The following two Skyline documents accompany our publication 

An optimized chromatographic strategy for multiplexing in parallel reaction monitoring mass spectrometry: Insights from quantitation of activated kinases

Urisman A, Levin RS, Gordan JD, Webber JT, Hernandez H, Ishihama Y, Shokat KM, Burlingame AL.

Mol Cell Proteomics. 2016 Dec 11. pii: mcp.M116.058172. [Epub ahead of print] PubMed PMID: 27940637.

https://www.ncbi.nlm.nih.gov/pubmed/27940637