psb33_vs_WT_thylakoid_proteins_ratios.sky.zip

UTurkuPlantBio - PSB33
Name: psb33_vs_WT_thylakoid_proteins_ratios.sky.zip (13 MB)   1 version
 
13 proteins, 54 peptides, 67 precursors, 262 transitions  -  40 replicates  -  Skyline (64-bit) 3.6.0.10493
Protein / LabelDescriptionProtein Note/Annotations 
ATCG00270.1 | Symbols: PSBD | photosystem II reaction center protein D | chrC:32711-33772 FORWARD LENGTH=353
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
AYDFVSQEIR01226.59323AYDFVSQEIRlight2+614.30391226.5932321.3341 
AAEDPEFETFYTK01546.68281AAEDPEFETFYTKlight2+774.34871546.6828326.1355 
AAEDPEFETFYTKNILLNEGIR12569.27004AAEDPEFETFYTKNILLNEGIRlight3+857.43062569.2700334.8634 
NILLNEGIR01040.59782NILLNEGIRlight2+521.30621040.5978318.5442 
ATCG00680.1 | Symbols: PSBB | photosystem II reaction center protein B | chrC:72371-73897 FORWARD LENGTH=508
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
RVSAGLAENQSLSEAWAK11915.97525RVSAGLAENQSLSEAWAKlight2+958.99491915.9752331.6748 
RVSAGLAENQSLSEAWAK11915.97525RVSAGLAENQSLSEAWAKlight3+639.66571915.9752326.5883 
VSAGLAENQSLSEAWAK01759.87411VSAGLAENQSLSEAWAKlight2+880.94431759.8741429.3333 
VSAGLAENQSLSEAWAK01759.87411VSAGLAENQSLSEAWAKlight3+587.63201759.8741424.6110 
IPEKLAFYDYIGNNPAK11952.00447IPEKLAFYDYIGNNPAKlight3+651.67541952.0044327.0447 
LAFYDYIGNNPAK01484.73003LAFYDYIGNNPAKlight2+743.37231484.7300325.2062 
LAFYDYIGNNPAK01484.73003LAFYDYIGNNPAKlight3+495.91731484.7300321.1259 
LAFYDYIGNNPAKGGLFR12015.02658LAFYDYIGNNPAKGGLFRlight3+672.68282015.0265427.8429 
RAQLGEIFELDR11445.76274RAQLGEIFELDRlight2+723.88861445.7627324.6217 
RAQLGEIFELDR11445.76274RAQLGEIFELDRlight3+482.92821445.7627420.6323 
RAQLGEIFELDRATLK21859.02656RAQLGEIFELDRATLKlight3+620.68281859.0265325.8669 
AQLGEIFELDR01289.66162AQLGEIFELDRlight2+645.83811289.6616322.2801 
ATCG00350.1 | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
EIPLPHEFILNR01476.80891EIPLPHEFILNRlight2+739.41171476.8089425.0874 
EIPLPHEFILNR01476.80891EIPLPHEFILNRlight3+493.27691476.8089421.0255 
YSEFLTFR01061.51823YSEFLTFRlight2+531.76641061.5182318.8580 
ALSIIQGR0856.51312ALSIIQGRlight2+429.2638856.5131415.7829 
ATCG00340.1 | Symbols: PSAB | Photosystem I, PsaA/PsaB protein | chrC:37375-39579 REVERSE LENGTH=734
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
QILIEPIFAQWIQSAHGK02078.13133QILIEPIFAQWIQSAHGKlight2+1040.07292078.1313534.1072 
QILIEPIFAQWIQSAHGK02078.13133QILIEPIFAQWIQSAHGKlight3+693.71772078.1313528.6423 
TSYGFDVLLSSTSGPAFNAGR02146.03311TSYGFDVLLSSTSGPAFNAGRlight2+1074.02382146.0331535.1257 
TSYGFDVLLSSTSGPAFNAGR02146.03311TSYGFDVLLSSTSGPAFNAGRlight3+716.35162146.0331529.5024 
TPLANLIR0896.54442TPLANLIRlight2+449.2795896.5444416.3834 
AT1G68830.1 | Symbols: STN7 | STT7 homolog STN7 | chr1:25872654-25875473 REVERSE LENGTH=562
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
LGEGSFGVVYK01154.59723LGEGSFGVVYKlight2+578.30591154.5972520.2542 
SDSNLIQFNR01192.58372SDSNLIQFNRlight2+597.29911192.5837420.8240 
DGGFTETQLQELR01492.71581DGGFTETQLQELRlight2+747.36521492.7158425.3260 
AT5G01920.1 | Symbols: STN8 | Protein kinase superfamily protein | chr5:359154-360867 FORWARD LENGTH=495
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
NSTLVDDVR01017.50913NSTLVDDVRlight2+509.76181017.5091418.1979 
LIDFGAAADLR01160.61901LIDFGAAADLRlight2+581.31681160.6190420.3445 
TRPDLSILDLDSGR01556.81582TRPDLSILDLDSGRlight3+519.94591556.8158422.0389 
AT4G27800.1 | Symbols: TAP38, PPH1 | thylakoid-associated phosphatase 38 | chr4:13852013-13854091 REVERSE LENGTH=388
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
AFESVDR0822.38721AFESVDRlight2+412.2009822.3872315.2710 
SSDVVSYVR01010.50333SSDVVSYVRlight2+506.25891010.5033318.0928 
SQDNISIIIADLGR01513.81002SQDNISIIIADLGRlight2+757.91231513.8100425.6424 
AT1G71500.1 | Symbols: | Rieske (2Fe-2S) domain-containing protein | chr1:26936084-26937331 FORWARD LENGTH=287
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
VLTPALR0768.48583VLTPALRlight2+385.2502768.4858514.4625 
TEAAAEIVFSGK01221.62411TEAAAEIVFSGKlight2+611.81931221.6241421.2596 
AQPGLTATNVNVDEVR01682.85882AQPGLTATNVNVDEVRlight2+842.43671682.8588428.1781 
AQPGLTATNVNVDEVR01682.85882AQPGLTATNVNVDEVRlight3+561.96021682.8588423.6355 
AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B binding protein 3 | chr1:10472443-10473246 REVERSE LENGTH=267
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
TVAKPK0642.40654TVAKPKlight2+322.2105642.4065512.5713 
TVAKPK0722.37287TVAKPKlight2+362.1937722.3728913.7708 
GPSGSPWYGSDR01264.54732GPSGSPWYGSDRlight2+633.28091264.5473421.9034 
NRELEVIHSR11251.66845NRELEVIHSRlight3+418.23011251.6684418.1737 
ELEVIHSR0981.52433ELEVIHSRlight2+491.7694981.5243517.6581 
ELEVIHSR0981.52433ELEVIHSRlight3+328.1821981.5243514.7519 
ELEVIHSRWAMLGALGCVFPELLAR12946.46498ELEVIHSRWAMLGALGCVFPELLARlight3+983.16232946.4649539.6412 
NGVKFGEAVWFK11380.71906NGVKFGEAVWFKlight2+691.36681380.7190423.6460 
NGVKFGEAVWFK11380.71906NGVKFGEAVWFKlight3+461.24701380.7190319.8084 
FGEAVWFK0982.49131FGEAVWFKlight2+492.2529982.4913417.6726 
AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light harvesting complex gene 2.1 | chr2:1823449-1824331 REVERSE LENGTH=265
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
STPQSIWYGPDRPK01630.81041STPQSIWYGPDRPKlight2+816.41251630.8104427.3974 
STPQSIWYGPDRPK01630.81041STPQSIWYGPDRPKlight3+544.61071630.8104422.9762 
ELEVIHSRWAMLGALGCTFPEILSK12936.43302ELEVIHSRWAMLGALGCTFPEILSKlight3+979.81832936.4330539.5141