1. Targeted MS Runs

2016 June 15 geoduck SRM rev_2017-04-17_10-10-38.sky.zip

Nunn - Geoduck Reproduction

Document Summary

 
Name: 2016 June 15 geoduck SRM rev_2017-04-17_10-10-38.sky.zip (135 MB)
  1 version
 
29 proteins, 78 peptides, 78 precursors, 285 transitions  -  54 replicates, 78 calibration curves  -  Skyline-daily (64-bit) 3.6.1.10615

Transition List

 
Protein / Label
Description
Protein Annotations
 
PRTC peptides  
Peptide
Peptide Annotations
Missed Cleavages
Peptide Neutral Mass
Rank
Precursor
Precursor Annotations
Label
Precursor Neutral Mass
Q1 m/z
Q1 Z
Fragment
Q3 m/z
Q3 Z
LSSEAPALFQFDLK01564.8137 LSSEAPALFQFDLKheavy1572.8279787.42122+y91086.60741+
LSSEAPALFQFDLK01564.8137 LSSEAPALFQFDLKheavy1572.8279787.42122+y6805.43341+
LSSEAPALFQFDLK01564.8137 LSSEAPALFQFDLKheavy1572.8279787.42122+y5658.36501+
LTILEELR0985.5808 LTILEELRheavy995.5891498.80182+y6782.46461+
LTILEELR0985.5808 LTILEELRheavy995.5891498.80182+y5669.38051+
LTILEELR0985.5808 LTILEELRheavy995.5891498.80182+y4556.29651+
SFANQPLEVVYSK01480.7562 SFANQPLEVVYSKheavy1488.7704745.39252+y8942.53861+
SFANQPLEVVYSK01480.7562 SFANQPLEVVYSKheavy1488.7704745.39252+y4504.29081+
SFANQPLEVVYSK01480.7562 SFANQPLEVVYSKheavy1488.7704745.39252+y3405.22241+
GILFVGSGVSGGEEGAR01590.8002 GILFVGSGVSGGEEGARheavy1600.8085801.41152+y121072.48931+
GILFVGSGVSGGEEGAR01590.8002 GILFVGSGVSGGEEGARheavy1600.8085801.41152+y10928.43581+
GILFVGSGVSGGEEGAR01590.8002 GILFVGSGVSGGEEGARheavy1600.8085801.41152+y9871.41441+
GLILVGGYGTR01104.6291 GLILVGGYGTRheavy1114.6374558.32602+y8832.45511+
GLILVGGYGTR01104.6291 GLILVGGYGTRheavy1114.6374558.32602+y7719.37101+
GLILVGGYGTR01104.6291 GLILVGGYGTRheavy1114.6374558.32602+y6620.30261+
ELGQSGVDTYLQTK01537.7624 ELGQSGVDTYLQTKheavy1545.7766773.89562+y101119.57721+
ELGQSGVDTYLQTK01537.7624 ELGQSGVDTYLQTKheavy1545.7766773.89562+y7876.45531+
ELGQSGVDTYLQTK01537.7624 ELGQSGVDTYLQTKheavy1545.7766773.89562+y4497.31731+
SAAGAFGPELSR01161.5778 SAAGAFGPELSRheavy1171.5861586.80032+y7815.42851+
SAAGAFGPELSR01161.5778 SAAGAFGPELSRheavy1171.5861586.80032+y6668.36011+
SAAGAFGPELSR01161.5778 SAAGAFGPELSRheavy1171.5861586.80032+y5611.33871+
TASEFDSAIAQDK01381.6361 TASEFDSAIAQDKheavy1389.6503695.83242+y91002.49821+
TASEFDSAIAQDK01381.6361 TASEFDSAIAQDKheavy1389.6503695.83242+y8855.42981+
TASEFDSAIAQDK01381.6361 TASEFDSAIAQDKheavy1389.6503695.83242+y4469.24961+
IGDYAGIK0835.4440 IGDYAGIKheavy843.4582422.73642+y6674.35991+
IGDYAGIK0835.4440 IGDYAGIKheavy843.4582422.73642+y5559.33301+
IGDYAGIK0835.4440 IGDYAGIKheavy843.4582422.73642+y4396.26961+
DIPVPKPK0892.5382 DIPVPKPKheavy900.5524451.28352+y6673.44871+
DIPVPKPK0892.5382 DIPVPKPKheavy900.5524451.28352+y5576.39591+
DIPVPKPK0892.5382 DIPVPKPKheavy900.5524451.28352+y4477.32751+
HVLTSIGEK0982.5447 HVLTSIGEKheavy990.5589496.28672+y7755.43891+
HVLTSIGEK0982.5447 HVLTSIGEKheavy990.5589496.28672+y6642.35481+
HVLTSIGEK0982.5447 HVLTSIGEKheavy990.5589496.28672+y5541.30721+
GISNEGQNASIK01216.6048 GISNEGQNASIKheavy1224.6190613.31682+y101055.52071+
GISNEGQNASIK01216.6048 GISNEGQNASIKheavy1224.6190613.31682+y8854.44581+
GISNEGQNASIK01216.6048 GISNEGQNASIKheavy1224.6190613.31682+y7725.40321+
SSAAPPPPPR0975.5138 SSAAPPPPPRheavy985.5220493.76832+y6670.39101+
SSAAPPPPPR0975.5138 SSAAPPPPPRheavy985.5220493.76832+y5573.33831+
SSAAPPPPPR0975.5138 SSAAPPPPPRheavy985.5220493.76832+y4476.28551+
ELASGLSFPVGFK01350.7184 ELASGLSFPVGFKheavy1358.7326680.37362+y9959.54401+
ELASGLSFPVGFK01350.7184 ELASGLSFPVGFKheavy1358.7326680.37362+y7789.43851+
ELASGLSFPVGFK01350.7184 ELASGLSFPVGFKheavy1358.7326680.37362+y6702.40651+
peptides1 Bacteriocin amylovorin-L (Amylovorin-L471) (Lactobin-A)
Peptide
Peptide Annotations
Missed Cleavages
Peptide Neutral Mass
Rank
Precursor
Precursor Annotations
Label
Precursor Neutral Mass
Q1 m/z
Q1 Z
Fragment
Q3 m/z
Q3 Z
NGFILDGFPR01134.5822 NGFILDGFPRheavy1144.5905573.30252+y7827.46491+
NGFILDGFPR01134.5822 NGFILDGFPRheavy1144.5905573.30252+y6714.38091+
NGFILDGFPR01134.5822 NGFILDGFPRheavy1144.5905573.30252+y5601.29681+
Serum_Albumin: gi|1351907|
Peptide
Peptide Annotations
Missed Cleavages
Peptide Neutral Mass
Rank
Precursor
Precursor Annotations
Label
Precursor Neutral Mass
Q1 m/z
Q1 Z
Fragment
Q3 m/z
Q3 Z
LVNELTEFAK01162.6234 LVNELTEFAKlight1162.6234582.31902+y8951.47821+
LVNELTEFAK01162.6234 LVNELTEFAKlight1162.6234582.31902+y7837.43531+
LVNELTEFAK01162.6234 LVNELTEFAKlight1162.6234582.31902+y6708.39271+
LVNELTEFAK01162.6234 LVNELTEFAKlight1162.6234582.31902+y5595.30861+
ATEEQLK0817.4181 ATEEQLKlight817.4181409.71632+y5646.34061+
ATEEQLK0817.4181 ATEEQLKlight817.4181409.71632+y4517.29801+
ATEEQLK0817.4181 ATEEQLKlight817.4181409.71632+y3388.25541+
ATEEQLK0817.4181 ATEEQLKlight817.4181409.71632+y2260.19691+
EF cds.comp133422_c0_seq1|m.21474 comp133422_c0_seq1|g.21474 ORF comp133422_c0_seq1|g.21474 comp133422_c0_seq1|m.21474 type:complete len:296 (+) comp133422_c0_seq1:81-968(+)
Peptide
Peptide Annotations
Missed Cleavages
Peptide Neutral Mass
Rank
Precursor
Precursor Annotations
Label
Precursor Neutral Mass
Q1 m/z
Q1 Z
Fragment
Q3 m/z
Q3 Z
NALSLAMLR0987.5535 NALSLAMLRlight987.5535494.78402+y6690.39671+
NALSLAMLR0987.5535 NALSLAMLRlight987.5535494.78402+y5603.36471+
NALSLAMLR0987.5535 NALSLAMLRlight987.5535494.78402+y4490.28061+
EF cds.comp134572_c0_seq1|m.22979 comp134572_c0_seq1|g.22979 ORF comp134572_c0_seq1|g.22979 comp134572_c0_seq1|m.22979 type:3prime_partial len:377 (+) comp134572_c0_seq1:139-1266(+)
Peptide
Peptide Annotations
Missed Cleavages
Peptide Neutral Mass
Rank
Precursor
Precursor Annotations
Label
Precursor Neutral Mass
Q1 m/z
Q1 Z
Fragment
Q3 m/z
Q3 Z
ITVGEAITECDLK01447.7228 ITVGEAITECDLKlight1447.7228724.86872+y101135.53001+
ITVGEAITECDLK01447.7228 ITVGEAITECDLKlight1447.7228724.86872+y8949.46591+
ITVGEAITECDLK01447.7228 ITVGEAITECDLKlight1447.7228724.86872+y7878.42881+
ITVGEAITECDLK01447.7228 ITVGEAITECDLKlight1447.7228724.86872+y6765.34471+
GTLMLDCK0936.4409 GTLMLDCKlight936.4409469.22772+y5666.29491+
GTLMLDCK0936.4409 GTLMLDCKlight936.4409469.22772+y4535.25451+
GTLMLDCK0936.4409 GTLMLDCKlight936.4409469.22772+y3422.17041+
EF cds.comp141647_c0_seq1|m.39026 comp141647_c0_seq1|g.39026 ORF comp141647_c0_seq1|g.39026 comp141647_c0_seq1|m.39026 type:complete len:2412 (+) comp141647_c0_seq1:89-7324(+)
Peptide
Peptide Annotations
Missed Cleavages
Peptide Neutral Mass
Rank
Precursor
Precursor Annotations
Label
Precursor Neutral Mass
Q1 m/z
Q1 Z
Fragment
Q3 m/z
Q3 Z
AIISADDLAK01015.5550 AIISADDLAKlight1015.5550508.78482+y7719.35701+
AIISADDLAK01015.5550 AIISADDLAKlight1015.5550508.78482+y6632.32501+
AIISADDLAK01015.5550 AIISADDLAKlight1015.5550508.78482+y4446.26091+
AIISADDLAK01015.5550 AIISADDLAKlight1015.5550508.78482+y3331.23401+
EASQQQQFNR01234.5691 EASQQQQFNRlight1234.5691618.29182+y6820.40601+
EASQQQQFNR01234.5691 EASQQQQFNRlight1234.5691618.29182+y5692.34741+
EASQQQQFNR01234.5691 EASQQQQFNRlight1234.5691618.29182+y4564.28891+
EASQQQQFNR01234.5691 EASQQQQFNRlight1234.5691618.29182+y3436.23031+
LQELNSIADR01157.6041 LQELNSIADRlight1157.6041579.80932+y7788.42611+
LQELNSIADR01157.6041 LQELNSIADRlight1157.6041579.80932+y6675.34201+
LQELNSIADR01157.6041 LQELNSIADRlight1157.6041579.80932+y5561.29911+
LQELNSIADR01157.6041 LQELNSIADRlight1157.6041579.80932+y3361.18301+
LF cds.comp130260_c0_seq1|m.17926 comp130260_c0_seq1|g.17926 ORF comp130260_c0_seq1|g.17926 comp130260_c0_seq1|m.17926 type:complete len:378 (+) comp130260_c0_seq1:80-1213(+)
Peptide
Peptide Annotations
Missed Cleavages
Peptide Neutral Mass
Rank
Precursor
Precursor Annotations
Label
Precursor Neutral Mass
Q1 m/z
Q1 Z
Fragment
Q3 m/z
Q3 Z
APEVEEPEK01026.4870 APEVEEPEKlight1026.4870514.25082+y6730.36181+
APEVEEPEK01026.4870 APEVEEPEKlight1026.4870514.25082+y5631.29331+
APEVEEPEK01026.4870 APEVEEPEKlight1026.4870514.25082+y4502.25081+
APEVEEPEK01026.4870 APEVEEPEKlight1026.4870514.25082+y3373.20821+
EEELIDYMVK01267.6006 EEELIDYMVKlight1267.6006634.80762+y6768.39601+
EEELIDYMVK01267.6006 EEELIDYMVKlight1267.6006634.80762+y5655.31201+
EEELIDYMVK01267.6006 EEELIDYMVKlight1267.6006634.80762+y4540.28501+
LF cds.comp132950_c0_seq2|m.20866 comp132950_c0_seq2|g.20866 ORF comp132950_c0_seq2|g.20866 comp132950_c0_seq2|m.20866 type:internal len:375 (-) comp132950_c0_seq2:2-1123(-)
Peptide
Peptide Annotations
Missed Cleavages
Peptide Neutral Mass
Rank
Precursor
Precursor Annotations
Label
Precursor Neutral Mass
Q1 m/z
Q1 Z
Fragment
Q3 m/z
Q3 Z
VTPFTEEYDVK01326.6343 VTPFTEEYDVKlight1326.6343664.32442+y91127.52551+
VTPFTEEYDVK01326.6343 VTPFTEEYDVKlight1326.6343664.32442+y81030.47281+
VTPFTEEYDVK01326.6343 VTPFTEEYDVKlight1326.6343664.32442+y7883.40441+
EDIGIGSYSVCK01326.6126 EDIGIGSYSVCKlight1326.6126664.31362+y9970.46621+
EDIGIGSYSVCK01326.6126 EDIGIGSYSVCKlight1326.6126664.31362+y6743.33931+
EDIGIGSYSVCK01326.6126 EDIGIGSYSVCKlight1326.6126664.31362+y4493.24391+
EDIGIGSYSVCK01326.6126 EDIGIGSYSVCKlight1326.6126664.31362+y3406.21191+
LF cds.comp138018_c0_seq1|m.29238 comp138018_c0_seq1|g.29238 ORF comp138018_c0_seq1|g.29238 comp138018_c0_seq1|m.29238 type:complete len:203 (-) comp138018_c0_seq1:983-1591(-)
Peptide
Peptide Annotations
Missed Cleavages
Peptide Neutral Mass
Rank
Precursor
Precursor Annotations
Label
Precursor Neutral Mass
Q1 m/z
Q1 Z
Fragment
Q3 m/z
Q3 Z
YEVLSGEEER01209.5513 YEVLSGEEERlight1209.5513605.78292+y7819.38431+
YEVLSGEEER01209.5513 YEVLSGEEERlight1209.5513605.78292+y6706.30021+
YEVLSGEEER01209.5513 YEVLSGEEERlight1209.5513605.78292+y5619.26821+
YEVLSGEEER01209.5513 YEVLSGEEERlight1209.5513605.78292+y3433.20411+
EATTLPSYEEAEQSK01681.7683 EATTLPSYEEAEQSKlight1681.7683841.89142+y101167.51641+
EATTLPSYEEAEQSK01681.7683 EATTLPSYEEAEQSKlight1681.7683841.89142+y5562.28311+
EATTLPSYEEAEQSK01681.7683 EATTLPSYEEAEQSKlight1681.7683841.89142+y4491.24601+
LF cds.comp141647_c0_seq1|m.39026 comp141647_c0_seq1|g.39026 ORF comp141647_c0_seq1|g.39026 comp141647_c0_seq1|m.39026 type:complete len:2412 (+) comp141647_c0_seq1:89-7324(+)
Peptide
Peptide Annotations
Missed Cleavages
Peptide Neutral Mass
Rank
Precursor
Precursor Annotations
Label
Precursor Neutral Mass
Q1 m/z
Q1 Z
Fragment
Q3 m/z
Q3 Z
IEAIQTSGEQLLAEEHYASDTIR02573.2609 IEAIQTSGEQLLAEEHYASDTIRlight2573.2609858.76093+y121404.67541+
IEAIQTSGEQLLAEEHYASDTIR02573.2609 IEAIQTSGEQLLAEEHYASDTIRlight2573.2609858.76093+y111291.59131+
IEAIQTSGEQLLAEEHYASDTIR02573.2609 IEAIQTSGEQLLAEEHYASDTIRlight2573.2609858.76093+y101220.55421+
IEAIQTSGEQLLAEEHYASDTIR02573.2609 IEAIQTSGEQLLAEEHYASDTIRlight2573.2609858.76093+y3389.25071+
LDPSLSASR0944.4927 LDPSLSASRlight944.4927473.25362+y7717.38901+
LDPSLSASR0944.4927 LDPSLSASRlight944.4927473.25362+y6620.33621+
LDPSLSASR0944.4927 LDPSLSASRlight944.4927473.25362+y5533.30421+
LDPSLSASR0944.4927 LDPSLSASRlight944.4927473.25362+y4420.22011+
AQTLGSAHEVQR01295.6582 AQTLGSAHEVQRlight1295.6582432.89333+y8883.43811+
AQTLGSAHEVQR01295.6582 AQTLGSAHEVQRlight1295.6582432.89333+y5668.34741+
AQTLGSAHEVQR01295.6582 AQTLGSAHEVQRlight1295.6582432.89333+y4531.28851+
AQTLGSAHEVQR01295.6582 AQTLGSAHEVQRlight1295.6582432.89333+y3402.24591+