Table 1 - P. putida KT2440_2018-07-20_13-39-56.sky.zip

JBEI - Workflow
Name: Table 1 - P. putida KT2440_2018-07-20_13-39-56.sky.zip , from file P. putida KT2440_2018-07-20_13-39-56.sky.zip (12 MB)   1 version
 
549 proteins, 1,498 peptides, 1,498 precursors, 4,494 transitions  -  1 replicate  -  Skyline (64-bit) 4.1.0.18169
Protein / LabelDescriptionProtein Annotations 
sp|Q88MG4|ACCA_PSEPK Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha OS=Pseudomonas putida (strain KT2440) GN=accA PE=3 SV=1
PeptidePeptide AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor AnnotationsLabelPrecursor Neutral MassQ1 m/zQ1 ZFragmentQ3 m/zQ3 Z
LVGNDNSLNISDEIAR01728.86421LVGNDNSLNISDEIARlight1728.8642865.43942+M865.4394 
LVGNDNSLNISDEIAR01728.86421LVGNDNSLNISDEIARlight1728.8642865.43942+M+1865.9408 
LVGNDNSLNISDEIAR01728.86421LVGNDNSLNISDEIARlight1728.8642865.43942+M+2866.4421 
FDNDALLAR01033.51932FDNDALLARlight1033.5193517.76692+M517.7669 
FDNDALLAR01033.51932FDNDALLARlight1033.5193517.76692+M+1518.2683 
FDNDALLAR01033.51932FDNDALLARlight1033.5193517.76692+M+2518.7696 
sp|Q88LD9|ACCD_PSEPK Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Pseudomonas putida (strain KT2440) GN=accD PE=3 SV=1
PeptidePeptide AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor AnnotationsLabelPrecursor Neutral MassQ1 m/zQ1 ZFragmentQ3 m/zQ3 Z
IDIFLDAEGR01147.58732IDIFLDAEGRlight1147.5873574.80092+M574.8009 
IDIFLDAEGR01147.58732IDIFLDAEGRlight1147.5873574.80092+M+1575.3024 
IDIFLDAEGR01147.58732IDIFLDAEGRlight1147.5873574.80092+M+2575.8038 
AELGADLEPVDR01283.63571AELGADLEPVDRlight1283.6357642.82512+M642.8251 
AELGADLEPVDR01283.63571AELGADLEPVDRlight1283.6357642.82512+M+1643.3266 
AELGADLEPVDR01283.63571AELGADLEPVDRlight1283.6357642.82512+M+2643.8279 
AANYALENR01020.49893AANYALENRlight1020.4989511.25672+M511.2567 
AANYALENR01020.49893AANYALENRlight1020.4989511.25672+M+1511.7581 
AANYALENR01020.49893AANYALENRlight1020.4989511.25672+M+2512.2594 
sp|Q88LL5|ACP_PSEPK Acyl carrier protein OS=Pseudomonas putida (strain KT2440) GN=acpP PE=3 SV=1
PeptidePeptide AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor AnnotationsLabelPrecursor Neutral MassQ1 m/zQ1 ZFragmentQ3 m/zQ3 Z
IVAEQLGVK0955.57022IVAEQLGVKlight955.5702478.79242+M478.7924 
IVAEQLGVK0955.57022IVAEQLGVKlight955.5702478.79242+M+1479.2939 
IVAEQLGVK0955.57022IVAEQLGVKlight955.5702478.79242+M+2479.7952 
IVAEQLGVKEEEVTVEK11899.02013IVAEQLGVKEEEVTVEKlight1899.0201634.01403+M634.0140 
IVAEQLGVKEEEVTVEK11899.02013IVAEQLGVKEEEVTVEKlight1899.0201634.01403+M+1634.3483 
IVAEQLGVKEEEVTVEK11899.02013IVAEQLGVKEEEVTVEKlight1899.0201634.01403+M+2634.6825 
EEEVTVEK0961.46044EEEVTVEKlight961.4604481.73752+M481.7375 
EEEVTVEK0961.46044EEEVTVEKlight961.4604481.73752+M+1482.2390 
EEEVTVEK0961.46044EEEVTVEKlight961.4604481.73752+M+2482.7403 
ITTVQAAIDYVK01320.72891ITTVQAAIDYVKlight1320.7289661.37172+M661.3717 
ITTVQAAIDYVK01320.72891ITTVQAAIDYVKlight1320.7289661.37172+M+1661.8732 
ITTVQAAIDYVK01320.72891ITTVQAAIDYVKlight1320.7289661.37172+M+2662.3746 
sp|Q88EH6|ACSA1_PSEPK Acetyl-coenzyme A synthetase 1 OS=Pseudomonas putida (strain KT2440) GN=acsA1 PE=3 SV=1
PeptidePeptide AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor AnnotationsLabelPrecursor Neutral MassQ1 m/zQ1 ZFragmentQ3 m/zQ3 Z
IGAIHSVVFGGFSPEALAGR01984.05302IGAIHSVVFGGFSPEALAGRlight1984.0530662.35833+M662.3583 
IGAIHSVVFGGFSPEALAGR01984.05302IGAIHSVVFGGFSPEALAGRlight1984.0530662.35833+M+1662.6926 
IGAIHSVVFGGFSPEALAGR01984.05302IGAIHSVVFGGFSPEALAGRlight1984.0530662.35833+M+2663.0268 
VVITADEGVR01057.57683VVITADEGVRlight1057.5768529.79572+M529.7957 
VVITADEGVR01057.57683VVITADEGVRlight1057.5768529.79572+M+1530.2971 
VVITADEGVR01057.57683VVITADEGVRlight1057.5768529.79572+M+2530.7984 
ANVDLALTNPETSSVQK01785.91094ANVDLALTNPETSSVQKlight1785.9109893.96272+M893.9627 
ANVDLALTNPETSSVQK01785.91094ANVDLALTNPETSSVQKlight1785.9109893.96272+M+1894.4642 
ANVDLALTNPETSSVQK01785.91094ANVDLALTNPETSSVQKlight1785.9109893.96272+M+2894.9655 
VDDVLNVSGHR01209.61021VDDVLNVSGHRlight1209.6102404.21073+M404.2107 
VDDVLNVSGHR01209.61021VDDVLNVSGHRlight1209.6102404.21073+M+1404.5449 
VDDVLNVSGHR01209.61021VDDVLNVSGHRlight1209.6102404.21073+M+2404.8791 
VAEAAVVGVPHDIK01403.77735VAEAAVVGVPHDIKlight1403.7773468.93303+M468.9330 
VAEAAVVGVPHDIK01403.77735VAEAAVVGVPHDIKlight1403.7773468.93303+M+1469.2673 
VAEAAVVGVPHDIK01403.77735VAEAAVVGVPHDIKlight1403.7773468.93303+M+2469.6016 
KEIGPIASPDVIQWAPGLPK12115.17286KEIGPIASPDVIQWAPGLPKlight2115.1728706.06493+M706.0649 
KEIGPIASPDVIQWAPGLPK12115.17286KEIGPIASPDVIQWAPGLPKlight2115.1728706.06493+M+1706.3992 
KEIGPIASPDVIQWAPGLPK12115.17286KEIGPIASPDVIQWAPGLPKlight2115.1728706.06493+M+2706.7335 
sp|Q88DW6|ACSA2_PSEPK Acetyl-coenzyme A synthetase 2 OS=Pseudomonas putida (strain KT2440) GN=acsA2 PE=3 SV=1
PeptidePeptide AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor AnnotationsLabelPrecursor Neutral MassQ1 m/zQ1 ZFragmentQ3 m/zQ3 Z
TVITADEGVR01059.55602TVITADEGVRlight1059.5560530.78532+M530.7853 
TVITADEGVR01059.55602TVITADEGVRlight1059.5560530.78532+M+1531.2867 
TVITADEGVR01059.55602TVITADEGVRlight1059.5560530.78532+M+2531.7880 
TGGDVAWTEGR01147.52583TGGDVAWTEGRlight1147.5258574.77022+M574.7702 
TGGDVAWTEGR01147.52583TGGDVAWTEGRlight1147.5258574.77022+M+1575.2716 
TGGDVAWTEGR01147.52583TGGDVAWTEGRlight1147.5258574.77022+M+2575.7729 
LIEGPGAGVLAIK01236.74421LIEGPGAGVLAIKlight1236.7442619.37942+M619.3794 
LIEGPGAGVLAIK01236.74421LIEGPGAGVLAIKlight1236.7442619.37942+M+1619.8808 
LIEGPGAGVLAIK01236.74421LIEGPGAGVLAIKlight1236.7442619.37942+M+2620.3822 
IDDVINVSGHR01223.62584IDDVINVSGHRlight1223.6258408.88263+M408.8826 
IDDVINVSGHR01223.62584IDDVINVSGHRlight1223.6258408.88263+M+1409.2168 
IDDVINVSGHR01223.62584IDDVINVSGHRlight1223.6258408.88263+M+2409.5510 
sp|Q88EI9|AK_PSEPK Aspartate kinase OS=Pseudomonas putida (strain KT2440) GN=PP_4473 PE=1 SV=1
PeptidePeptide AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor AnnotationsLabelPrecursor Neutral MassQ1 m/zQ1 ZFragmentQ3 m/zQ3 Z
FGGTSVGSIER01108.55132FGGTSVGSIERlight1108.5513555.28292+M555.2829 
FGGTSVGSIER01108.55132FGGTSVGSIERlight1108.5513555.28292+M+1555.7844 
FGGTSVGSIER01108.55132FGGTSVGSIERlight1108.5513555.28292+M+2556.2857 
GVPAVSYTGNQVR01346.69435GVPAVSYTGNQVRlight1346.6943674.35442+M674.3544 
GVPAVSYTGNQVR01346.69435GVPAVSYTGNQVRlight1346.6943674.35442+M+1674.8558 
GVPAVSYTGNQVR01346.69435GVPAVSYTGNQVRlight1346.6943674.35442+M+2675.3571 
ILQIDDQK0971.52886ILQIDDQKlight971.5288486.77172+M486.7717 
ILQIDDQK0971.52886ILQIDDQKlight971.5288486.77172+M+1487.2731 
ILQIDDQK0971.52886ILQIDDQKlight971.5288486.77172+M+2487.7744 
GGSDTTGVALAAALK01330.70923GGSDTTGVALAAALKlight1330.7092666.36192+M666.3619 
GGSDTTGVALAAALK01330.70923GGSDTTGVALAAALKlight1330.7092666.36192+M+1666.8633 
GGSDTTGVALAAALK01330.70923GGSDTTGVALAAALKlight1330.7092666.36192+M+2667.3647 
VSVVLEEK0901.51204VSVVLEEKlight901.5120451.76332+M451.7633 
VSVVLEEK0901.51204VSVVLEEKlight901.5120451.76332+M+1452.2648 
VSVVLEEK0901.51204VSVVLEEKlight901.5120451.76332+M+2452.7661 
ALHTAFDLDAPAR01396.70991ALHTAFDLDAPARlight1396.7099466.57723+M466.5772 
ALHTAFDLDAPAR01396.70991ALHTAFDLDAPARlight1396.7099466.57723+M+1466.9115 
ALHTAFDLDAPAR01396.70991ALHTAFDLDAPARlight1396.7099466.57723+M+2467.2458 
sp|Q88P73|AMPA_PSEPK Probable cytosol aminopeptidase OS=Pseudomonas putida (strain KT2440) GN=pepA PE=3 SV=1
PeptidePeptide AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor AnnotationsLabelPrecursor Neutral MassQ1 m/zQ1 ZFragmentQ3 m/zQ3 Z
TATLVLPVGENR01268.70894TATLVLPVGENRlight1268.7089635.36172+M635.3617 
TATLVLPVGENR01268.70894TATLVLPVGENRlight1268.7089635.36172+M+1635.8631 
TATLVLPVGENR01268.70894TATLVLPVGENRlight1268.7089635.36172+M+2636.3645 
VLLVGSGK0771.48542VLLVGSGKlight771.4854386.75002+M386.7500 
VLLVGSGK0771.48542VLLVGSGKlight771.4854386.75002+M+1387.2515 
VLLVGSGK0771.48542VLLVGSGKlight771.4854386.75002+M+2387.7528 
LVASVAGVLK0955.60661LVASVAGVLKlight955.6066478.81062+M478.8106 
LVASVAGVLK0955.60661LVASVAGVLKlight955.6066478.81062+M+1479.3121 
LVASVAGVLK0955.60661LVASVAGVLKlight955.6066478.81062+M+2479.8134 
LLAETLLDGEYVFDR01752.89343LLAETLLDGEYVFDRlight1752.8934877.45402+M877.4540 
LLAETLLDGEYVFDR01752.89343LLAETLLDGEYVFDRlight1752.8934877.45402+M+1877.9555 
LLAETLLDGEYVFDR01752.89343LLAETLLDGEYVFDRlight1752.8934877.45402+M+2878.4569 
sp|Q88P52|ARCA_PSEPK Arginine deiminase OS=Pseudomonas putida (strain KT2440) GN=arcA PE=3 SV=1
PeptidePeptide AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor AnnotationsLabelPrecursor Neutral MassQ1 m/zQ1 ZFragmentQ3 m/zQ3 Z
ITPDTVGVGLTNEVR01569.83623ITPDTVGVGLTNEVRlight1569.8362785.92542+M785.9254 
ITPDTVGVGLTNEVR01569.83623ITPDTVGVGLTNEVRlight1569.8362785.92542+M+1786.4268 
ITPDTVGVGLTNEVR01569.83623ITPDTVGVGLTNEVRlight1569.8362785.92542+M+2786.9282 
HLAEFLIGGVAGQDLPQSEGADVVK02549.31264HLAEFLIGGVAGQDLPQSEGADVVKlight2549.3126850.77813+M850.7781 
HLAEFLIGGVAGQDLPQSEGADVVK02549.31264HLAEFLIGGVAGQDLPQSEGADVVKlight2549.3126850.77813+M+1851.1124 
HLAEFLIGGVAGQDLPQSEGADVVK02549.31264HLAEFLIGGVAGQDLPQSEGADVVKlight2549.3126850.77813+M+2851.4467 
QETLLTTAIYK01279.70246QETLLTTAIYKlight1279.7024640.85852+M640.8585 
QETLLTTAIYK01279.70246QETLLTTAIYKlight1279.7024640.85852+M+1641.3600 
QETLLTTAIYK01279.70246QETLLTTAIYKlight1279.7024640.85852+M+2641.8613 
QAIGQLAQNLFAK01400.77767QAIGQLAQNLFAKlight1400.7776701.39612+M701.3961 
QAIGQLAQNLFAK01400.77767QAIGQLAQNLFAKlight1400.7776701.39612+M+1701.8975 
QAIGQLAQNLFAK01400.77767QAIGQLAQNLFAKlight1400.7776701.39612+M+2702.3989 
EVIVAGLPK0924.56441EVIVAGLPKlight924.5644463.28952+M463.2895 
EVIVAGLPK0924.56441EVIVAGLPKlight924.5644463.28952+M+1463.7910 
EVIVAGLPK0924.56441EVIVAGLPKlight924.5644463.28952+M+2464.2923 
DLVTVFPEVVK01244.70162DLVTVFPEVVKlight1244.7016623.35812+M623.3581 
DLVTVFPEVVK01244.70162DLVTVFPEVVKlight1244.7016623.35812+M+1623.8596 
DLVTVFPEVVK01244.70162DLVTVFPEVVKlight1244.7016623.35812+M+2624.3610 
VVETGGNSFAAER01335.64198VVETGGNSFAAERlight1335.6419668.82822+M668.8282 
VVETGGNSFAAER01335.64198VVETGGNSFAAERlight1335.6419668.82822+M+1669.3296 
VVETGGNSFAAER01335.64198VVETGGNSFAAERlight1335.6419668.82822+M+2669.8310 
NTYTNTLLR01094.57205NTYTNTLLRlight1094.5720548.29332+M548.2933 
NTYTNTLLR01094.57205NTYTNTLLRlight1094.5720548.29332+M+1548.7947 
NTYTNTLLR01094.57205NTYTNTLLRlight1094.5720548.29332+M+2549.2960 
AGIEVITISAGELGR01484.81999AGIEVITISAGELGRlight1484.8199743.41722+M743.4172 
AGIEVITISAGELGR01484.81999AGIEVITISAGELGRlight1484.8199743.41722+M+1743.9187 
AGIEVITISAGELGR01484.81999AGIEVITISAGELGRlight1484.8199743.41722+M+2744.4200 
sp|P59300|ARGB_PSEPK Acetylglutamate kinase OS=Pseudomonas putida (strain KT2440) GN=argB PE=3 SV=1
PeptidePeptide AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor AnnotationsLabelPrecursor Neutral MassQ1 m/zQ1 ZFragmentQ3 m/zQ3 Z
DIVNLINR0955.54511DIVNLINRlight955.5451478.77982+M478.7798 
DIVNLINR0955.54511DIVNLINRlight955.5451478.77982+M+1479.2812 
DIVNLINR0955.54511DIVNLINRlight955.5451478.77982+M+2479.7825 
sp|Q88QQ6|ARGC1_PSEPK N-acetyl-gamma-glutamyl-phosphate reductase 1 OS=Pseudomonas putida (strain KT2440) GN=argC1 PE=3 SV=1
PeptidePeptide AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor AnnotationsLabelPrecursor Neutral MassQ1 m/zQ1 ZFragmentQ3 m/zQ3 Z
LLAQHPQAEVAVITSR01731.96321LLAQHPQAEVAVITSRlight1731.9632578.32833+M578.3283 
LLAQHPQAEVAVITSR01731.96321LLAQHPQAEVAVITSRlight1731.9632578.32833+M+1578.6626 
LLAQHPQAEVAVITSR01731.96321LLAQHPQAEVAVITSRlight1731.9632578.32833+M+2578.9969 
VIDLSADFR01034.53972VIDLSADFRlight1034.5397518.27712+M518.2771 
VIDLSADFR01034.53972VIDLSADFRlight1034.5397518.27712+M+1518.7786 
VIDLSADFR01034.53972VIDLSADFRlight1034.5397518.27712+M+2519.2799