Welcome to the Panorama repository for the manuscript:

Improving Precursor Selectivity in Data Independent Acquisition Using Overlapping Windows

Dario Amodei*1, Jarrett Egertson*2, Brendan MacLean2, Richard Johnson2, Gennifer E Merrihew2, Austin Keller2, Don Marsh2, Olga Vitek3, Parag Mallick&1, Michael J. MacCoss&2

1. Department of Radiology, Stanford University, 3155 Porter Drive, Palo Alto, CA 

2. Department of Genome Sciences, University of Washington, 3720 15th Ave. NE, Seattle, WA

3. College of Computer and Information Science, Northeastern University, 440 Huntington Ave, Boston, MA

Please find the manuscript abstract and experiment description below.

To access raw data and Skyline files for the spike-in and rapamycin-treatment experiments detailed in the manuscript, click the applicable folder in the Projects section below.

A tutorial on generating an overlapping window isolation list using Skyline can be found here.

A tutorial on demultiplexing overlap data using MSConvert can be found here.