC (Brain QC)
45	CZR11	Batch1 Sample Quant
46	CZR04	Batch1 Sample Quant
47	QC16	System Suitability
48	CZR19	Batch 2 Sample Quant
49	CZR24	Batch 2 Sample Quant
50	CZR28	Batch 2 Sample Quant
51	CZR21	Batch 2 Sample Quant
52	CZR23	Batch 2 Sample Quant
53	CZR27	Batch 2 Sample Quant
54	CZR16	Batch 2 Sample Quant
55	CZR25	Batch 2 Sample Quant
56	QC17	System Suitability
57	Batch 2 Pool	B2 Chr library 400-500
58	Batch 2 Pool	B2 Chr library 500-600
59	Batch 2 Pool	B2 Chr library 600-700
60	Batch 2 Pool	B2 Chr library 700-800
61	Batch 2 Pool	B2 Chr library 800-900
62	Batch 2 Pool	B2 Chr library 900-1000
63	QC18	System Suitability
64	CZR20	Batch 2 Sample Quant
65	HADC02	Batch QC (Brain QC)
66	CZR15	Batch 2 Sample Quant
67	CZR22	Batch 2 Sample Quant
68	CZR17	Batch 2 Sample Quant
69	CZR18	Batch 2 Sample Quant
70	CZR26	Batch 2 Sample Quant
71	CRPR02	Batch Reference (Batch1 pool)
72	QC19	System Suitability
73	CZR31	Batch 3 Sample Quant
74	CZR33	Batch 3 Sample Quant
75	CZR37	Batch 3 Sample Quant
76	CZR36	Batch 3 Sample Quant
77	CZR42	Batch 3 Sample Quant
78	CZR41	Batch 3 Sample Quant
79	CZR38	Batch 3 Sample Quant
80	CZR40	Batch 3 Sample Quant
81	QC20	System Suitability
82	Batch 3 Pool	B3 Chr library 400-500
83	Batch 3 Pool	B3 Chr library 500-600
84	Batch 3 Pool	B3 Chr library 600-700
85	Batch 3 Pool	B3 Chr library 700-800
86	Batch 3 Pool	B3 Chr library 800-900
87	Batch 3 Pool	B3 Chr library 900-1000
88	QC21	System Suitability
89	CZR32	Batch 3 Sample Quant
90	CZR30	Batch 3 Sample Quant
91	CZR35	Batch 3 Sample Quant
92	CZR34	Batch 3 Sample Quant
93	CZR29	Batch 3 Sample Quant
94	HADC03	Batch QC (Brain QC)
95	CRPR03	Batch Reference (Batch1 pool)
96	CZR39	Batch 3 Sample Quant
97	QC22	System Suitability
98	CZR55	Batch 4 Sample Quant
99	CRPR04a	Batch 4 Sample Quant
100	CRPR04b	Batch Reference (Batch1 pool)
101	CZR49	Batch Reference (Batch1 pool)
102	CZR51	Batch 4 Sample Quant
103	HADC04a	Batch QC (Brain QC)
104	CZR46	Batch 4 Sample Quant
105	QC23	System Suitability
106	Batch 4 Pool	B4 Chr library 400-500
107	Batch 4 Pool	B4 Chr library 500-600
108	Batch 4 Pool	B4 Chr library 600-700
109	Batch 4 Pool	B4 Chr library 700-800
110	Batch 4 Pool	B4 Chr library 800-900
111	Batch 4 Pool	B4 Chr library 900-1000
112	QC24	System Suitability
113	CZR57	Batch 4 Sample Quant
114	CZR47	Batch 4 Sample Quant
115	CZR53	Batch 4 Sample Quant
116	CZR48	Batch 4 Sample Quant
117	CZR44	Batch 4 Sample Quant
118	CZR43	Batch 4 Sample Quant
119	HADC04b	Batch QC (Brain QC)
120	QC25	System Suitability
121	CZR56	Batch 4 Sample Quant
122	CZR45	Batch 4 Sample Quant
123	CZR58	Batch 4 Sample Quant
124	CZR54	Batch 4 Sample Quant
125	CZR50	Batch 4 Sample Quant
126	CZR52	Batch 4 Sample Quant
127	QC26	System Suitability

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