21 Jun 2021 19:56:05,730 INFO : Copying experiment "Targeted validation of significantly altered semen proteins in COVID-19 patients" from folder /IIT Bombay - Proteomics/COVID-19_Semen_Proteomics_Host to /Panorama Public/2021/IIT Bombay Proteomics - COVID-19_Semen_Proteomics_Host

21 Jun 2021 19:56:05,730 INFO : =======================================

21 Jun 2021 19:56:13,083 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'

21 Jun 2021 19:56:13,083 INFO : 

21 Jun 2021 19:56:13,083 INFO : Exporting experiment.

21 Jun 2021 19:56:37,721 INFO : 

21 Jun 2021 19:56:37,721 INFO : Experiment export completed successfully.

21 Jun 2021 19:56:37,721 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'

21 Jun 2021 19:56:37,757 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'

21 Jun 2021 19:56:37,757 INFO : 

21 Jun 2021 19:56:37,757 INFO : Importing experiment.

21 Jun 2021 19:56:37,762 INFO : Loading folder properties (folder type, settings and active modules)

21 Jun 2021 19:56:37,855 INFO : Done importing folder properties (folder type, settings and active modules)

21 Jun 2021 19:56:37,859 INFO : Loading etl definitions

21 Jun 2021 19:56:37,861 INFO : Loading wikis

21 Jun 2021 19:56:37,862 INFO : 0 wikis imported

21 Jun 2021 19:56:37,862 INFO : Done importing wikis

21 Jun 2021 19:56:37,862 INFO : Starting to copy files

21 Jun 2021 19:56:48,703 INFO : Copied 46 files

21 Jun 2021 19:56:48,703 INFO : Ensuring exp.data rows exist for imported files

21 Jun 2021 19:56:49,322 INFO : Starting Sample Type and Data Class import

21 Jun 2021 19:56:49,322 INFO : No types XAR file to process.

21 Jun 2021 19:56:49,322 INFO : Finished importing Sample Types and Data Classes

21 Jun 2021 19:56:49,324 INFO : Loading xar

21 Jun 2021 19:56:51,145 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8744:TargetedMS.ImportSkyZip'

21 Jun 2021 19:56:51,147 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8744:TargetedMS.ImportSkyZip.Core'

21 Jun 2021 19:56:51,149 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-8744:TargetedMS.ImportSkyZip.Output'

21 Jun 2021 19:56:51,149 DEBUG: Protocol import complete

21 Jun 2021 19:56:51,150 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-8744:Targeted+validation+of+significantly+altered+semen+proteins+in+COVID-19+patients'

21 Jun 2021 19:56:51,150 DEBUG: Experiment/Run group import complete

21 Jun 2021 19:56:51,159 DEBUG: Protocol action set import complete

21 Jun 2021 19:56:51,177 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8744:TargetedMS.ImportSkyZip'

21 Jun 2021 19:56:51,184 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8744:bf562e32-b261-1039-be5b-fea6ddf5138a'

21 Jun 2021 19:56:51,188 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8744:bf561f9e-b261-1039-be5b-fea6ddf5138a'

21 Jun 2021 19:56:51,188 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8744:TargetedMS.ImportSkyZip.Core'

21 Jun 2021 19:56:51,193 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8744:TargetedMS.ImportSkyZip.Output'

21 Jun 2021 19:56:51,194 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8744:bf562e8f-b261-1039-be5b-fea6ddf5138a'

21 Jun 2021 19:56:51,206 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8744:TargetedMS.ImportSkyZip'

21 Jun 2021 19:56:51,211 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-8744:bf5633bf-b261-1039-be5b-fea6ddf5138a'

21 Jun 2021 19:56:51,215 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-8744:bf56338e-b261-1039-be5b-fea6ddf5138a'

21 Jun 2021 19:56:51,215 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8744:TargetedMS.ImportSkyZip.Core'

21 Jun 2021 19:56:51,217 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-8744:TargetedMS.ImportSkyZip.Output'

21 Jun 2021 19:56:51,217 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-8744:bf56346e-b261-1039-be5b-fea6ddf5138a'

21 Jun 2021 19:56:51,218 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20COVID-19_Semen_Proteomics_Host_8950b8a5-b532-1039-be5b-fea6ddf5138a/_temp__2021-06-21_19-56-04/export/xar/experiments_and_runs.xar.exploded/Run111755/Semen_Host_DR_MRM_pool_2021-06-18_18-24-19/Semen_Host_DR_MRM_pool.skyd into the system

21 Jun 2021 19:56:51,219 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20COVID-19_Semen_Proteomics_Host_8950b8a5-b532-1039-be5b-fea6ddf5138a/_temp__2021-06-21_19-56-04/export/xar/experiments_and_runs.xar.exploded/Run111755/Semen_Host_DR_MRM_pool_2021-06-18_18-24-19/Semen_Host_DR_MRM_pool.skyd into the system

21 Jun 2021 19:56:51,219 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20COVID-19_Semen_Proteomics_Host_8950b8a5-b532-1039-be5b-fea6ddf5138a/_temp__2021-06-21_19-56-04/export/xar/experiments_and_runs.xar.exploded/Run111755/Semen_Host_DR_MRM_pool_2021-06-18_18-24-19.sky.zip into the system

21 Jun 2021 19:56:51,221 INFO : Starting import from Semen_Host_DR_MRM_pool_2021-06-18_18-24-19.sky.zip

21 Jun 2021 19:56:51,225 INFO : Starting to import Skyline document from Semen_Host_DR_MRM_pool_2021-06-18_18-24-19.sky.zip

21 Jun 2021 19:56:51,226 INFO : Expanding Human_Cov_5_semen.protdb

21 Jun 2021 19:56:53,347 INFO : Expanding Semen_Host_DR_MRM_pool.skyd

21 Jun 2021 19:56:53,352 INFO : Expanding Semen_Host_DR_MRM_pool.sky.view

21 Jun 2021 19:56:53,353 INFO : Expanding Semen_Host_DR_MRM_pool.sky

21 Jun 2021 19:56:53,358 INFO : Expanding Semen_Host_DR_MRM_pool.skyl

21 Jun 2021 19:56:53,364 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.2

21 Jun 2021 19:56:53,370 INFO : 1% Done

21 Jun 2021 19:56:53,381 DEBUG: Starting to load chromatogram headers

21 Jun 2021 19:56:53,381 DEBUG: Done loading chromatogram headers

21 Jun 2021 19:56:53,401 INFO : Inserting sp|P04279|SEMG1_HUMAN

21 Jun 2021 19:56:53,407 INFO : 2% Done

21 Jun 2021 19:56:53,428 INFO : 5% Done

21 Jun 2021 19:56:53,443 INFO : 6% Done

21 Jun 2021 19:56:53,455 INFO : 7% Done

21 Jun 2021 19:56:53,468 INFO : 9% Done

21 Jun 2021 19:56:53,483 INFO : 12% Done

21 Jun 2021 19:56:53,504 INFO : 13% Done

21 Jun 2021 19:56:53,514 INFO : 15% Done

21 Jun 2021 19:56:53,529 INFO : 17% Done

21 Jun 2021 19:56:53,545 INFO : 18% Done

21 Jun 2021 19:56:53,556 INFO : 20% Done

21 Jun 2021 19:56:53,571 INFO : 22% Done

21 Jun 2021 19:56:53,582 INFO : 23% Done

21 Jun 2021 19:56:53,595 INFO : 25% Done

21 Jun 2021 19:56:53,604 DEBUG: Total peptides inserted: 14

21 Jun 2021 19:56:53,608 INFO : Inserting sp|Q9BS86|ZPBP1_HUMAN

21 Jun 2021 19:56:53,611 INFO : 26% Done

21 Jun 2021 19:56:53,622 INFO : 27% Done

21 Jun 2021 19:56:53,634 INFO : 29% Done

21 Jun 2021 19:56:53,645 INFO : 30% Done

21 Jun 2021 19:56:53,657 INFO : 31% Done

21 Jun 2021 19:56:53,667 INFO : 33% Done

21 Jun 2021 19:56:53,676 DEBUG: Total peptides inserted: 6

21 Jun 2021 19:56:53,686 INFO : Inserting sp|Q5BJF6|ODFP2_HUMAN

21 Jun 2021 19:56:53,689 INFO : 34% Done

21 Jun 2021 19:56:53,699 INFO : 36% Done

21 Jun 2021 19:56:53,712 INFO : 37% Done

21 Jun 2021 19:56:53,724 INFO : 38% Done

21 Jun 2021 19:56:53,732 INFO : 39% Done

21 Jun 2021 19:56:53,745 INFO : 41% Done

21 Jun 2021 19:56:53,755 INFO : 42% Done

21 Jun 2021 19:56:53,766 INFO : 43% Done

21 Jun 2021 19:56:53,777 INFO : 45% Done

21 Jun 2021 19:56:53,786 DEBUG: Total peptides inserted: 9

21 Jun 2021 19:56:53,790 INFO : Inserting sp|O43505|B4GA1_HUMAN

21 Jun 2021 19:56:53,794 INFO : 46% Done

21 Jun 2021 19:56:53,801 DEBUG: Total peptides inserted: 1

21 Jun 2021 19:56:53,805 INFO : Inserting sp|P13987|CD59_HUMAN

21 Jun 2021 19:56:53,809 INFO : 48% Done

21 Jun 2021 19:56:53,823 INFO : 49% Done

21 Jun 2021 19:56:53,832 INFO : 50% Done

21 Jun 2021 19:56:53,845 INFO : 52% Done

21 Jun 2021 19:56:53,856 DEBUG: Total peptides inserted: 4

21 Jun 2021 19:56:53,860 INFO : Inserting sp|O14786|NRP1_HUMAN

21 Jun 2021 19:56:53,863 INFO : 54% Done

21 Jun 2021 19:56:53,877 INFO : 57% Done

21 Jun 2021 19:56:53,895 INFO : 58% Done

21 Jun 2021 19:56:53,907 INFO : 59% Done

21 Jun 2021 19:56:53,915 INFO : 60% Done

21 Jun 2021 19:56:53,922 DEBUG: Total peptides inserted: 5

21 Jun 2021 19:56:53,927 INFO : Inserting sp|Q6UW49|SPESP_HUMAN

21 Jun 2021 19:56:53,930 INFO : 62% Done

21 Jun 2021 19:56:53,949 INFO : 64% Done

21 Jun 2021 19:56:53,961 INFO : 66% Done

21 Jun 2021 19:56:53,976 DEBUG: Total peptides inserted: 5

21 Jun 2021 19:56:53,979 INFO : Inserting sp|P07602|SAP_HUMAN

21 Jun 2021 19:56:53,982 INFO : 67% Done

21 Jun 2021 19:56:53,992 INFO : 69% Done

21 Jun 2021 19:56:54,001 INFO : 70% Done

21 Jun 2021 19:56:54,011 INFO : 71% Done

21 Jun 2021 19:56:54,020 INFO : 73% Done

21 Jun 2021 19:56:54,035 INFO : 74% Done

21 Jun 2021 19:56:54,045 INFO : 75% Done

21 Jun 2021 19:56:54,056 INFO : 77% Done

21 Jun 2021 19:56:54,064 INFO : 78% Done

21 Jun 2021 19:56:54,071 DEBUG: Total peptides inserted: 9

21 Jun 2021 19:56:54,071 INFO : Inserting peptides1

21 Jun 2021 19:56:54,074 INFO : 80% Done

21 Jun 2021 19:56:54,088 DEBUG: Total peptides inserted: 1

21 Jun 2021 19:56:54,089 INFO : Done parsing Skyline document.

21 Jun 2021 19:56:54,090 INFO : Calculating fold changes

21 Jun 2021 19:56:54,090 DEBUG: Calculating fold change for group comparison  CoV19-R vs Control, 1 of 1

21 Jun 2021 19:56:54,545 INFO : 98% Done

21 Jun 2021 19:56:54,545 INFO : Done calculating fold changes.

21 Jun 2021 19:56:56,748 INFO : Creating and populating temp tables for Proportion values

21 Jun 2021 19:56:56,760 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

21 Jun 2021 19:56:56,771 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

21 Jun 2021 19:56:56,780 INFO : Cleaning up temp tables

21 Jun 2021 19:56:57,067 INFO : Completed import of Skyline document from Semen_Host_DR_MRM_pool_2021-06-18_18-24-19.sky.zip

21 Jun 2021 19:56:57,070 INFO : 100% Done

21 Jun 2021 19:56:57,074 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20COVID-19_Semen_Proteomics_Host_8950b8a5-b532-1039-be5b-fea6ddf5138a/_temp__2021-06-21_19-56-04/export/xar/experiments_and_runs.xar.exploded/Run111755/Semen_Host_DR_MRM_pool_2021-06-18_18-24-19.sky.zip into the system

21 Jun 2021 19:56:57,075 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20COVID-19_Semen_Proteomics_Host_8950b8a5-b532-1039-be5b-fea6ddf5138a/_temp__2021-06-21_19-56-04/export/xar/experiments_and_runs.xar.exploded/Run111756/Semen_Host_DR_MRM_individual_samples_2021-06-18_18-31-08/Semen_Host_DR_MRM_individual_samples.skyd into the system

21 Jun 2021 19:56:57,075 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20COVID-19_Semen_Proteomics_Host_8950b8a5-b532-1039-be5b-fea6ddf5138a/_temp__2021-06-21_19-56-04/export/xar/experiments_and_runs.xar.exploded/Run111756/Semen_Host_DR_MRM_individual_samples_2021-06-18_18-31-08/Semen_Host_DR_MRM_individual_samples.skyd into the system

21 Jun 2021 19:56:57,075 DEBUG: Trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20COVID-19_Semen_Proteomics_Host_8950b8a5-b532-1039-be5b-fea6ddf5138a/_temp__2021-06-21_19-56-04/export/xar/experiments_and_runs.xar.exploded/Run111756/Semen_Host_DR_MRM_individual_samples_2021-06-18_18-31-08.sky.zip into the system

21 Jun 2021 19:56:57,077 INFO : Starting import from Semen_Host_DR_MRM_individual_samples_2021-06-18_18-31-08.sky.zip

21 Jun 2021 19:56:57,079 INFO : Starting to import Skyline document from Semen_Host_DR_MRM_individual_samples_2021-06-18_18-31-08.sky.zip

21 Jun 2021 19:56:57,081 INFO : Expanding Human_Cov_5_semen.protdb

21 Jun 2021 19:56:59,106 INFO : Expanding Semen_Host_DR_MRM_individual_samples.skyd

21 Jun 2021 19:56:59,137 INFO : Expanding Semen_Host_DR_MRM_individual_samples.sky.view

21 Jun 2021 19:56:59,138 INFO : Expanding Semen_Host_DR_MRM_individual_samples.sky

21 Jun 2021 19:56:59,150 INFO : Expanding Semen_Host_DR_MRM_individual_samples.skyl

21 Jun 2021 19:56:59,155 WARN : The version of this Skyline document is 21.1. This is newer than the highest supported version 20.2

21 Jun 2021 19:56:59,160 INFO : 1% Done

21 Jun 2021 19:56:59,231 DEBUG: Starting to load chromatogram headers

21 Jun 2021 19:56:59,233 DEBUG: Done loading chromatogram headers

21 Jun 2021 19:56:59,285 INFO : Inserting sp|P04279|SEMG1_HUMAN

21 Jun 2021 19:56:59,294 INFO : 2% Done

21 Jun 2021 19:56:59,341 INFO : 4% Done

21 Jun 2021 19:56:59,389 INFO : 6% Done

21 Jun 2021 19:56:59,427 INFO : 7% Done

21 Jun 2021 19:56:59,467 INFO : 8% Done

21 Jun 2021 19:56:59,514 INFO : 12% Done

21 Jun 2021 19:56:59,591 INFO : 13% Done

21 Jun 2021 19:56:59,624 INFO : 14% Done

21 Jun 2021 19:56:59,674 INFO : 17% Done

21 Jun 2021 19:56:59,722 INFO : 18% Done

21 Jun 2021 19:56:59,760 INFO : 20% Done

21 Jun 2021 19:56:59,815 INFO : 22% Done

21 Jun 2021 19:56:59,852 INFO : 23% Done

21 Jun 2021 19:56:59,898 INFO : 25% Done

21 Jun 2021 19:56:59,932 DEBUG: Total peptides inserted: 14

21 Jun 2021 19:56:59,936 INFO : Inserting sp|Q9BS86|ZPBP1_HUMAN

21 Jun 2021 19:56:59,941 INFO : 26% Done

21 Jun 2021 19:56:59,990 INFO : 27% Done

21 Jun 2021 19:57:00,053 INFO : 28% Done

21 Jun 2021 19:57:00,113 INFO : 30% Done

21 Jun 2021 19:57:00,184 INFO : 31% Done

21 Jun 2021 19:57:00,236 INFO : 33% Done

21 Jun 2021 19:57:00,277 DEBUG: Total peptides inserted: 6

21 Jun 2021 19:57:00,281 INFO : Inserting sp|Q5BJF6|ODFP2_HUMAN

21 Jun 2021 19:57:00,289 INFO : 34% Done

21 Jun 2021 19:57:00,351 INFO : 35% Done

21 Jun 2021 19:57:00,407 INFO : 37% Done

21 Jun 2021 19:57:00,460 INFO : 38% Done

21 Jun 2021 19:57:00,517 INFO : 39% Done

21 Jun 2021 19:57:00,568 INFO : 40% Done

21 Jun 2021 19:57:00,616 INFO : 42% Done

21 Jun 2021 19:57:00,691 INFO : 43% Done

21 Jun 2021 19:57:00,744 INFO : 45% Done

21 Jun 2021 19:57:00,798 DEBUG: Total peptides inserted: 9

21 Jun 2021 19:57:00,803 INFO : Inserting sp|O43505|B4GA1_HUMAN

21 Jun 2021 19:57:00,811 INFO : 46% Done

21 Jun 2021 19:57:00,844 DEBUG: Total peptides inserted: 1

21 Jun 2021 19:57:00,853 INFO : Inserting sp|P13987|CD59_HUMAN

21 Jun 2021 19:57:00,864 INFO : 48% Done

21 Jun 2021 19:57:00,921 INFO : 49% Done

21 Jun 2021 19:57:00,959 INFO : 50% Done

21 Jun 2021 19:57:01,027 INFO : 52% Done

21 Jun 2021 19:57:01,076 DEBUG: Total peptides inserted: 4

21 Jun 2021 19:57:01,080 INFO : Inserting sp|O14786|NRP1_HUMAN

21 Jun 2021 19:57:01,092 INFO : 54% Done

21 Jun 2021 19:57:01,162 INFO : 56% Done

21 Jun 2021 19:57:01,258 INFO : 58% Done

21 Jun 2021 19:57:01,338 INFO : 59% Done

21 Jun 2021 19:57:01,404 INFO : 60% Done

21 Jun 2021 19:57:01,443 DEBUG: Total peptides inserted: 5

21 Jun 2021 19:57:01,447 INFO : Inserting sp|Q6UW49|SPESP_HUMAN

21 Jun 2021 19:57:01,454 INFO : 62% Done

21 Jun 2021 19:57:01,544 INFO : 64% Done

21 Jun 2021 19:57:01,592 INFO : 65% Done

21 Jun 2021 19:57:01,626 INFO : 66% Done

21 Jun 2021 19:57:01,660 DEBUG: Total peptides inserted: 5

21 Jun 2021 19:57:01,663 INFO : Inserting sp|P07602|SAP_HUMAN

21 Jun 2021 19:57:01,669 INFO : 67% Done

21 Jun 2021 19:57:01,711 INFO : 69% Done

21 Jun 2021 19:57:01,750 INFO : 70% Done

21 Jun 2021 19:57:01,787 INFO : 71% Done

21 Jun 2021 19:57:01,828 INFO : 73% Done

21 Jun 2021 19:57:01,883 INFO : 74% Done

21 Jun 2021 19:57:01,920 INFO : 75% Done

21 Jun 2021 19:57:01,959 INFO : 77% Done

21 Jun 2021 19:57:01,993 INFO : 78% Done

21 Jun 2021 19:57:02,020 DEBUG: Total peptides inserted: 9

21 Jun 2021 19:57:02,020 INFO : Inserting peptides1

21 Jun 2021 19:57:02,032 INFO : 80% Done

21 Jun 2021 19:57:02,084 DEBUG: Total peptides inserted: 1

21 Jun 2021 19:57:02,085 INFO : Done parsing Skyline document.

21 Jun 2021 19:57:02,088 INFO : Calculating fold changes

21 Jun 2021 19:57:02,088 DEBUG: Calculating fold change for group comparison  CoV19-R vs Control, 1 of 1

21 Jun 2021 19:57:03,090 INFO : 98% Done

21 Jun 2021 19:57:03,090 INFO : Done calculating fold changes.

21 Jun 2021 19:57:05,237 INFO : Creating and populating temp tables for Proportion values

21 Jun 2021 19:57:05,257 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

21 Jun 2021 19:57:05,327 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

21 Jun 2021 19:57:05,377 INFO : Cleaning up temp tables

21 Jun 2021 19:57:05,625 INFO : Completed import of Skyline document from Semen_Host_DR_MRM_individual_samples_2021-06-18_18-31-08.sky.zip

21 Jun 2021 19:57:05,627 INFO : 100% Done

21 Jun 2021 19:57:05,630 DEBUG: Finished trying to load data file file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20COVID-19_Semen_Proteomics_Host_8950b8a5-b532-1039-be5b-fea6ddf5138a/_temp__2021-06-21_19-56-04/export/xar/experiments_and_runs.xar.exploded/Run111756/Semen_Host_DR_MRM_individual_samples_2021-06-18_18-31-08.sky.zip into the system

21 Jun 2021 19:57:05,640 INFO : Done importing xar

21 Jun 2021 19:57:05,642 INFO : Loading pages and webpart properties

21 Jun 2021 19:57:05,709 INFO : Done importing pages and webpart properties

21 Jun 2021 19:57:05,711 INFO : 

21 Jun 2021 19:57:05,712 INFO : Experiment import completed successfully.

21 Jun 2021 19:57:05,712 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'

21 Jun 2021 19:57:05,748 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'

21 Jun 2021 19:57:05,748 INFO : 

21 Jun 2021 19:57:05,748 INFO : Finishing up experiment copy.

21 Jun 2021 19:57:05,750 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.

21 Jun 2021 19:57:05,752 INFO : Assigning a ProteomeXchange ID.

21 Jun 2021 19:57:05,928 INFO : Assigning a DOI.

21 Jun 2021 19:57:06,766 INFO : Assigned DOI: 10.6069/shzj-bp03

21 Jun 2021 19:57:06,770 INFO : Updating access URL to point to the new copy of the data.

21 Jun 2021 19:57:06,773 INFO : Setting the 'copied' timestamp and journalExperimentId on the JournalExperiment table.

21 Jun 2021 19:57:06,774 INFO : Removing copy permissions given to journal.

21 Jun 2021 19:57:06,788 INFO : Adding read permissions to all users that are folder admins in the source container.

21 Jun 2021 19:57:06,795 INFO : Setting the TargetedMS folder type to 'Experimental Data'

21 Jun 2021 19:57:06,800 INFO : Updating the 'Raw Data' tab configuration

21 Jun 2021 19:57:06,803 INFO : Updating dataFileUrls for run Semen_Host_DR_MRM_pool_2021-06-18_18-24-19.sky.zip; targetedms run ID 114171

21 Jun 2021 19:57:06,803 INFO : Updating dataFileUrl...

21 Jun 2021 19:57:06,804 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20COVID-19_Semen_Proteomics_Host_8950b8a5-b532-1039-be5b-fea6ddf5138a/_temp__2021-06-21_19-56-04/export/xar/experiments_and_runs.xar.exploded/Run111755/Semen_Host_DR_MRM_pool_2021-06-18_18-24-19/Semen_Host_DR_MRM_pool.skyd

21 Jun 2021 19:57:06,804 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/IIT%20Bombay%20Proteomics%20-%20COVID-19_Semen_Proteomics_Host/@files/Semen_Host_DR_MRM_pool_2021-06-18_18-24-19/Semen_Host_DR_MRM_pool.skyd

21 Jun 2021 19:57:06,808 INFO : Updating dataFileUrl...

21 Jun 2021 19:57:06,808 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20COVID-19_Semen_Proteomics_Host_8950b8a5-b532-1039-be5b-fea6ddf5138a/_temp__2021-06-21_19-56-04/export/xar/experiments_and_runs.xar.exploded/Run111755/Semen_Host_DR_MRM_pool_2021-06-18_18-24-19.sky.zip

21 Jun 2021 19:57:06,809 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/IIT%20Bombay%20Proteomics%20-%20COVID-19_Semen_Proteomics_Host/@files/Semen_Host_DR_MRM_pool_2021-06-18_18-24-19.sky.zip

21 Jun 2021 19:57:06,813 INFO : Updating dataFileUrls for run Semen_Host_DR_MRM_individual_samples_2021-06-18_18-31-08.sky.zip; targetedms run ID 114172

21 Jun 2021 19:57:06,813 INFO : Updating dataFileUrl...

21 Jun 2021 19:57:06,814 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20COVID-19_Semen_Proteomics_Host_8950b8a5-b532-1039-be5b-fea6ddf5138a/_temp__2021-06-21_19-56-04/export/xar/experiments_and_runs.xar.exploded/Run111756/Semen_Host_DR_MRM_individual_samples_2021-06-18_18-31-08/Semen_Host_DR_MRM_individual_samples.skyd

21 Jun 2021 19:57:06,814 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/IIT%20Bombay%20Proteomics%20-%20COVID-19_Semen_Proteomics_Host/@files/Semen_Host_DR_MRM_individual_samples_2021-06-18_18-31-08/Semen_Host_DR_MRM_individual_samples.skyd

21 Jun 2021 19:57:06,815 INFO : Updating dataFileUrl...

21 Jun 2021 19:57:06,815 INFO : from: file:///data/apache-tomcat/instance/panoramaweb/temp/Pipeline_temp/IIT%20Bombay%20Proteomics%20-%20COVID-19_Semen_Proteomics_Host_8950b8a5-b532-1039-be5b-fea6ddf5138a/_temp__2021-06-21_19-56-04/export/xar/experiments_and_runs.xar.exploded/Run111756/Semen_Host_DR_MRM_individual_samples_2021-06-18_18-31-08.sky.zip

21 Jun 2021 19:57:06,815 INFO : to: file:///data/labkey/files/Panorama%20Public/2021/IIT%20Bombay%20Proteomics%20-%20COVID-19_Semen_Proteomics_Host/@files/Semen_Host_DR_MRM_individual_samples_2021-06-18_18-31-08.sky.zip

21 Jun 2021 19:57:06,817 INFO : Creating a reviewer account.

21 Jun 2021 19:57:07,018 INFO : Created reviewer with email: User panorama+reviewer40@proteinms.net

21 Jun 2021 19:57:07,027 INFO : Hiding the Data Pipeline tab.

21 Jun 2021 19:57:07,176 INFO : Emailing submitter.

21 Jun 2021 19:57:07,309 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'