Publications

2019-11-21

Peer reviewed manuscripts

  • Panorama: A Targeted Proteomics Knowledge Base. Sharma V, Eckels J, Taylor GK, Shulman NJ, Stergachis AB, Joyner SA, Yan P, Whiteaker JR, Halusa GN, Schilling B, Gibson BW, Colangelo CM, Paulovich AG, Carr SA, Jaffe JD, MacCoss MJ, MacLean B. Journal of Proteome Research. 2014 [abstract] [pdf]
  • Panorama Public: A public repository for quantitative data sets processed in Skyline. Vagisha Sharma, Josh Eckels, Birgit Schilling, Christina Ludwig, Jacob D. Jaffe, Michael J. MacCoss and Brendan MacLean. Molecular and Cellular Proteomics. 2018 [abstract] [pdf]
  • An Automated Pipeline to Monitor System Performance in Liquid Chromatography Tandem Mass Spectrometry Proteomic Experiments. Michael S. Bereman, Joshua Beri, Vagisha Sharma, Cory Nathe, Josh Eckels, Brendan MacLean, Michael J. MacCoss. Journal of Proteome Research. 2016 [abstract] [pdf]

Posters

  • Panorama Public: ProteomeXchange and Cloud Storage Integration. Sharma V, Connolly B, Eckels J, Bradlee D, Omaiye A, MacCoss MJ, MacLean B. ASMS Poster. 2019 [pdf]
  • Customizable quality control metrics and notifications with Panorama, AutoQC, and Skyline. Eckels J, Sharma V, Pradere M, Juneja A, Omaiye A, Nathe C, Jewargikar S, MacCoss MJ, MacLean B. ASMS Poster. 2019 [pdf]
  • Audit Logs to enforce document integrity in Skyline and Panorama . Rhode T, Chupalov R, Shulman N, Sharma V, Eckels J, Pratt BS, MacCoss MJ, MacLean B. ASMS Poster. 2019 [pdf]
  • Managing Small Molecule Targeted Mass Spec Assays using Skyline and Panorama. Eckels J, Sharma V, Pratt B, Dunkley T, Wildsmith K, Anania V, Li Q, Nathe C, Patel B, MacCoss MJ, MacLean B. ASMS Poster. 2016 [pdf]
  • Performing quality control on targeted proteomics assays using Skyline and Panorama. Eckels J, Sharma V, Boss Y, Shi H, Dunkley T, Wildsmith K, Nathe C, Robinson A, Johnson R, Jaffe JD, MacCoss MJ, MacLean B. ASMS Poster. 2015 [pdf]
  • Panorama Public: A public repository for Skyline documents. Sharma V, Eckels J, Schilling B, Jaffe JD, MacCoss MJ, Brendan MacLean. ASMS Poster. 2015 [pdf]
  • Sharing targeted proteomics assays using Skyline and Panorama. Eckels J, Sharma V, MacLean B, Taylor GK, Shulman NJ, Stergachis AB, Joyner SA, Jaffe JD, MacCoss MJ. ASMS Poster. 2013 [pdf]
  • Panorama: A Private Repository of Targeted Proteomics Assays for Skyline. Sharma V, MacLean B, Eckels J, Stergachis AB, Jaffe JD, MacCoss MJ. ASMS Poster. 2012 [pdf]