Lung_Panel-23_20191101_InspectedYes_C57.sky.zip: /Panorama Public/2020/U Victoria - Process and Workflow for Preparation of Disparate Mouse Tissues for Proteomic Analysis

Lung_Panel-23_20191101_InspectedYes_C57.sky.zip

U Victoria - Process and Workflow for Preparation of Disparate Mouse Tissues for Proteomic Analysis

Document Summary

Lung_Panel-23_20191101_InspectedYes_C57.sky.zip 1 version

163 proteins, 163 peptides, 326 precursors, 978 transitions - 41 replicates, 163 calibration curves - Skyline-daily (64-bit) 20.1.1.134 (aaca0c00f)

Peptide Calibration Curves

Peptide Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Slope Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Intercept Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Point Count Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Quadratic Coefficient Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	RSquared Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Box & Whisker Quick Chart	Error Message Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart	Protein / Label Sort Ascending Sort Descending Clear Sort Filter... Clear Filter Remove Column Summary Statistics... Bar Chart Pie Chart Quick Chart
AAGAQVVAVSR	1.8720E-1	-5.7629E-4	6	0.0000E0	0.99859		sp\|Q91X52\|DCXR_MOUSE
AALEALLGR	2.2197E-2	1.4851E-3	7	0.0000E0	0.98906		sp\|Q70IV5\|SYNEM_MOUSE
AFAAQEDLEK	2.8018E-2	9.3745E-4	7	0.0000E0	0.99975		sp\|P26043\|RADI_MOUSE
AFSPTTVNTGR	2.4500E-2	-1.3110E-3	7	0.0000E0	0.99455		sp\|P61620\|S61A1_MOUSE
AGDLGVDLTSK	4.5424E-2	-7.8351E-4	6	0.0000E0	0.99935		sp\|Q9DCW4\|ETFB_MOUSE
AIVAGDQNVEYK	1.8155E-2	-5.6626E-4	7	0.0000E0	0.99944		sp\|P97447\|FHL1_MOUSE
ALEEDLNQK	1.6424E-2	-4.4592E-4	7	0.0000E0	0.98802		sp\|O55098\|STK10_MOUSE
ALNEGINR	9.4973E-3	6.6607E-4	7	0.0000E0	0.99670		sp\|Q8K124\|PKHO2_MOUSE
ALPSPIEK	5.2581E-2	8.7881E-4	7	0.0000E0	0.97256		sp\|P01864\|GCAB_MOUSE
ALQSVGQIVGEVLK	6.9582E-3	9.3157E-4	7	0.0000E0	0.99267		sp\|P62334\|PRS10_MOUSE
ANATEFGLASGVFTR	2.3701E-2	8.1824E-4	7	0.0000E0	0.99649		sp\|Q8R0Y6\|AL1L1_MOUSE
AQIGGPEAGK	4.2103E-2	2.0089E-3	7	0.0000E0	0.97507		sp\|P14602\|HSPB1_MOUSE
ASLPGVK	1.2039E-2	6.5624E-3	7	0.0000E0	0.99728		sp\|O70251\|EF1B_MOUSE
AVFQANQENLPILK	1.3568E-2	2.6611E-4	7	0.0000E0	0.99437		sp\|Q8VDN2\|AT1A1_MOUSE
DFNHINVELSLLGK	1.0039E-2	1.9126E-3	6	0.0000E0	0.99734		sp\|P51410\|RL9_MOUSE
DHAVDLIQK	2.0292E-2	2.3426E-3	7	0.0000E0	0.99815		sp\|P01029\|CO4B_MOUSE
DIPNENELQFQIK	5.1843E-2	1.0987E-5	7	0.0000E0	0.99882		sp\|Q9DBG3\|AP2B1_MOUSE
DIPVLVATDVAAR	1.2805E-2	-2.1654E-4	7	0.0000E0	0.99671		sp\|Q810A7\|DDX42_MOUSE
DLFPYEESK	1.2933E-2	3.7155E-4	7	0.0000E0	0.99159		sp\|P51859\|HDGF_MOUSE
DLPFIVSHR	1.6555E-1	-7.8673E-6	7	0.0000E0	0.99611		sp\|Q64514\|TPP2_MOUSE
DLPSPIER	4.9847E-2	3.6099E-4	7	0.0000E0	0.98913		sp\|P01867\|IGG2B_MOUSE
DNDLISLPK	3.7159E-2	3.3295E-3	7	0.0000E0	0.99567		sp\|Q01730\|RSU1_MOUSE
DNTINLIHTFR	1.1167E-2	-7.2015E-4	7	0.0000E0	0.99955		sp\|Q9CVB6\|ARPC2_MOUSE
DQIYDIFQK	2.3286E-2	6.7608E-4	7	0.0000E0	0.99377		sp\|P60843\|IF4A1_MOUSE
DTSEDVEELVEPVAAHGPK	4.1495E-3	-4.4443E-4	6	0.0000E0	0.99980		sp\|Q3TXS7\|PSMD1_MOUSE
DVLFPGYTHLQR	2.5930E-2	-2.6489E-4	7	0.0000E0	0.99643		sp\|Q91YI0\|ARLY_MOUSE
DVLTITLTPK	2.4920E-2	1.9190E-4	7	0.0000E0	0.99145		sp\|P01869\|IGH1M_MOUSE
DVLTITLTPK	2.4899E-2	2.0374E-4	7	0.0000E0	0.99067		sp\|P01868\|IGHG1_MOUSE
DVPALEITHTFLER	1.8649E-2	7.0937E-4	7	0.0000E0	0.99443		sp\|Q64133\|AOFA_MOUSE
DYIEER	1.0093E-2	1.8624E-4	7	0.0000E0	0.99789		sp\|Q61012\|GBG1_MOUSE
EAATVEELNPK	3.1095E-1	3.4977E-5	7	0.0000E0	0.99786		sp\|Q78ZA7\|NP1L4_MOUSE
EAFQEALAAAGDK	1.6683E-2	-1.1435E-3	7	0.0000E0	0.99109		sp\|P10639\|THIO_MOUSE
EAFQLFDR	3.4127E-2	-3.2434E-4	7	0.0000E0	0.97643		sp\|Q60605\|MYL6_MOUSE
EAQLPVIENK	1.2210E-2	5.4655E-5	7	0.0000E0	0.98320		sp\|P20918\|PLMN_MOUSE
EEEFSPLK	1.0792E-2	-6.0717E-5	6	0.0000E0	0.99636		sp\|Q3TW96\|UAP1L_MOUSE
EEEVSLQGINTR	1.1880E-2	-1.0546E-3	7	0.0000E0	0.99877		sp\|Q8BH43\|WASF2_MOUSE
EELEEVIK	3.1714E-2	-9.6346E-4	7	0.0000E0	0.99588		sp\|Q9Z2U1\|PSA5_MOUSE
EFADSLGVPFLETSAK	4.4760E-3	3.2924E-4	6	0.0000E0	0.99930		sp\|Q9D1G1\|RAB1B_MOUSE
EGFFELIPQDLIK	2.3704E-2	1.0116E-3	7	0.0000E0	0.99715		sp\|P46935\|NEDD4_MOUSE
EGGLLTLAGAK	1.0669E-2	1.9240E-3	7	0.0000E0	0.99246		sp\|Q8BVI4\|DHPR_MOUSE
ELAEQLGLSTGEK	1.7775E-2	3.0136E-4	7	0.0000E0	0.99962		sp\|Q9Z1D1\|EIF3G_MOUSE
ELISQFLLNR	1.9427E-2	2.5368E-4	7	0.0000E0	0.98612		sp\|Q00897\|A1AT4_MOUSE
ELLDFVPK	7.6809E-1	1.0186E-3	7	0.0000E0	0.98183		sp\|Q02357\|ANK1_MOUSE
ELNYVAR	1.5993E-2	-1.1639E-3	7	0.0000E0	0.99618		sp\|P56380\|AP4A_MOUSE
ELVNNLAEIYGR	1.4166E-2	-3.1195E-4	7	0.0000E0	0.99222		sp\|Q9QXY6\|EHD3_MOUSE
ETVVTSTTEPSR	1.2601E-2	7.8227E-5	7	0.0000E0	0.99589		sp\|O08795\|GLU2B_MOUSE
EVSTYIK	7.4009E-3	3.2643E-4	7	0.0000E0	0.98479		sp\|P10126\|EF1A1_MOUSE
FAAATGATPIAGR	3.5941E-2	-3.2155E-4	7	0.0000E0	0.99725		sp\|P14206\|RSSA_MOUSE
FAEAFEAIPR	1.6547E-2	-8.2411E-5	7	0.0000E0	0.99353		sp\|P42932\|TCPQ_MOUSE
FAHTNIESLVK	1.2931E-2	1.4336E-3	7	0.0000E0	0.99265		sp\|P27773\|PDIA3_MOUSE
FDSEYER	9.5846E-3	-2.0905E-4	7	0.0000E0	0.97755		sp\|Q8K310\|MATR3_MOUSE
FLSKPIFAK	1.0055E-1	3.9267E-3	7	0.0000E0	0.99029		sp\|P15626\|GSTM2_MOUSE
GAAPNVVYTYTGK	4.0035E-2	8.8311E-4	7	0.0000E0	0.97977		sp\|Q6NVF9\|CPSF6_MOUSE
GAEAANVTGPGGVPVQGSK	8.0166E-3	2.5996E-3	7	0.0000E0	0.99938		sp\|P62960\|YBOX1_MOUSE
GAEILEVLHSLPAVR	8.7361E-2	5.9010E-4	7	0.0000E0	0.99926		sp\|Q99JI4\|PSMD6_MOUSE
GAIFGGFK	4.0500E-2	9.9073E-4	7	0.0000E0	0.99704		sp\|P00329\|ADH1_MOUSE
GALFGANANR	1.5245E-2	1.0051E-3	6	0.0000E0	0.99988		sp\|P50518\|VATE1_MOUSE
GEELLSPLNLEQAAYAR	5.7127E-3	7.9442E-4	7	0.0000E0	0.99748		sp\|Q9WTI7\|MYO1C_MOUSE
GEFITTVQQR	7.5934E-3	5.0565E-5	7	0.0000E0	0.98930		sp\|P14152\|MDHC_MOUSE
GEHPGLSIGDVAK	9.6552E-1	7.7029E-3	7	0.0000E0	0.99340		sp\|P63158\|HMGB1_MOUSE
GIQNDLTK	1.4168E-2	-9.1037E-6	7	0.0000E0	0.98187		sp\|Q63918\|CAVN2_MOUSE
GLLQTEPQNNQAK	1.2927E-2	-5.0004E-4	7	0.0000E0	0.99505		sp\|Q9CQ92\|FIS1_MOUSE
GPNIGLIGVSK	5.7874E-3	1.1686E-3	7	0.0000E0	0.99143		sp\|Q32Q92\|ACOT6_MOUSE
GQALITFEK	1.1615E-1	2.2249E-3	7	0.0000E0	0.99386		sp\|O35309\|NMI_MOUSE
GSGTAEVELK	2.1968E-2	-1.7223E-4	7	0.0000E0	0.98501		sp\|P52480\|KPYM_MOUSE
GTLSVVAVYHAK	9.4291E-2	2.0391E-4	7	0.0000E0	0.99835		sp\|P01027\|CO3_MOUSE
GVIVESAYSDIVK	8.7376E-3	6.5768E-4	7	0.0000E0	0.99865		sp\|Q6PD03\|2A5A_MOUSE
HGFLEEFITPIVK	0.0000E0	0.0000E0	0	0.0000E0		org.apache.commons.math3.linear.NonPositiveDefiniteMatrixException: 0 is smaller than, or equal to, the minimum (0): not positive definite matrix: value 0 at index 1	sp\|Q64511\|TOP2B_MOUSE
HLGTLNFGGIR	2.5844E-2	1.0590E-3	7	0.0000E0	0.99625		sp\|Q9Z1G4\|VPP1_MOUSE
HVEPGNAAIQEK	2.0577E-1	5.5519E-4	7	0.0000E0	0.99875		sp\|Q99KB8\|GLO2_MOUSE
IAHLAQIEDDR	1.7015E-2	2.0368E-1	2	0.0000E0	1.00000		sp\|Q6P5D8\|SMHD1_MOUSE
IEGEGSVLQAK	4.2112E-2	7.9306E-4	6	0.0000E0	0.99846		sp\|Q9EQK5\|MVP_MOUSE
IGIFGQDEDVTSK	1.5704E-2	5.1669E-4	7	0.0000E0	0.99588		sp\|O55143\|AT2A2_MOUSE
INPDGSQSVVEVPYAR	1.5016E-2	1.2228E-3	7	0.0000E0	0.98985		sp\|Q9QXT0\|CNPY2_MOUSE
IVAELQDK	3.1453E-1	6.0120E-1	5	0.0000E0	0.99319		sp\|Q99KC8\|VMA5A_MOUSE
IVLLAEGR	6.1797E-2	-1.0621E-4	7	0.0000E0	0.99312		sp\|Q68FL4\|SAHH3_MOUSE
KPLFFGEGTVLR	3.2643E-2	1.2676E-3	7	0.0000E0	0.99586		sp\|Q3V1L4\|5NTC_MOUSE
LAATNALLNSLEFTK	1.5786E-2	4.2573E-5	7	0.0000E0	0.99293		sp\|P70168\|IMB1_MOUSE
LADIQIEQLNR	8.0151E-3	4.0833E-4	7	0.0000E0	0.99475		sp\|Q9CWM4\|PFD1_MOUSE
LAQIHFPR	8.5457E-2	1.9151E-2	2	0.0000E0	1.00000		sp\|Q00896\|A1AT3_MOUSE
LAQIHFPR	8.5457E-2	1.9151E-2	2	0.0000E0	1.00000		sp\|P07758\|A1AT1_MOUSE
LDPQNHVLYSNR	5.2852E-1	-8.2438E-3	6	0.0000E0	0.99770		sp\|Q60864\|STIP1_MOUSE
LEHEYIQNFK	2.7162E-3	8.1134E-4	7	0.0000E0	0.99748		sp\|Q61166\|MARE1_MOUSE
LFEAEAQDLFR	2.0622E-2	1.9538E-4	7	0.0000E0	0.99396		sp\|Q9EQP2\|EHD4_MOUSE
LGITHVLNAAEGR	0.0000E0	0.0000E0	0	0.0000E0		Unable to calculate curve, since there are no data points available	sp\|Q9D7X3\|DUS3_MOUSE
LGVEFDEITADDR	1.1229E-2	5.6089E-4	7	0.0000E0	0.97610		sp\|P04117\|FABP4_MOUSE
LIEDFLAR	2.3396E-2	-5.9716E-5	6	0.0000E0	0.99817		sp\|O55013\|TPPC3_MOUSE
LLDYVPIGPR	2.4026E-2	-8.1604E-4	7	0.0000E0	0.99865		sp\|P46460\|NSF_MOUSE
LLLDGAPLIAIHK	3.8739E-3	1.6048E-3	7	0.0000E0	0.90324		sp\|Q3UGR5\|HDHD2_MOUSE
LLQAVENGDAEK	1.5499E-2	1.9201E-4	7	0.0000E0	0.99988		sp\|Q9EP71\|RAI14_MOUSE
LPEAIEEVK	2.0144E-2	1.1982E-3	7	0.0000E0	0.98252		sp\|Q91Z53\|GRHPR_MOUSE
LSILYPATTGR	4.3114E-2	-1.4264E-3	7	0.0000E0	0.96935		sp\|O08709\|PRDX6_MOUSE
LVALLDTLDR	4.8158E-2	1.1393E-3	7	0.0000E0	0.57635		sp\|P58389\|PTPA_MOUSE
LVDTLPQETR	7.7477E-3	3.5539E-5	7	0.0000E0	0.99471		sp\|Q06318\|UTER_MOUSE
LVESGFTTDPVTIENK	6.7478E-3	-3.5269E-4	7	0.0000E0	0.99134		sp\|P01872\|IGHM_MOUSE
LVIIESDLER	8.0312E-2	2.5658E-3	7	0.0000E0	0.99811		sp\|P58771\|TPM1_MOUSE
LVILEGELER	4.4215E-2	3.6206E-4	7	0.0000E0	0.98958		sp\|P58774\|TPM2_MOUSE
LYEQLSGK	3.0989E-2	2.1507E-5	7	0.0000E0	0.97729		sp\|P70296\|PEBP1_MOUSE
NDEGIAYR	1.1277E-2	-2.2194E-4	7	0.0000E0	0.99954		sp\|Q61171\|PRDX2_MOUSE
NFTDVHPDYGAR	2.2123E-2	2.8559E-4	7	0.0000E0	0.99974		sp\|P24270\|CATA_MOUSE