Detection of Low Abundance Bacteria Peptides SRM_2016-08-08_14-16-07.sky.zip

Nunn - Detection of Low Abundance Ocean Bacteria Peptides
Name: Detection of Low Abundance Bacteria Peptides SRM_2016-08-08_14-16-07.sky.zip (58 MB)   1 version
 
24 proteins, 74 peptides, 74 precursors, 339 transitions  -  24 replicates  -  Skyline-daily (64-bit) 3.5.1.9942
Protein / LabelDescriptionProtein Note/Annotations 
PRTC peptides  
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
LSSEAPALFQFDLK01564.8137 LSSEAPALFQFDLKheavy2+787.42121572.8279326.4074 
LTILEELR0985.5808 LTILEELRheavy2+498.8018995.5891317.7189 
SFANQPLEVVYSK01480.7562 SFANQPLEVVYSKheavy2+745.39251488.7704325.1466 
GILFVGSGVSGGEEGAR01590.8002 GILFVGSGVSGGEEGARheavy2+801.41151600.8085326.7972 
ELGQSGVDTYLQTK01537.7624 ELGQSGVDTYLQTKheavy2+773.89561545.7766326.0017 
TASEFDSAIAQDK01381.6361 TASEFDSAIAQDKheavy2+695.83241389.6503323.6598 
DIPVPKPK0892.5382 DIPVPKPKheavy2+451.2835900.5524316.3233 
HVLTSIGEK0982.5447 HVLTSIGEKheavy2+496.2867990.5589317.6734 
SSAAPPPPPR0975.5138 SSAAPPPPPRheavy2+493.7683985.5220317.5679 
ELASGLSFPVGFK01350.7184 ELASGLSFPVGFKheavy2+680.37361358.7326323.1960 
sp|Q5LNP1|ATPB_RUEPO ATP synthase subunit beta OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=atpD PE=3 SV=1
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
AIHQPAPSFDEQSTSSDILVTGIK02540.2758 AIHQPAPSFDEQSTSSDILVTGIKlight3+847.76592540.2758534.4961 
IPSAVGYQPTLATDMGAMQER02235.0664 IPSAVGYQPTLATDMGAMQERlight3+746.02942235.0664530.6301 
AISELGIYPAVDPLDSSSR01989.0055 AISELGIYPAVDPLDSSSRlight3+664.00911989.0055527.5133 
sp|Q5LMR5|EFTU_RUEPO Elongation factor Tu OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=tuf1 PE=3 SV=1
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
GITISTAHVEYETDSR01777.8483 GITISTAHVEYETDSRlight2+889.93141777.8483529.6029 
VDQVDDEELLELVEMEIR02173.0460 VDQVDDEELLELVEMEIRlight3+725.35602173.0460529.8445 
ALMAAVDEYIPTPAR01616.8232 ALMAAVDEYIPTPARlight2+809.41891616.8232527.1876 
sp|Q5LU99|HIS6_RUEPO Imidazole glycerol phosphate synthase subunit HisF OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=hisF PE=3 SV=1
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
AYDAAGADEICFLDIHATHENR02488.1077 AYDAAGADEICFLDIHATHENRlight3+830.37652488.1077533.8353 
VSFNSAAVANPDVIAEAADR02015.9912 VSFNSAAVANPDVIAEAADRlight3+673.00442015.9912527.8552 
KPTGIDAVEFAR01302.6932 KPTGIDAVEFARlight2+652.35391302.6932522.4756 
sp|Q5LSU1|LPXB_RUEPO Lipid-A-disaccharide synthase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=lpxB PE=3 SV=1
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
TELGLGAAPVLLALPGSR01734.0040 TELGLGAAPVLLALPGSRlight2+868.00931734.0040528.9453 
LAPVFGAALR01013.6022 LAPVFGAALRlight2+507.80841013.6022418.1393 
LAAVHADPAAQDAAMR01606.7886 LAAVHADPAAQDAAMRlight2+804.40161606.7886427.0370 
sp|Q5LN23|PNP_RUEPO Polyribonucleotide nucleotidyltransferase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=pnp PE=3 SV=1
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
SMQWGEETLTLESGK01694.7822 SMQWGEETLTLESGKlight2+848.39841694.7822528.3570 
VGYVDGEYVLNPTVDDMQDLR02397.1158 VGYVDGEYVLNPTVDDMQDLRlight3+800.04592397.1158532.6827 
LDLVVAGTK0914.5437 LDLVVAGTKlight2+458.2791914.5437416.6534 
tr|Q5LQQ3|Q5LQQ3_RUEPO Fumarylacetoacetate hydrolase family protein OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=SPO2435 PE=4 SV=1
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
DLSAHVPDLSGAAVSIEALDALR02319.2070 DLSAHVPDLSGAAVSIEALDALRlight3+774.07632319.2070531.6959 
AIDPATLPLVADPGR01504.8249 AIDPATLPLVADPGRlight2+753.41971504.8249525.5076 
TTSCLSGPNDPVIIPR01725.8720 TTSCLSGPNDPVIIPRlight2+863.94331725.8720528.8233 
tr|Q5LUX0|Q5LUX0_RUEPO Methylmalonyl-CoA epimerase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=SPO0932 PE=4 SV=1
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
LNHVAIAVPDLEAASAQYR02037.0643 LNHVAIAVPDLEAASAQYRlight3+680.02872037.0643528.1221 
VGAPQDEPDHGVTVVFIELPNTK02461.2489 VGAPQDEPDHGVTVVFIELPNTKlight3+821.42362461.2489533.4951 
IELLYPLGENSPIQGFLDK02145.1358 IELLYPLGENSPIQGFLDKlight3+716.05252145.1358529.4910 
tr|Q5LSB9|Q5LSB9_RUEPO Branched-chain amino acid ABC transporter, ATP-binding protein OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=SPO1849 PE=4 SV=1
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
STVFNLISR01035.5713 STVFNLISRlight2+518.79291035.5713418.4688 
TNLFSEIFFTPSAR01628.8199 TNLFSEIFFTPSARlight2+815.41721628.8199427.3675 
VLAMADGAK0874.4582 VLAMADGAKlight2+438.2364874.4582416.0521 
tr|Q5LRJ4|Q5LRJ4_RUEPO Outer membrane protein, putative OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=SPO2133 PE=4 SV=1
PeptidePeptide Note/AnnotationsMissed CleavagesPeptide Neutral MassRankPrecursorPrecursor Note/AnnotationsLabelQ1 ZQ1 m/zPrecursor Neutral MassTransition CountCEDP
FVMGGELEYDR01314.5914 FVMGGELEYDRlight2+658.30301314.5914522.6541 
VNNDLGAGGGTLDEIGR01656.8067 VNNDLGAGGGTLDEIGRlight2+829.41061656.8067527.7873 
AGYDFGPVLGYGVLGAAR01781.9101 AGYDFGPVLGYGVLGAARlight2+891.96231781.9101529.6639