B12_melanoma_reproducibility_test_2016-12-28_19-49-39.sky.zip

Liebler - Melanoma Paper
Name: B12_melanoma_reproducibility_test_2016-12-28_19-49-39.sky.zip (302 MB)   1 version
 
13 proteins, 35 peptides, 50 precursors, 155 transitions  -  25 replicates  -  Skyline-daily (64-bit) 3.6.1.10279
Protein / LabelDescriptionProtein Note/Annotations 
CD3D  
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
IPIEELEDRnd01112.5714 IPIEELEDRlight2+557.29301112.5714319.6238 
IPIEELEDRnd01112.5714 IPIEELEDRheavy2+562.29711122.5796319.6238 
CD3E  
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
GSKPEDANFYLYLR201671.8257 GSKPEDANFYLYLRlight2+836.92011671.8257328.0126 
GSKPEDANFYLYLR201671.8257 GSKPEDANFYLYLRheavy2+841.92421681.8339328.0126 
CD3G  
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
WNLGSNAK1.20888.4454 WNLGSNAKlight2+445.2300888.4454316.2619 
WNLGSNAK1.20888.4454 WNLGSNAKheavy2+449.2371896.4596316.2619 
CD4  
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
ILGNQGSFLTK1.101176.6503 ILGNQGSFLTKlight2+589.33241176.6503320.5850 
ILGNQGSFLTK1.101176.6503 ILGNQGSFLTKheavy2+593.33951184.6645320.5850 
SLWDQGNFPLIIK001529.8242 SLWDQGNFPLIIKlight2+765.91941529.8242325.8826 
SLWDQGNFPLIIK001529.8242 SLWDQGNFPLIIKheavy2+769.92651537.8384325.8826 
CD8A  
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
LGDTFVLTLSDFRnd01482.7718 LGDTFVLTLSDFRlight2+742.39321482.7718325.1768 
LGDTFVLTLSDFRnd01482.7718 LGDTFVLTLSDFRheavy2+747.39731492.7801325.1768 
CD8B  eliminate y5 to improve visualization
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
GTIHGEEVEQEKnd01354.6365 GTIHGEEVEQEKlight3+452.55281354.6365319.4780 
GTIHGEEVEQEKnd01354.6365 GTIHGEEVEQEKheavy3+455.22421362.6507319.4780 
PD1L1  
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
NIIQFVHGEEDLKnd01540.7886 NIIQFVHGEEDLKlight3+514.60351540.7886321.8359 
NIIQFVHGEEDLKnd01540.7886 NIIQFVHGEEDLKheavy3+517.27491548.8028321.8359 
VNAPYNK10804.4130 VNAPYNKlight2+403.2138804.4130315.0014 
VNAPYNK10804.4130 VNAPYNKheavy2+407.2209812.4272315.0014 
LQDAGVYR10920.4716 LQDAGVYRlight2+461.2431920.4716316.7423 
LQDAGVYR10920.4716 LQDAGVYRheavy2+466.2472930.4798316.7423 
PDL2  
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
ATLLEEQLPLGK101310.7446 ATLLEEQLPLGKlight2+656.37961310.7446322.5964 
ATLLEEQLPLGK101310.7446 ATLLEEQLPLGKheavy2+660.38671318.7588322.5964 
TPEGLYQVTSVLR101461.7827 TPEGLYQVTSVLRlight2+731.89861461.7827324.8620 
TPEGLYQVTSVLR101461.7827 TPEGLYQVTSVLRheavy2+736.90281471.7910324.8620 
PD1|NP_005009.2| programmed cell death protein 1 precursor [Homo sapiens]
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
LAAFPEDR1.10917.4607 LAAFPEDRlight2+459.7376917.4607316.6971 
LAAFPEDR1.10917.4607 LAAFPEDRheavy2+464.7418927.4689316.6971 
VTQLPNGR10883.4876 VTQLPNGRlight2+442.7511883.4876316.1875 
VTQLPNGR10883.4876 VTQLPNGRheavy2+447.7552893.4958316.1875 
Actin  
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
GYSFTTTAER1.501131.5197 GYSFTTTAERlight2+566.76711131.5197319.9080 
GYSFTTTAER1.501131.5197 GYSFTTTAERheavy2+571.77121141.5279319.9080