U of Leipzig AG Bioanalytics - Asp f in SEA

In-Gel Digest to identify Aspergillus fumigatus protein antigens in severe equine asthma (SEA)
Data License: CC BY 4.0 | ProteomeXchange: PXD045869 | doi: https://doi.org/10.6069/wy5m-fb36
  • Organism: Aspergillus fumigatus
  • Instrument: SYNAPT G2-Si
  • SpikeIn: No
  • Keywords: recurrent airway obstruction, COPD, proteomics, immunoglobulin isotype, serum, antibody, immunoblot
  • Lab head: Ralf Hoffmann Submitter: Daniela Volke
Abstract
Aspergillus fumigatus (Asp f) has been described as a major extrinsic stimulus of SEA and is a common mold species in hay. Aiming to identify disease-relevant antigens, we analyzed Asp f as a source, in an immuno-proteomics approach on two-dimensional immunoblots. For 21 of 289 spots serum Ig binding was different between asthmatic and healthy horses’ sera. Proteins were in-gel digested and tryptic peptides extracted from the 21 spots of interest, analyzed by liquid chromatography-mass spectrometry and eight identified and prioritized candidate antigens were expressed as recombinant proteins.
Experiment Description
Peptides obtained after tryptic in-gel digest were analyzed with a nanoACQUITY Ultra Performance LC™ coupled to a Q-TOF SYNAPT G2-Si instrument. For measurments a high-definition data-dependent acquisition approach (HD-DDA) for top 6 ions was used. Followed by data analysis with Mascot Distiller (Version 2.8.1.0) and Mascot search engine (Version 2.7.0).
Sample Description
66 in-gel digest samples from 2D-PAGE spots for identification of protein antigens; 19 in-gel digest samples from SDS-PAGE bands to verify protein expression
Created on 10/2/23, 8:46 PM
Clustergrammer Heatmap
 
Download
IdentExpression_2023-09-25_14-39-47.sky.zip2023-10-02 20:45:1381581941,16419
2DGel_II_2023-09-25_14-37-39.sky.zip2023-10-02 20:45:13897408805,28034
2DGel_I_2023-09-25_14-36-13.sky.zip2023-10-02 20:45:13252142321,39232