Copying experiment: A dataset describing a suite of novel antibody reagents for the RAS signaling network: /Panorama Public/2018/Paulovich

Copying experiment: A dataset describing a suite of novel antibody reagents for the RAS signaling network

Paulovich - RAS_immunoMRM_Antibody_Development

Job Status

Created:

2018-12-21 14:40:41

Modified:

2020-04-20 22:35:26

Email:

vsharma@uw.edu

Status:

ERROR

Info:

Error during job execution

Description:

Copying experiment: A dataset describing a suite of novel antibody reagents for the RAS signaling network

File Path:

/data/labkey/files/Panorama Public/2018/Paulovich - RAS_immunoMRM_Antibody_Development/@files/Experiment_663.log

Files:

Experiment_663.log

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Log File

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21 Dec 2018 14:40:41,902 INFO : Copying experiment "A dataset describing a suite of novel antibody reagents for the RAS signaling network" from folder /Paulovich/Published_datasets/RAS_immunoMRM_Antibody_Development to /Panorama Public/2018/Paulovich - RAS_immunoMRM_Antibody_Development

21 Dec 2018 14:40:41,903 INFO : =======================================

21 Dec 2018 14:40:42,040 INFO : Starting to run task 'org.labkey.targetedms.pipeline.ExperimentExportTask' at location 'webserver'

21 Dec 2018 14:40:42,041 INFO :

21 Dec 2018 14:40:42,041 INFO : Exporting experiment.

21 Dec 2018 14:40:50,423 FATAL:

21 Dec 2018 14:40:50,619 FATAL: Exception during experiment export
java.lang.NullPointerException
	at org.labkey.experiment.api.ExperimentServiceImpl.populateRun(ExperimentServiceImpl.java:4757)
	at org.labkey.experiment.api.ExpRunImpl.ensureFullyPopulated(ExpRunImpl.java:580)
	at org.labkey.experiment.api.ExpRunImpl.getDataInputs(ExpRunImpl.java:403)
	at org.labkey.experiment.XarExporter.addExperimentRun(XarExporter.java:252)
	at org.labkey.experiment.xar.XarExportSelection.addContent(XarExportSelection.java:124)
	at org.labkey.experiment.XarExporter.<init>(XarExporter.java:161)
	at org.labkey.experiment.xar.FolderXarWriterFactory$FolderXarWriter.write(FolderXarWriterFactory.java:111)
	at org.labkey.experiment.xar.FolderXarWriterFactory$FolderXarWriter.write(FolderXarWriterFactory.java:55)
	at org.labkey.api.admin.FolderWriterImpl.write(FolderWriterImpl.java:74)
	at org.labkey.targetedms.pipeline.ExperimentExportTask.writeExperiment(ExperimentExportTask.java:122)
	at org.labkey.targetedms.pipeline.ExperimentExportTask.doExport(ExperimentExportTask.java:72)
	at org.labkey.targetedms.pipeline.ExperimentExportTask.run(ExperimentExportTask.java:59)
	at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:805)
	at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1036)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
	at java.util.concurrent.FutureTask.run(FutureTask.java:266)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

21 Dec 2018 14:40:50,625 FATAL: Experiment export FAILED

21 Dec 2018 14:40:50,631 INFO : Failed to complete task 'org.labkey.targetedms.pipeline.ExperimentExportTask'

21 Dec 2018 14:40:50,632 ERROR: Error during job execution
org.labkey.targetedms.pipeline.ExperimentExportTask$1: Error during job execution
	at org.labkey.targetedms.pipeline.ExperimentExportTask.doExport(ExperimentExportTask.java:81)
	at org.labkey.targetedms.pipeline.ExperimentExportTask.run(ExperimentExportTask.java:59)
	at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:805)
	at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1036)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
	at java.util.concurrent.FutureTask.run(FutureTask.java:266)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.NullPointerException
	at org.labkey.experiment.api.ExperimentServiceImpl.populateRun(ExperimentServiceImpl.java:4757)
	at org.labkey.experiment.api.ExpRunImpl.ensureFullyPopulated(ExpRunImpl.java:580)
	at org.labkey.experiment.api.ExpRunImpl.getDataInputs(ExpRunImpl.java:403)
	at org.labkey.experiment.XarExporter.addExperimentRun(XarExporter.java:252)
	at org.labkey.experiment.xar.XarExportSelection.addContent(XarExportSelection.java:124)
	at org.labkey.experiment.XarExporter.<init>(XarExporter.java:161)
	at org.labkey.experiment.xar.FolderXarWriterFactory$FolderXarWriter.write(FolderXarWriterFactory.java:111)
	at org.labkey.experiment.xar.FolderXarWriterFactory$FolderXarWriter.write(FolderXarWriterFactory.java:55)
	at org.labkey.api.admin.FolderWriterImpl.write(FolderWriterImpl.java:74)
	at org.labkey.targetedms.pipeline.ExperimentExportTask.writeExperiment(ExperimentExportTask.java:122)
	at org.labkey.targetedms.pipeline.ExperimentExportTask.doExport(ExperimentExportTask.java:72)
	... 10 more