Borchers Lab - Double SIS-JPR

Multiplexed MRM-based Protein Quantitation Using Two Different Stable Isotope Labeled Peptides for Calibration

  • SpikeIn: No
Abstract
Precise and robust quantitation of the endogenous plasma proteome is a requirement for fundamental and biomedical research as well as for clinical applications. Targeted detection of peptides in a bottom-up strategy is the most common and precise mass spectrometry-based quantitation approach when combined with the use of stable isotope labeled peptides. However, when measuring protein in plasma, the unknown endogenous levels prevent the implementation of best calibration strategies since no blank matrix is available. Consequently, several alternative calibration strategies are employed by different laboratories. In this study, these methods were compared to a new approach using two different stable isotope-labeled standard (SIS) peptides for each endogenous peptide to be quantified, enabling an external calibration curve as well as the quality control samples to be prepared in pooled human plasma without interference from endogenous peptides. This strategy improves the analytical performance of the assay and enables the accuracy of the assay to be monitored, which can also facilitate method development and validation.
Created on 4/13/17, 9:47 AM
Clustergrammer Heatmap
Flag FileDownloadCreatedProteinsPeptidesPrecursorsTransitionsReplicatesCalibration Curves
SinglePointCal_Batch 2_2017-04-12_17-28-24.sky.zip2017-04-13131962102431
ReverseCurves_Batch 2_1overX_all STDs_2017-04-12_17-17-23.sky.zip2017-04-13131962104831
PBSCurve_Batch 2_1overX_all STDs_2017-04-12_17-14-22.sky.zip2017-04-13131962102431
BSACurve_Batch 2_1overX_all STDs_2017-04-12_17-13-07.sky.zip2017-04-13131962102431
SinglePointCal_Batch 1_2017-04-12_16-45-57.sky.zip2017-04-13131962042431
HumanCurve_Batch 2_1overX_all STDs_2017-04-12_16-53-47.sky.zip2017-04-13131962103531
ReverseCurves_Batch 1_1overX_all STDs_2017-04-12_16-43-39.sky.zip2017-04-13131962044831
PBSCurve_Batch 1_1overX_all STDs_2017-04-12_16-41-46.sky.zip2017-04-13131962042431
BSACurve_Batch 1_1overX_all STDs_2017-04-12_16-39-52.sky.zip2017-04-13131962042431
Batch 1_Double SIS_1overX_master_submit_2017-04-12_16-24-56.sky.zip2017-04-131319620410831
DimethylHuCurve_Batch 2_1overX_all STDs_2017-04-12_17-10-20.sky.zip2017-04-13131962102431
Batch 2_Double SIS_1overX_master_submit_2017-04-12_16-49-12.sky.zip2017-04-13131962109631
DimethylHuCurve_Batch 1_1overX_all STDs_2017-04-12_16-38-17.sky.zip2017-04-13131962042431
ChickenCurve_Batch 1_1overX_all STDs_2017-04-12_16-36-49.sky.zip2017-04-13131962042431
ChickenCurve_Batch 2_1overX_all STDs_2017-04-12_16-55-54.sky.zip2017-04-13131962092431
HumanCurve_Batch 1_1overX_all STDs_2017-04-12_16-34-51.sky.zip2017-04-13131962103631