In-Gel Digest to identify Aspergillus fumigatus protein antigens in severe equine asthma (SEA)
Jentsch MC, Lübke S, Schrödl W, Volke D, Krizsan A, Hoffmann R, Kaiser-Thom S, Gerber V, Marti E, Wagner B, Schnabel CL. Immunoproteomics enable broad identification of new
Aspergillus fumigatus antigens in severe equine asthma. Front Immunol. 2024 Feb 29;15:1347164. doi: 10.3389/fimmu.2024.1347164. PMID: 38487534; PMCID: PMC10937411.
- Organism: Aspergillus fumigatus
- Instrument: SYNAPT G2-Si
- SpikeIn:
No
- Keywords:
recurrent airway obstruction, COPD, proteomics, immunoglobulin isotype, serum, antibody, immunoblot
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Lab head: Ralf Hoffmann
Submitter: Daniela Volke
Aspergillus fumigatus (Asp f) has been described as a major extrinsic stimulus of SEA and is a common mold species in hay. Aiming to identify disease-relevant antigens, we analyzed Asp f as a source, in an immuno-proteomics approach on two-dimensional immunoblots. For 21 of 289 spots serum Ig binding was different between asthmatic and healthy horses’ sera. Proteins were in-gel digested and tryptic peptides extracted from the 21 spots of interest, analyzed by liquid chromatography-mass spectrometry and eight identified and prioritized candidate antigens were expressed as recombinant proteins.
Peptides obtained after tryptic in-gel digest were analyzed with a nanoACQUITY Ultra Performance LC™ coupled to a Q-TOF SYNAPT G2-Si instrument. For measurments a high-definition data-dependent acquisition approach (HD-DDA) for top 6 ions was used. Followed by data analysis with Mascot Distiller (Version 2.8.1.0) and Mascot search engine (Version 2.7.0).
66 in-gel digest samples from 2D-PAGE spots for identification of protein antigens;
19 in-gel digest samples from SDS-PAGE bands to verify protein expression
Created on 10/2/23, 8:46 PM