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Extended_pep_immunoMRM_undigested_IP_capture_2022-11-23_11-03-17.sky.zip

Paulovich - Extended_peptide_MRM_digestion_QC

Document Summary

 
Extended_pep_immunoMRM_undigested_IP_capture_2022-11-23_11-03-17.sky.zip
11 MB 
  1 version
 
115 proteins, 216 peptides, 216 precursors, 868 transitions  -  24 replicates, 216 calibration curves  -  Skyline-daily (64-bit) 22.2.1.306 (34055c02f)

Peptide Calibration Curves

 
AALQSRQQAAPDADLSQEPHLF1.8489E5-9.6350E4120.0000E00.91027 FANCA_DDR1_Undigested
ADVTPADFSEWSK0.0000E00.0000E000.0000E0 Unable to calculate curve, since there are no data points availableBiognosys
AFGIPIRVYT[+79.966331]HEVVTLWYRSPEV2.6902E21.8957E3120.0000E00.70994 CDK1_DDR2_Undigested
AFGIPIRVYTHEVVTLWYRSPEV1.2411E21.0232E4120.0000E00.49168 CDK1_DDR2_Undigested
AGGPTT[+79.966331]PLS[+79.966331]PTR2.1482E21.2451E4100.0000E00.53206 sp|P20700|LMNB1_HUMAN
AGGPTT[+79.966331]PLSPTR2.8200E12.7428E3120.0000E00.54346 sp|P20700|LMNB1_HUMAN
AGGPTTPLS[+79.966331]PTR1.3633E15.5296E3120.0000E00.16116 sp|P20700|LMNB1_HUMAN
AGGPTTPLSPTR-1.0823E31.9926E6110.0000E00.16977 sp|P20700|LMNB1_HUMAN
AIS[+79.966331]ETEENSDELSGER-2.5545E02.1921E3120.0000E00.11631 sp|Q00987|MDM2_HUMAN
AISETEENSDELSGER2.3887E12.7099E5110.0000E00.00462 sp|Q00987|MDM2_HUMAN
AKNSDLLTS[+79.966331]PDVGLLKLASPEL-9.8436E14.9986E4120.0000E00.22856 JUN_DDR1_Undigested
ALPNNTSSS[+79.966331]PQPK5.1684E15.4175E4110.0000E00.31626 sp|P04637|P53_HUMAN
ANKLAAPSVSHVS[+79.966331]PRKNPSVVIK8.8147E01.9212E3120.0000E00.19474 ATRIP_DDR1_Undigested
APPHTRAPS[+79.966331]PLGPTRDPVATF1.5072E4-6.6937E4120.0000E00.86214 FAAP100_DDR1_Undigested
APPHTRAPSPLGPTRDPVATF1.1949E33.9381E4120.0000E00.91640 FAAP100_DDR1_Undigested
APS[+79.966331]PLGPTR4.6448E04.0792E5120.0000E00.00011 sp|Q0VG06|FAAP100_HUMAN
APSPLGPTR-1.4376E25.5211E6120.0000E00.00033 sp|Q0VG06|FAAP100_HUMAN
AQPFGFIDS[+79.966331]DTDAEEER9.3169E21.7335E6120.0000E00.17796 sp|Q14676|MDC1_HUMAN
AQPFGFIDSDTDAEEER-1.2548E25.3715E5120.0000E00.02834 sp|Q14676|MDC1_HUMAN
AS[+79.966331]QLVGIEK1.0612E36.2005E6120.0000E00.00957 sp|Q9NPD8|UBE2T_HUMAN
ASQGLLSSIENSESDSSEAK3.6338E22.3190E5120.0000E00.28220 sp|Q5UIP0|RIF1_HUMAN
ASQLVGIEK9.0181E21.6799E7120.0000E00.00096 sp|Q9NPD8|UBE2T_HUMAN
ASSIIDELFQDR6.9979E01.5891E3120.0000E00.17220 sp|P10909|CLU_HUMAN
ATPELGSSENSASS[+79.966331]PPR6.3300E21.4506E6120.0000E00.05967 sp|Q9BX63|FANCJ_HUMAN
ATPELGSSENSASSPPR1.6232E-18.5123E2120.0000E00.00200 sp|Q9BX63|FANCJ_HUMAN
ATQAS[+79.966331]QEY5.8336E03.3574E3120.0000E00.10628 sp|P16104|H2AX_HUMAN
AVFPSIVGRPR-8.6166E24.2359E5120.0000E00.13339 sp|P68133|ACTS_HUMAN
AWRKDHPFGFVAVPTKNPDGTM1.4304E13.1448E3120.0000E00.60836 UBE2I_DDR1_Undigested
AYT[+79.966331]HQVVTR1.1243E29.6001E4110.0000E00.63233 sp|P50613|CDK7_HUMAN
DGLDAASYYAPVR0.0000E00.0000E000.0000E0 Unable to calculate curve, since there are no data points availableBiognosys
DHPFGFVAVPTK5.5031E11.5011E6120.0000E00.00063 sp|P63279|UBE2I_HUMAN
DINTFLGT[+79.966331]PVQK-1.8340E32.3038E6110.0000E00.71896 sp|P46013|MKI67_HUMAN
DINTFLGTPVQK-1.1864E36.3231E5110.0000E00.79869 sp|P46013|MKI67_HUMAN
DIQHWESLKPEER1.7964E28.0791E5120.0000E00.02888 sp|P31350|RRM2_HUMAN
DKRPLS[+79.966331]GPDVGTPQPAGLASGAKLAAG3.9766E38.1033E4120.0000E00.94775 PAK4_DDR2_Undigested
DKRPLSGPDVGTPQPAGLASGAKLAAG1.9075E02.6442E3120.0000E00.03729 PAK4_DDR2_Undigested
DLNSKSASDLSEDLFKVHDFDVK-8.1545E-11.3002E3120.0000E00.01166 RTF1_DDR2_Undigested
DLSHIGDAVVISC[+57.021464]AK-2.2445E37.2926E6120.0000E00.05129 sp|P12004|PCNA_HUMAN
DLSHIGDAVVISC[+57.021464]AK[+114.042927]DGVK-1.7119E33.4162E6120.0000E00.08031 sp|P12004|PCNA_HUMAN
DLVLPTQALPAS[+79.966331]PALK4.0188E01.7200E3120.0000E00.27007 sp|Q15554|TERF2_HUMAN
DLVLPTQALPASPALK4.0997E01.3365E3120.0000E00.26363 sp|Q15554|TERF2_HUMAN
DLVSFPLSPAVR-2.5529E34.7472E6120.0000E00.21634 sp|O43502|RAD51C_HUMAN
DSGS[+79.966331]QEVLSELR-5.7627E01.5602E6110.0000E00.00002 sp|Q9BVJ6|UT14A_HUMAN
DSGSQEVLSELR1.6857E21.6460E6110.0000E00.01071 sp|Q9BVJ6|UT14A_HUMAN
DSLRMAIMVQS[+79.966331]PMFDGKVPHWYH1.4515E2-1.9894E3110.0000E00.88705 PARP1_DDR2_Undigested
EELGFRPEYS[+79.966331]ASQLK-3.8299E24.7471E6120.0000E00.00375 sp|P09874|PARP1_HUMAN
EELGFRPEYSASQLK-9.5039E23.1072E7120.0000E00.00050 sp|P09874|PARP1_HUMAN
EIESEIDS[+79.966331]EEELINK-2.9371E09.1445E3110.0000E00.00934 sp|Q14566|MCM6_HUMAN
EIESEIDSEEELINK6.0347E01.3137E5110.0000E00.00211 sp|Q14566|MCM6_HUMAN
EIIINAVRIEQEFLTEALPVKLIGMN-3.8496E22.2013E5120.0000E00.11981 RRM2_DDR1_Undigested
ELDKSADFS[+79.966331]QSTSIGIKNNIC[+57.021464]7.1439E33.7922E590.0000E00.85635 FANCI_DDR1_Undigested
EVDLSKDIQHWESLKPEERYFISHV1.2036E11.6049E3120.0000E00.55040 RRM2_DDR1_Undigested
EYVNVS[+79.966331]QELHPGAAK4.1858E31.1197E7110.0000E00.28320 sp|O43561|LAT_HUMAN
FEMQRDLVSFPLSPAVRVK8.4803E3-8.5534E2120.0000E00.83486 RAD51C_DDR1_Undigested
FGHSKILGETS[+79.966331]LM[+15.994915]RTLC[+57.021464]G3.9443E12.3202E4120.0000E00.04028 CHEK2_DDR2_Undigested
FGHSKILGETS[+79.966331]LMRTLC[+57.021464]G9.0268E-13.7590E3120.0000E00.00771 CHEK2_DDR2_Undigested
FPSSPLRIPGGNIYIS[+79.966331]PLKSPYK2.1087E4-1.2826E5120.0000E00.93899 RB1_DDR1_Undigested
FPSSPLRIPGGNIYISPLKSPYK1.8351E28.7877E3120.0000E00.83926 RB1_DDR1_Undigested
FQSMPVRLLGHS[+79.966331]PVLRNITN2.6949E13.5350E3120.0000E00.57764 CDC25B_DDR2_Undigested
FVQETELS[+79.966331]QR1.4277E25.7485E5110.0000E00.07947 sp|Q6IBW4|CNDH2_HUMAN
FVQETELSQR-8.8560E05.6015E3120.0000E00.20312 sp|Q6IBW4|CNDH2_HUMAN
GAGSSEPVTGLDAK0.0000E00.0000E000.0000E0 Unable to calculate curve, since there are no data points availableBiognosys
GAKRPRVTSGGVSESPSGFSKHIQS2.6898E-13.9373E2120.0000E00.03821 CHEK1_DDR2_Undigested
GALQNIIPASTGAAK-4.3055E12.3839E450.0000E00.19567 sp|P04406|G3P_HUMAN
GISAFPESDNLFK-1.2706E42.1905E7120.0000E00.48586 sp|O00762|UBE2C_HUMAN
GSLQNRNYPS[+79.966331]QEELIKVVDVEE-1.7485E11.1916E4120.0000E00.06961 BRCA1_DDR1_Undigested
GSLQNRNYPSQEELIKVVDVEE-9.1008E14.3782E4120.0000E00.29687 BRCA1_DDR1_Undigested
GSQETKDSGSQEVLSELRVLSQK1.5463E32.8911E2120.0000E00.97481 UTP14A_DDR2_Undigested
GTFIIDPAAVIR0.0000E00.0000E000.0000E0 Unable to calculate curve, since there are no data points availableBiognosys
GTFIIDPGGVIR0.0000E00.0000E000.0000E0 Unable to calculate curve, since there are no data points availableBiognosys
GVELC[+57.021464]FPENET[+79.966331]PPEGK1.5871E08.3019E2120.0000E00.08081 sp|Q13535|ATR_HUMAN
GVELCFPENETPPEGK2.3895E11.7109E3120.0000E00.38527 sp|Q13535|ATR_HUMAN
GVLT[+79.966331]QTLEMR4.0817E1-2.5233E2120.0000E00.87111 sp|Q92547|TOPB1_HUMAN
GVLTQTLEMR1.1535E17.2599E2120.0000E00.75124 sp|Q92547|TOPB1_HUMAN
HLERAQPFGFIDS[+79.966331]DTDAEEERIPAT-3.1314E-11.4818E4120.0000E00.00033 MDC1_DDR1_Undigested
HLERAQPFGFIDSDTDAEEERIPAT7.1110E3-7.7752E4120.0000E00.84582 MDC1_DDR1_Undigested
HLVIRKQLSSTVFKYK3.2039E25.7014E3120.0000E00.86312 FANCD2_DDR1_Undigested
IDEDGENT[+79.966331]QIEDTEPMS[+79.966331]PVLNSK1.0401E2-2.0175E2120.0000E00.49464 sp|Q12888|TP53BP1_HUMAN
IDEDGENT[+79.966331]QIEDTEPMSPVLNSK-3.3961E-14.7581E3120.0000E00.00034 sp|Q12888|TP53BP1_HUMAN
IDEDGENTQIEDTEPMS[+79.966331]PVLNSK1.0179E19.2071E2120.0000E00.58636 sp|Q12888|TP53BP1_HUMAN
IDEDGENTQIEDTEPMSPVLNSK-5.0862E33.6349E6110.0000E00.64297 sp|Q12888|TP53BP1_HUMAN
IDIDPEETVK-7.3292E32.2009E7120.0000E00.10041 sp|P54727|RAD23B_HUMAN
IEQEFLTEALPVK-2.4495E34.3999E6120.0000E00.17201 sp|P31350|RRM2_HUMAN
IIHGSES[+79.966331]MDSGISLDNSYK-7.1593E12.3088E5110.0000E00.06183 sp|P42574|CASP3_HUMAN
ILGETS[+79.966331]LM[+15.994915]R1.8431E21.2411E6110.0000E00.05466 sp|O96017|CHEK2_HUMAN
ILNDDTALK-2.1252E32.4280E7120.0000E00.00480 sp|P54727|RAD23B_HUMAN
IMS[+79.966331]QSQVSK4.0637E15.6383E4110.0000E00.34403 sp|P49959|MRE11_HUMAN
IMSQSQVSK2.6826E22.3641E5110.0000E00.51322 sp|P49959|MRE11_HUMAN
IPGGNIYIS[+79.966331]PLK-1.4951E32.8732E6120.0000E00.50675 sp|P06400|RB1_HUMAN
IPGGNIYISPLK-8.0960E23.4793E6120.0000E00.03641 sp|P06400|RB1_HUMAN
IPKATPELGSSENSASSPPRFKTEK6.0502E03.3968E3120.0000E00.20635 FANCJ_DDR1_Undigested
IPNYQLS[+79.966331]PTK5.0041E24.2534E6120.0000E00.00992 sp|O60934|NBN_HUMAN
IPNYQLSPTK1.0391E34.2934E6120.0000E00.02410 sp|O60934|NBN_HUMAN
IRSGTLS[+79.966331]PEIFEKSTIDSNENR1.6300E32.9124E4120.0000E00.98589 REV3L_DDR1_Undigested
IRSGTLSPEIFEKSTIDSNENR5.9180E15.4602E3120.0000E00.76472 REV3L_DDR1_Undigested
ISVYYNEATGGK-9.2881E16.4319E4110.0000E00.15852 sp|P07437|TUBB_HUMAN
ITEINKLTAEAIQT[+79.966331]PLKSAK1.9717E13.1170E3120.0000E00.46129 CDCA8_DDR2_Undigested
K[+114.042927]QLSSTVFK-1.7761E23.8957E5120.0000E00.04070 sp|Q9BXW9|FANCD2_HUMAN
KQLSSTVFK-1.6373E25.8453E5120.0000E00.01822 sp|Q9BXW9|FANCD2_HUMAN
LAAPSVSHVS[+79.966331]PR2.7342E28.0601E5120.0000E00.03209 sp|Q8WXE1|ATRIP_HUMAN