| | | Protein Note/Annotations | | Peptide Note/Annotations | | | | | Precursor Note/Annotations | | | | | | | |
| iRT-standards | | |  SAYQQAQGVK | | 0 | 1078.5407 | |  SAYQQAQGVK | | light | 2+ | 540.2776 | 1078.5407 | 5 | 11.9912 | |
| iRT-standards | | | ETTAAASSAIK | | 0 | 1048.5401 | | ETTAAASSAIK | | light | 2+ | 525.2773 | 1048.5401 | 5 | 11.2261 | |
| iRT-standards | | | HSADMEALR | | 0 | 1028.4709 | | HSADMEALR | | light | 2+ | 515.2427 | 1028.4709 | 5 | 10.7144 | |
| iRT-standards | | | VSVNVEETK | | 0 | 1003.5186 | | VSVNVEETK | | light | 2+ | 502.7666 | 1003.5186 | 5 | 10.0781 | |
| iRT-standards | | | IEDMHVQVK | | 0 | 1097.5539 | | IEDMHVQVK | | light | 2+ | 549.7842 | 1097.5539 | 5 | 12.4760 | |
| iRT-standards | | | ALDHLDDAEYK | | 0 | 1288.5935 | | ALDHLDDAEYK | | light | 3+ | 430.5385 | 1288.5935 | 5 | 6.1459 | |
| iRT-standards | | | DGAGDVAFVK | | 0 | 977.4818 | | DGAGDVAFVK | | light | 2+ | 489.7482 | 977.4818 | 5 | 9.4142 | |
| iRT-standards | | | YYGYAGALK | | 0 | 1004.4967 | | YYGYAGALK | | light | 2+ | 503.2556 | 1004.4967 | 5 | 10.1030 | |
| iRT-standards | | | IAPLAEDIK | | 0 | 968.5542 | | IAPLAEDIK | | light | 2+ | 485.2844 | 968.5542 | 5 | 9.1865 | |
| iRT-standards | | | TMVGPYVEEYK | | 0 | 1314.6166 | | TMVGPYVEEYK | | light | 2+ | 658.3156 | 1314.6166 | 5 | 18.0111 | |
| iRT-standards | | | NEYELICPGK | | 0 | 1164.5485 | | NEYELICPGK | | light | 2+ | 583.2815 | 1164.5485 | 5 | 14.1844 | |
| iRT-standards | | | STIQDIFSK | | 0 | 1037.5393 | | STIQDIFSK | | light | 2+ | 519.7769 | 1037.5393 | 5 | 10.9456 | |
| iRT-standards | | | MDYEVVGPAALTR | | 0 | 1420.7021 | | MDYEVVGPAALTR | | light | 2+ | 711.3583 | 1420.7021 | 5 | 20.7163 | |
| iRT-standards | | | MDYEVVGPAALTR | | 0 | 1420.7021 | | MDYEVVGPAALTR | | light | 3+ | 474.5746 | 1420.7021 | 5 | 7.7753 | |
| iRT-standards | | | ASVMADIEALK | | 0 | 1146.5955 | | ASVMADIEALK | | light | 2+ | 574.3050 | 1146.5955 | 5 | 13.7266 | |
| iRT-standards | | | AALIPIVEAVR | | 0 | 1150.7074 | | AALIPIVEAVR | | light | 2+ | 576.3610 | 1150.7074 | 5 | 13.8314 | |
| iRT-standards | | | MQAIFGLITESIQHS | | 0 | 1673.8447 | | MQAIFGLITESIQHS | | light | 2+ | 837.9296 | 1673.8447 | 5 | 27.1714 | |
| iRT-standards | | | MQAIFGLITESIQHS | | 0 | 1673.8447 | | MQAIFGLITESIQHS | | light | 3+ | 558.9555 | 1673.8447 | 5 | 10.8974 | |
| B0ZSJ9 | Vitellogenin | |  ITSALAAQLTTPIK | | 0 | 1426.8395 | 1 | ITSALAAQLTTPIK | | light | 2+ | 714.4270 | 1426.8395 | 5 | 20.8728 | |
| B0ZSJ9 | Vitellogenin | | FEYSNGVVGK | | 0 | 1098.5346 | 2 | FEYSNGVVGK | | light | 2+ | 550.2746 | 1098.5346 | 5 | 12.5010 | |
| B0ZSJ9 | Vitellogenin | | AAAASNYVIK | | 0 | 1006.5447 | 3 | AAAASNYVIK | | light | 2+ | 504.2796 | 1006.5447 | 5 | 10.1553 | |
| G3N3Z8 | Dynein light chain roadblock-type 1 | | TTLDNASTVQYAGLIHQLVMK | | 0 | 2302.1991 | 2 | TTLDNASTVQYAGLIHQLVMK | | light | 3+ | 768.4070 | 2302.1991 | 5 | 18.6471 | |
| G3N3Z8 | Dynein light chain roadblock-type 1 | | DIDPQNDLTFLR | | 0 | 1445.7151 | 1 | DIDPQNDLTFLR | | light | 2+ | 723.8648 | 1445.7151 | 5 | 21.3541 | |
| G3N405 | Cytochrome c oxidase subunit 6C | | YGVTEPR | | 0 | 820.4079 | 3 | YGVTEPR | | light | 2+ | 411.2112 | 820.4079 | 5 | 5.4088 | |
| G3N405 | Cytochrome c oxidase subunit 6C | | AYADFYK | | 0 | 876.4018 | 2 | AYADFYK | | light | 2+ | 439.2082 | 876.4018 | 4 | 6.8366 | |
| G3N405 | Cytochrome c oxidase subunit 6C | | EAGVFESVQPSGE | | 0 | 1334.5990 | 1 | EAGVFESVQPSGE | | light | 2+ | 668.3068 | 1334.5990 | 5 | 18.5206 | |
| G3N4A6 | Collagen alpha-1 type XI chain | | ALQVPSLPEGVK | | 0 | 1236.7078 | 2 | ALQVPSLPEGVK | | light | 2+ | 619.3612 | 1236.7078 | 5 | 16.0244 | |
| G3N4A6 | Collagen alpha-1 type XI chain | | SKPIAPPAK | | 0 | 907.5491 | 3 | SKPIAPPAK | | light | 2+ | 454.7818 | 907.5491 | 5 | 7.6309 | |
| G3N4A6 | Collagen alpha-1 type XI chain | | GELGMSGPR | | 0 | 902.4280 | 1 | GELGMSGPR | | light | 2+ | 452.2213 | 902.4280 | 5 | 7.5003 | |
| G3N4A6 | Collagen alpha-1 type XI chain | | GEVGFQGK | | 0 | 820.4079 | 4 | GEVGFQGK | | light | 2+ | 411.2112 | 820.4079 | 5 | 5.4088 | |
| G3N4E2 | Major histocompatibility complex class I-related gene protein | | NYLTHVCPEWVK | | 0 | 1487.7231 | 2 | NYLTHVCPEWVK | | light | 3+ | 496.9150 | 1487.7231 | 5 | 8.6019 | |
| G3N4E2 | Major histocompatibility complex class I-related gene protein | | TERPSVSLLQK | | 0 | 1256.7089 | 1 | TERPSVSLLQK | | light | 3+ | 419.9102 | 1256.7089 | 5 | 5.7527 | |
| G3N4E2 | Major histocompatibility complex class I-related gene protein | | ADLFWR | | 0 | 806.4075 | 3 | ADLFWR | | light | 2+ | 404.2110 | 806.4075 | 4 | 5.0518 | |
| G3N4J5 | Actin-related protein 2A | | DLMVGDEASELR | | 0 | 1333.6184 | 3 | DLMVGDEASELR | | light | 2+ | 667.8165 | 1333.6184 | 5 | 18.4956 | |
| G3N4J5 | Actin-related protein 2A | | SMLEVNYPMENGIVR | | 0 | 1750.8382 | 4 | SMLEVNYPMENGIVR | | light | 2+ | 876.4264 | 1750.8382 | 5 | 29.1347 | |
| G3N4J5 | Actin-related protein 2A | | HIVLSGGSTMYPGLPSR | | 0 | 1770.9087 | 2 | HIVLSGGSTMYPGLPSR | | light | 3+ | 591.3102 | 1770.9087 | 5 | 12.0945 | |
| G3N4J5 | Actin-related protein 2A | | HMVFLGGAVLADIMK | | 0 | 1600.8469 | 1 | HMVFLGGAVLADIMK | | light | 3+ | 534.6229 | 1600.8469 | 5 | 9.9970 | |
| G3N4P6 | Chloride channel protein 2 | | IDPAPIQLVER | | 0 | 1249.7030 | 1 | IDPAPIQLVER | | light | 2+ | 625.8588 | 1249.7030 | 5 | 16.3558 | |
| G3N4P6 | Chloride channel protein 2 | | LIGVVSLK | | 0 | 827.5480 | 2 | LIGVVSLK | | light | 2+ | 414.7813 | 827.5480 | 4 | 5.5908 | |
| G3N4Q5 | Proteasome non-ATPase regulatory subunit 2 | | LNILDTLSK | | 0 | 1015.5914 | 3 | LNILDTLSK | | light | 2+ | 508.8030 | 1015.5914 | 5 | 10.3860 | |
| G3N4Q5 | Proteasome non-ATPase regulatory subunit 2 | | VGQAVDVVGQAGKPK | | 0 | 1451.8096 | 2 | VGQAVDVVGQAGKPK | | light | 3+ | 484.9438 | 1451.8096 | 5 | 8.1589 | |
| G3N4Q5 | Proteasome non-ATPase regulatory subunit 2 | | AITGFQTHTTPVLLAHGER | | 0 | 2048.0803 | 1 | AITGFQTHTTPVLLAHGER | | light | 4+ | 513.0274 | 2048.0803 | 5 | 9.1980 | |
| G3N4S6 | Alpha-mannosidase, lysosomal | | FSVNVYNPLVR | | 0 | 1306.7034 | 3 | FSVNVYNPLVR | | light | 2+ | 654.3590 | 1306.7034 | 5 | 17.8093 | |
| G3N4S6 | Alpha-mannosidase, lysosomal | | AVIWPVR | | 0 | 839.5018 | 1 | AVIWPVR | | light | 2+ | 420.7582 | 839.5018 | 5 | 5.8957 | |
| G3N4S6 | Alpha-mannosidase, lysosomal | | APTAIQNQFLR | | 0 | 1257.6830 | 2 | APTAIQNQFLR | | light | 2+ | 629.8488 | 1257.6830 | 5 | 16.5593 | |
| G3N4W6 | Phenylalanyl-tRNA synthetase beta chain | | TTLLPGLLK | | 0 | 954.6114 | 1 | TTLLPGLLK | | light | 2+ | 478.3130 | 954.6114 | 5 | 8.8310 | |
| G3N4W6 | Phenylalanyl-tRNA synthetase beta chain | | LFEISDVVLK | | 0 | 1161.6645 | 2 | LFEISDVVLK | | light | 2+ | 581.8395 | 1161.6645 | 5 | 14.1108 | |
| G3N4Y0 | Translocon-associated protein subunit alpha | | ASPNADTTILFVK | | 0 | 1375.7347 | 1 | ASPNADTTILFVK | | light | 2+ | 688.8746 | 1375.7347 | 5 | 19.5696 | |
| G3N4Y0 | Translocon-associated protein subunit alpha | | FLLGFSNK | | 0 | 924.5069 | 2 | FLLGFSNK | | light | 2+ | 463.2607 | 924.5069 | 5 | 8.0633 | |
| G3N4Z0 | Aspartate aminotransferase, cytoplasmic | | VALGDGSAAIK | | 0 | 1000.5553 | 1 | VALGDGSAAIK | | light | 2+ | 501.2849 | 1000.5553 | 5 | 10.0025 | |
| G3N4Z0 | Aspartate aminotransferase, cytoplasmic | | VGGVQALGGTGALR | | 0 | 1254.7044 | 2 | VGGVQALGGTGALR | | light | 2+ | 628.3595 | 1254.7044 | 5 | 16.4833 | |
| G3N4Z0 | Aspartate aminotransferase, cytoplasmic | | IGAEFLR | | 0 | 804.4494 | 3 | IGAEFLR | | light | 2+ | 403.2320 | 804.4494 | 5 | 5.0018 | |
| G3N4Z2 | Titin | | LIVEELPVK | | 0 | 1038.6325 | 1 | LIVEELPVK | | light | 2+ | 520.3235 | 1038.6325 | 5 | 10.9735 | |
| G3N4Z2 | Titin | | ENAEVQWFR | | 0 | 1177.5516 | 2 | ENAEVQWFR | | light | 2+ | 589.7831 | 1177.5516 | 5 | 14.5159 | |
| G3N4Z2 | Titin | | LTVLEK | | 0 | 701.4323 | 3 | LTVLEK | | light | 1+ | 702.4396 | 701.4323 | 5 | 20.2614 | |
| G3N508 | Myosin light chain kinase smooth muscle | | ILSKPQSLTVEEGSLAR | | 0 | 1827.0102 | 1 | ILSKPQSLTVEEGSLAR | | light | 3+ | 610.0107 | 1827.0102 | 5 | 12.7864 | |
| G3N508 | Myosin light chain kinase smooth muscle | | LIDFGLAR | | 0 | 903.5178 | 2 | LIDFGLAR | | light | 2+ | 452.7662 | 903.5178 | 4 | 7.5281 | |
| G3N515 | Titin | | LELAAVPK | | 0 | 839.5117 | 1 | LELAAVPK | | light | 2+ | 420.7631 | 839.5117 | 4 | 5.8959 | |
| G3N515 | Titin | | VPITGYPTPVAK | | 0 | 1241.7020 | 2 | VPITGYPTPVAK | | light | 2+ | 621.8583 | 1241.7020 | 5 | 16.1518 | |
| G3N515 | Titin | | IELPADVK | | 0 | 883.5015 | 3 | IELPADVK | | light | 2+ | 442.7580 | 883.5015 | 5 | 7.0177 | |
| G3N517 | Actin, alpha | | DSYIGYQAQSK | | 0 | 1258.5830 | 2 | DSYIGYQAQSK | | light | 2+ | 630.2988 | 1258.5830 | 4 | 16.5822 | |
| G3N517 | Actin, alpha | | GILTLK | | 0 | 643.4269 | 3 | GILTLK | | light | 1+ | 644.4341 | 643.4269 | 4 | 17.3031 | |
| G3N517 | Actin, alpha | | DLTDYLMK | | 0 | 997.4790 | 1 | DLTDYLMK | | light | 2+ | 499.7468 | 997.4790 | 5 | 9.9241 | |
| G3N551 | RLA class II histocompatibility antigen DP alpha-1 | | DPPSSHMIYPK | | 0 | 1270.6016 | 3 | DPPSSHMIYPK | | light | 2+ | 636.3081 | 1270.6016 | 5 | 16.8887 | |
| G3N551 | RLA class II histocompatibility antigen DP alpha-1 | | DGVELGEK | | 0 | 845.4131 | 2 | DGVELGEK | | light | 2+ | 423.7138 | 845.4131 | 5 | 6.0464 | |
| G3N551 | RLA class II histocompatibility antigen DP alpha-1 | | LGDIYSCMVEHLALDHPLVK | | 0 | 2252.1333 | 1 | LGDIYSCMVEHLALDHPLVK | | light | 4+ | 564.0406 | 2252.1333 | 5 | 11.0855 | |
| G3N556 | Proteasome subunit alpha type-5 / Macropain zeta | | ITSPLMEPNSIEK | | 0 | 1457.7436 | 4 | ITSPLMEPNSIEK | | light | 2+ | 729.8791 | 1457.7436 | 5 | 21.6608 | |
| G3N556 | Proteasome subunit alpha type-5 / Macropain zeta | | HMDPSGTFVQCDAR | | 0 | 1562.6606 | 2 | HMDPSGTFVQCDAR | | light | 3+ | 521.8941 | 1562.6606 | 5 | 9.5261 | |
| G3N556 | Proteasome subunit alpha type-5 / Macropain zeta | | AIGSASEGAQSSLQEVYHK | | 0 | 1960.9490 | 1 | AIGSASEGAQSSLQEVYHK | | light | 3+ | 654.6570 | 1960.9490 | 5 | 14.4383 | |
| G3N556 | Proteasome subunit alpha type-5 / Macropain zeta | | LNATNIELATVEPGK | | 0 | 1568.8410 | 5 | LNATNIELATVEPGK | | light | 2+ | 785.4278 | 1568.8410 | 5 | 24.4938 | |
| G3N556 | Proteasome subunit alpha type-5 / Macropain zeta | | EELEDVIK | | 0 | 973.4968 | 3 | EELEDVIK | | light | 2+ | 487.7557 | 973.4968 | 5 | 9.3125 | |
| G3N560 | H-2 class II histocompatibility antigen I-A beta chain | | SAEPYVR | | 0 | 820.4079 | 1 | SAEPYVR | | light | 2+ | 411.2112 | 820.4079 | 5 | 5.4088 | |
| G3N560 | H-2 class II histocompatibility antigen I-A beta chain | | ISCVVEHISLSKPLVTDWNPSMPESER | | 0 | 3052.4998 | 2 | ISCVVEHISLSKPLVTDWNPSMPESER | | light | 4+ | 764.1322 | 3052.4998 | 5 | 18.4889 | |
| G3N574 | Voltage-dependent anion-selective channel protein 2 | | ELGLSFNQK | | 0 | 1034.5397 | 1 | ELGLSFNQK | | light | 2+ | 518.2771 | 1034.5397 | 5 | 10.8691 | |
| G3N574 | Voltage-dependent anion-selective channel protein 2 | | VALDTSFVPNTGK | | 0 | 1347.7034 | 4 | VALDTSFVPNTGK | | light | 2+ | 674.8590 | 1347.7034 | 5 | 18.8548 | |
| G3N574 | Voltage-dependent anion-selective channel protein 2 | | LAQNNFALGYR | | 0 | 1265.6517 | 3 | LAQNNFALGYR | | light | 2+ | 633.8331 | 1265.6517 | 5 | 16.7625 | |
| G3N574 | Voltage-dependent anion-selective channel protein 2 | | VTLSALIDGK | | 0 | 1015.5914 | 2 | VTLSALIDGK | | light | 2+ | 508.8030 | 1015.5914 | 5 | 10.3860 | |
| G3N577 | Actin, beta | | SYELPDGQVITIGNER | | 0 | 1789.8846 | 1 | SYELPDGQVITIGNER | | light | 2+ | 895.9496 | 1789.8846 | 5 | 30.1304 | |
| G3N577 | Actin, beta | | IVAPPER | | 0 | 780.4494 | 2 | IVAPPER | | light | 2+ | 391.2320 | 780.4494 | 5 | 4.3898 | |
| G3N599 | Complement factor I | | GSCDLVFCPPWER | | 0 | 1507.6588 | 2 | GSCDLVFCPPWER | | light | 2+ | 754.8367 | 1507.6588 | 5 | 22.9337 | |
| G3N599 | Complement factor I | | IFLPDAR | | 0 | 830.4650 | 1 | IFLPDAR | | light | 2+ | 416.2398 | 830.4650 | 5 | 5.6652 | |
| G3N599 | Complement factor I | | SPGGGEELLVCQR | | 0 | 1343.6503 | 3 | SPGGGEELLVCQR | | light | 2+ | 672.8325 | 1343.6503 | 5 | 18.7515 | |
| G3N599 | Complement factor I | | YGANYENDIALLK | | 0 | 1482.7355 | 4 | YGANYENDIALLK | | light | 2+ | 742.3750 | 1482.7355 | 5 | 22.2981 | |
| G3N5C8 | Creatine kinase S-type | | LYPPSSDFPDLR | | 0 | 1405.6878 | 1 | LYPPSSDFPDLR | | light | 2+ | 703.8512 | 1405.6878 | 5 | 20.3334 | |
| G3N5C8 | Creatine kinase S-type | | VTPNNWTLDQSIQTGVDNPGHPFIK | | 0 | 2777.3773 | 4 | VTPNNWTLDQSIQTGVDNPGHPFIK | | light | 3+ | 926.7997 | 2777.3773 | 5 | 24.5076 | |
| G3N5C8 | Creatine kinase S-type | | ITNAMFDEK | | 0 | 1067.4957 | 2 | ITNAMFDEK | | light | 2+ | 534.7551 | 1067.4957 | 5 | 11.7095 | |
| G3N5C8 | Creatine kinase S-type | | VVVTALAGLK | | 0 | 969.6223 | 3 | VVVTALAGLK | | light | 2+ | 485.8184 | 969.6223 | 5 | 9.2137 | |
| G3N5C8 | Creatine kinase S-type | | GWEFMWNER | | 0 | 1253.5288 | 6 | GWEFMWNER | | light | 2+ | 627.7717 | 1253.5288 | 5 | 16.4534 | |
| G3N5C8 | Creatine kinase S-type | | LGYILTCPSNLGTGLR | | 0 | 1676.8920 | 5 | LGYILTCPSNLGTGLR | | light | 2+ | 839.4533 | 1676.8920 | 5 | 27.2491 | |
| G3N5E0 | Keratocan | | VPAGAFNK | | 0 | 802.4337 | 2 | VPAGAFNK | | light | 2+ | 402.2241 | 802.4337 | 5 | 4.9504 | |
| G3N5E0 | Keratocan | | SLMQLNLAHNVLK | | 0 | 1479.8232 | 3 | SLMQLNLAHNVLK | | light | 2+ | 740.9189 | 1479.8232 | 5 | 22.2239 | |
| G3N5E0 | Keratocan | | LNYNQLSDK | | 0 | 1093.5404 | 1 | LNYNQLSDK | | light | 2+ | 547.7775 | 1093.5404 | 5 | 12.3737 | |
| G3N5E0 | Keratocan | | SLQADPSDLSLVPSLR | | 0 | 1696.8996 | 4 | SLQADPSDLSLVPSLR | | light | 2+ | 849.4571 | 1696.8996 | 5 | 27.7593 | |
| G3N5E5 | Fibromodulin | | GLTAMPSIPSR | | 0 | 1128.5961 | 1 | GLTAMPSIPSR | | light | 2+ | 565.3053 | 1128.5961 | 5 | 13.2676 | |
| G3N5E5 | Fibromodulin | | YVYLQNNAIK | | 0 | 1224.6503 | 2 | YVYLQNNAIK | | light | 2+ | 613.3324 | 1224.6503 | 5 | 15.7170 | |
| G3N5E5 | Fibromodulin | | SLTLLEISGNK | | 0 | 1173.6605 | 3 | SLTLLEISGNK | | light | 2+ | 587.8375 | 1173.6605 | 5 | 14.4167 | |
| G3N5F0 | Ubiquitin-conjugating enzyme E2 L3 | | IELIFPAEYPFKPPK | | 0 | 1787.9862 | 2 | IELIFPAEYPFKPPK | | light | 3+ | 597.0027 | 1787.9862 | 5 | 12.3051 | |
| G3N5F0 | Ubiquitin-conjugating enzyme E2 L3 | | IYHPNIDEK | | 0 | 1127.5611 | 1 | IYHPNIDEK | | light | 2+ | 564.7878 | 1127.5611 | 5 | 13.2412 | |
| G3N5F0 | Ubiquitin-conjugating enzyme E2 L3 | | ADLAEEYSK | | 0 | 1024.4713 | 3 | ADLAEEYSK | | light | 2+ | 513.2429 | 1024.4713 | 5 | 10.6124 | |
| G3N5F0 | Ubiquitin-conjugating enzyme E2 L3 | | NAEEFTK | | 0 | 837.3868 | 4 | NAEEFTK | | light | 2+ | 419.7007 | 837.3868 | 5 | 5.8417 | |