MacCoss - Lysosome and Liver DIA Quant

MacCoss - Lysosome and Liver DIA Quant
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20240429_OG_Dataset6.sky.zip2024-05-01 05:14:22101935791
20240429_OG_Dataset6_filtered.sky.zip2024-05-01 05:13:1510802401
20240429_U87MGNG_Dataset4_filtered.sky.zip2024-05-01 05:10:0910471411
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2023_10_13_Dap8_PW_V_Singh_DGDGs_2023-12-04_15-29-42.sky.zip2024-04-30 20:58:3610182916
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20240429_CSFNG_Dataset2_2024-05-01.sky.zip2024-04-30 19:10:16101,4804,4401
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20240429_PermFet_Dataset3.sky.zip2024-04-30 10:09:10103,37010,1101
20240429_Fetuin_Dataset1_filtered.sky.zip2024-04-30 10:08:431029871
figure7_DIA_samples.sky.zip2024-04-09 15:12:492212125133
figure6_PRM_system_suitability_2024-02-05_19-48-55.sky.zip2024-04-09 15:12:422171718948
figure6_DIA_samples_2024-02-06_13-03-26.sky.zip2024-04-09 15:12:2722121251157
figure5_DIA_samples.sky.zip2024-04-09 15:12:182212125115
figure5_PRM_system_suitability.sky.zip2024-04-09 15:12:18217171896
figure4_PRM_system_suitability.sky.zip2024-04-09 15:12:092171718914
figure4_DIA_samples.sky.zip2024-04-09 15:12:092212125132
figure3_PRM_system_suitability.sky.zip2024-04-09 15:12:042171718937
figure2_PRM_system_suitability_2024-02-02_13-59-23.sky.zip2024-04-09 15:11:542171718985
NV0001_Mouse-Skin_mProphet_Panorama_2024-03-09_19-20-18.sky.zip2024-03-10 20:30:291,6595,7905,79028,90434
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Lumos-Jax-Cortex-DIA-ind-8mz-ovlp-400to1000-C2_B07.sky.zip2024-02-18 11:31:099,778127,624127,624966,34712
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Lumos-Jax-Cortex-DIA-ind-8mz-ovlp-400to1000-C1_B12.sky.zip2024-02-16 16:13:309,778127,624127,624966,34716
XW0008-Myc248_DIAassayLIB_OmBcells_17Nov2023_2024-02-16_10-02-13.sky.zip2024-02-16 15:02:065,20383,67483,675605,04024
Lumos-Jax-Cortex-DIA-ind-8mz-ovlp-400to1000-C1_B11.sky.zip2024-02-16 11:03:589,778127,624127,624966,34716
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Lumos-Jax-Cortex-DIA-ind-8mz-ovlp-400to1000-C1_B08.sky.zip2024-02-16 08:20:059,778127,624127,624966,34716
Lumos-Jax-Cortex-DIA-ind-8mz-ovlp-400to1000-C1_B07.sky.zip2024-02-16 01:08:409,778127,624127,624966,34716
Lumos-Jax-Cortex-DIA-ind-8mz-ovlp-400to1000-C1_B06.sky.zip2024-02-16 00:17:379,778127,624127,624966,34716
Lumos-Jax-Cortex-DIA-ind-8mz-ovlp-400to1000-C1_B05.sky.zip2024-02-15 23:29:389,778127,624127,624966,34716
XW0008_nanos3_DIAassayLIB_OmBcells_17Nov2023_2024-02-15_17-02-46.sky.zip2024-02-15 21:13:165,20383,67483,675605,04024
Lumos-Jax-Cortex-DIA-ind-8mz-ovlp-400to1000-C1_B04.sky.zip2024-02-15 16:37:369,778127,624127,624966,34716
Lumos-Jax-Cortex-DIA-ind-8mz-ovlp-400to1000-C1_B03.sky.zip2024-02-15 14:42:299,778127,624127,624966,34716
Lumos-Jax-Cortex-DIA-ind-8mz-ovlp-400to1000-C1_B02.sky.zip2024-02-15 13:44:359,778127,624127,624966,34716
Lumos-Jax-Cortex-DIA-ind-8mz-ovlp-400to1000-C1_B01.sky.zip2024-02-15 12:45:409,778127,624127,624966,34716
AutoQC-lumos-PCs-MouAD-PFC-C2-B5-B7.sky.zip2024-02-14 16:42:502141417344
AutoQC-lumos-PCs-MouAD-PFC-C2-B1-B4.sky.zip2024-02-14 16:42:332141417364
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AutoQC-lumos-PCs-MouAD-PFC-C1-B21-B24.sky.zip2024-02-14 16:41:002141417364
AutoQC-lumos-PCs-MouAD-PFC-C1-B17-B20.sky.zip2024-02-14 16:40:442141417365
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AutoQC-lumos-PCs-MouAD-PFC-C1-B1-B3.sky.zip2024-02-14 16:40:082141417347
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AutoQC-lumos-SysS-MouAD-PFC-C1-B17-B20.sky.zip2024-02-14 14:48:381889410
ZipChip_HR_Metabolomics_2024Protocol_2024-02-05_17-24-05.sky.zip2024-02-05 14:24:28100821594
22AminoAcids_Fully13CLabeled_2024-01-29_14-30-52.sky.zip2024-01-29 11:32:1410444936
RBD_M_Glyco_2024-01-25_15-29-41.sky.zip2024-01-26 17:23:2672923972,3829
20240104_Neg_FMT_MCBAs_isoRemove_Cleaned_Final_2024-01-25_21-40-19.sky.zip2024-01-26 16:43:471010030056
20231220_Neg_FMT_BA_Full_reduce_Res50_High_final_2024-01-04_15-44-59.sky.zip2024-01-26 16:43:47405112176
P179_UNCSet1_ACE_v0p3_2024-01-24_22-42-18.sky.zip2024-01-24 19:51:4423034963724
P179_UNCSet2_ACE_v0p3_2024-01-24_22-37-25.sky.zip2024-01-24 19:40:1117021336726
New_iRBD2024-01-15 23:30:5233474794292
Paired_CSF_Plasma_Serum2024-01-15 23:30:523347479460
Initial_Targeted_Proteomics2024-01-15 23:30:5233474794441
TPAD_VL_CSF_PRTC_APOA1_2024-01-07_23-01-46.sky.zip2024-01-07 23:08:493464642412
TPAD-CSF-SP3_1-5.sky.zip2024-01-05 06:03:432,90823,74323,743189,895396
173_peptides_iRTs_chromatogram_library_2023-12-22_00-47-19.sky.zip2023-12-22 01:06:36311833561,0822
Figure_8B_Freiburg_ALG1-CDG-Patients_Comparison_2023-12-22_02-34-55.sky.zip2023-12-22 01:06:2022691284006
Figures_4_5_6_7_8A_Heidelberg_CDG-Patients_2023-12-22_02-32-43.sky.zip2023-12-22 01:06:20206712439014
Lysosomal targetomics in ghrKO mice reveals a role for chaperone-mediated autophagy in shaping the nucleocytosolic acetyl-coA production pathway
Data License: CC BY 4.0 | ProteomeXchange: PXD023309
  • Organism: Mus musculus
  • Instrument: Q Exactive HF
  • SpikeIn: No
  • Keywords: Aging, Chaperone-mediated autophagy, Endocrine regulation of autophagy, Endocrine regulation of aging, Acetyl-coA metabolism
  • Lab head: Richard A. Miller Submitter: Michael MacCoss
Abstract
Mice deficient for growth hormone receptor (ghrKO) have a dramatic lifespan extension, through an unknown mechanism. Compared to normal littermates,ghrKO mice have elevated levels of hepatic chaperone-mediated autophagy (CMA). Using quantitative proteomics to identify protein changes in purified liver lysosomes and whole liver lysates, we provide evidence that elevated CMA in ghrKO mice specifically downregulates proteins involved in ribosomal structure, translation initiation and elongation, and nucleocytosolic acetyl-coA production. Using a combination of cell culture and mouse models, we show that CMA is both necessary and sufficient to regulate the abundance of ACLY and ACSS2, the two enzymes that produce nucleocytosolic (but not mitochondrial) acetyl-coA. Degradation of ACLY and ACSS2 by CMA prevents aberrant accumulation of lipid droplets in NIH3T3 cells. Nucleocytosolic acetyl-coA has been implicated in longevity. Elevated CMA in ghrKO mice might contribute to their long lifespan by diminishing nucleocytoplasmic acetyl-coA availability.
Created on 12/24/20, 10:41 AM