GCP

GCP
PlateLabelCell LineLevel 1Level 2Level 3Level 4ConfigCreated
Plate85Drug Combinations (9 combinations) A549A549 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-11-15
Plate86Drug Combinations (9 combinations) PC3PC3 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-10-30
Plate89Drug Combinations (2 compounds) YAPCYAPC Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-10-23
Plate65Neuroactive DrugsAstrocyte Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-10-17
Plate34Kinase InhibitorsPC3 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-10-17
Plate87Drug Combinations (2 compounds) A549A549 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-10-16
Plate84APP Genetic Variants + DrugsNPC Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-10-16
Plate88Drug Combinations (2 compounds) PC3PC3 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-10-16
Plate59Cardiotoxic DrugsA375 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-09-26
Plate82Drug Combinations (2 compounds) MCF7MCF7 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-09-23
Plate63Cardiotoxic DrugsNPC Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-09-12
Plate81Drug Combinations (9 combinations) MCF7MCF7 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-09-11
Plate80Drug Combinations (2 compounds) A375A375 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-08-14
Plate79Drug Combinations (9 combinations) A375A375 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-08-14
Plate78Drug Combinations (2 compounds) A375A375 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-08-14
Plate71bDown Syndrome Cell LinesNPC Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-06-10
Plate71aDown Syndrome Cell LinesNPC Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-06-10
Plate76CDK inhibitorsPDX1258 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-04-29
Plate77CDK inhibitorsMCF10a Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-04-17
Plate75CDK inhibitorsHs578T Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-04-16
Plate74CDK inhibitorsMCF7 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-04-16
Plate73CDK inhibitorsBT549 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2019-04-16
Plate66Kinase InhibitorsAstrocyte Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-09-05
Plate67Cardiotoxic DrugsAstrocyte Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-07-18
Plate22Neuroactive DrugsA375 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-15
Plate35Targeted Oncology Drugs - Dose ResponseMCF10A Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-15
Plate29Kinase InhibitorsMCF7 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-15
PlateCPTACSEE NOTE BC TumorsBasal,Her2,LumA,LumB,Normal,xx Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-10
Plate57Cardioactive, Cardiotoxic, and Epigenetic DrugsHUVEC Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-10
Plate16Epigenetic DrugsNPC Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-09
Plate46Haggarty Collab Plate 2170,177 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-09
Plate45Haggarty Collab Plate 1179,215 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-09
Plate31Neuroactive DrugsYAPC Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-07
Plate24Neuroactive DrugsPC3 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-07
Plate30Epigenetic DrugsYAPC Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-07
Plate25Neuroactive DrugsA549 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-07
Plate32Kinase InhibitorsYAPC Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-07
Plate20Neuroactive DrugsNPC Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-07
Plate39Cardioactive, Cardiotoxic, and Epigenetic DrugsHAoSMC Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-07
Plate33Kinase InhibitorsA549 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-07
Plate38Cardioactive, Cardiotoxic, and Epigenetic DrugsHUVEC Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-07
Plate28Kinase InhibitorsA375 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-07
Plate27Kinase InhibitorsNPC Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-07
Plate19Epigenetic DrugsA549 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-07
Plate23Neuroactive DrugsMCF7 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-07
Plate18Epigenetic DrugsPC3 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-07
Plate17Epigenetic DrugsA375 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-07
Plate15Epigenetic DrugsMCF7 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-05-02
Plate64Epigenetic DrugsAstrocyte Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-04-20
Plate62Cardiotoxic DrugsYAPC Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-04-20
Plate60Cardiotoxic DrugsMCF7 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-04-20
Plate61Cardiotoxic DrugsPC3 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-01-10
PlateZWhitesell CollabA375_WI,BT-112,BT-320,BT-474,H838,IMR-32,MCF7_WI,MDA MB-468,NCI-H146,NCI-H187,NCI-H82,Ovcar-3/T1,Ovsaho/T1,SKMEL239,SUM-159/BC,T-47D Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-01-02
Plate58Cardiotoxic DrugsA549 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2018-01-02
Plate51Epigenetic Gene CRISPR Set 1A549-311 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2017-08-28
Plate53Epigenetic Gene CRISPR Set 3A549-311 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2017-08-17
Plate52Epigenetic Gene CRISPR Set 2A549-311 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2017-08-16
Plate48Epigenetic Gene CRISPR Set 3YAPC-311 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2017-04-26
Plate47Epigenetic Gene CRISPR Set 2YAPC-311 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2017-04-18
Plate44Epigenetic Gene CRISPR Set 1YAPC-311 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2017-04-18
Plate40Epigenetic Gene CRISPR Set 1A375-311 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2017-02-15
Plate42Epigenetic Gene CRISPR Set 3A375-311 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2016-11-18
Plate41Epigenetic Gene CRISPR Set 2A375-311 Skyline  GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   GCT  [ View in Morpheus  ]   CFG 2016-11-18

Quick Links (Levels 1,2,4 data):

ALL P100 DATA ALL GCP DATA 

 

Quick Level 4 Data Visualization (& Download):

Note: this is probably what you want! For rapid access to visualizations of data, use the table below.  Clicking on any link will lead to a visualization of data that we have collected. Each cell is a plate ID number followed by links to the data where available.  Links beginning with "P" point to P100 data, while links beginning with "G" point to GCP data.  The numbers after the leading character describe length of compound treatment before samples were harvested.

 MCF7PC3A549A375YAPCNPCAstrocytes
Epigenetically-active drugs15 P3/G2418 P3/G2419 P3/G2417 P3/G2430 P3/G2416 P3/G2464 P3/G24
Neurodevelopmental drugs23 P3/G2424 P3/G2425 P3/G2422 P3/G2431 P3/G2420 P3/G2465 P3/G24
Kinase/Pathway Inhibitors29 P3/P6/P24/G2434 P3/G2433 P3/G2428 P3/G2432 P3/G2427 P3/G2466 P3/G24
Cardiotoxic drugs60 P3/G2461 P3/G2458 P3/G2459 P3/G2462 P3/G2463 P3/G2467 P3/G24

Click here for more information on LINCS PCCSE Data Levels.

CUSTOM SUBSETTING OF

LEVEL 4 P100 DATA

CUSTOM SUBSETTING OF

LEVEL 4 GCP DATA

Clustergrammer Heatmap
FlagFileDownloadCreatedProteinsPeptidesPrecursorsTransitionsReplicates
LINCS_GCP_Plate41_annotated_minimized_2016-11-18_16-16-39.sky.zip2016-11-18606012050496
LINCS_GCP_Plate42_annotated_minimized_2016-11-18_16-17-34.sky.zip2016-11-18606012051296
LINCS_GCP_Plate40_annotated_minimized_2017-02-15_17-20-30.sky.zip2017-02-156060120512126
LINCS_GCP_Plate44_annotated_minimized_2017-04-18_16-53-17.sky.zip2017-04-18818116289096
LINCS_GCP_Plate47_annotated_minimized_2017-04-18_16-55-57.sky.zip2017-04-18818116285893
LINCS_GCP_Plate48_annotated_minimized_2017-04-26_16-29-09.sky.zip2017-04-26818116285496
LINCS_GCP_Plate52_annotated_minimized_2017-08-16_14-28-44.sky.zip2017-08-16818116287896
LINCS_GCP_Plate53_annotated_minimized_2017-08-17_14-57-14.sky.zip2017-08-17818116280896
LINCS_GCP_Plate51_annotated_minimized_2017-08-28_16-13-14.sky.zip2017-08-28818116287896
LINCS_GCP_Plate58_annotated_minimized_2018-01-02_14-26-56.sky.zip2018-01-02818116286896
LINCS_GCP_PlateZ_annotated_minimized_2018-01-02_16-37-11.sky.zip2018-01-02828216487296
LINCS_GCP_Plate61_annotated_minimized_2018-01-10_11-34-56.sky.zip2018-01-10818116276996
LINCS_GCP_Plate60_annotated_minimized_2018-04-20_14-36-43.sky.zip2018-04-20818116287696
LINCS_GCP_Plate62_annotated_minimized_2018-04-20_14-38-35.sky.zip2018-04-20818116286696
LINCS_GCP_Plate64_annotated_minimized_2018-04-20_14-41-08.sky.zip2018-04-20818116283289
LINCS_GCP_Plate15_annotated_minimized_2018-05-02_22-46-29.sky.zip2018-05-02606012053296
LINCS_GCP_Plate17_annotated_minimized_2018-05-07_14-10-50.sky.zip2018-05-07606012051696
LINCS_GCP_Plate18_annotated_minimized_2018-05-07_14-22-16.sky.zip2018-05-07606012050696
LINCS_GCP_Plate23_annotated_minimized_2018-05-07_14-31-53.sky.zip2018-05-07595911850296
LINCS_GCP_Plate19_annotated_minimized_2018-05-07_14-42-13.sky.zip2018-05-07606012052296
LINCS_GCP_Plate27_annotated_minimized_2018-05-07_14-51-21.sky.zip2018-05-07606012049296
LINCS_GCP_Plate28_annotated_minimized_2018-05-07_15-02-14.sky.zip2018-05-07606012050696
LINCS_GCP_Plate38_annotated_minimized_2018-05-07_15-11-59.sky.zip2018-05-07606012050096
LINCS_GCP_Plate33_annotated_minimized_2018-05-07_15-20-54.sky.zip2018-05-07606012050496
LINCS_GCP_Plate39_annotated_minimized_2018-05-07_15-33-08.sky.zip2018-05-07606012051896
LINCS_GCP_Plate20_annotated_minimized_2018-05-07_15-41-44.sky.zip2018-05-07606012051496
LINCS_GCP_Plate32_annotated_minimized_2018-05-07_15-51-20.sky.zip2018-05-07606012051696
LINCS_GCP_Plate25_annotated_minimized_2018-05-07_16-09-52.sky.zip2018-05-07616112252896
LINCS_GCP_Plate30_annotated_minimized_2018-05-07_16-32-39.sky.zip2018-05-07606012050696
LINCS_GCP_Plate24_annotated_minimized_2018-05-07_16-43-23.sky.zip2018-05-07595911848493
LINCS_GCP_Plate31_annotated_minimized_2018-05-07_16-53-24.sky.zip2018-05-07606012051896
LINCS_GCP_Plate45_annotated_minimized_2018-05-09_10-56-44.sky.zip2018-05-09818116289460
LINCS_GCP_Plate46_annotated_minimized_2018-05-09_11-06-31.sky.zip2018-05-09818116288060
LINCS_GCP_Plate16_annotated_minimized_2018-05-09_11-16-44.sky.zip2018-05-09595911851696
LINCS_GCP_Plate57_annotated_minimized_2018-05-10_10-18-17.sky.zip2018-05-10818116277793
LINCS_GCP_PlateCPTAC_annotated_minimized_2018-05-10_10-41-20.sky.zip2018-05-108181162872124
LINCS_GCP_Plate29_annotated_minimized_2018-05-15_13-51-04.sky.zip2018-05-15606012051695
LINCS_GCP_Plate35_annotated_minimized_2018-05-15_14-02-11.sky.zip2018-05-15606012052096
LINCS_GCP_Plate22_annotated_minimized_2018-05-15_14-16-43.sky.zip2018-05-15606012050693
LINCS_GCP_Plate67_annotated_minimized_2018-07-18_16-39-05.sky.zip2018-07-18818116291496
LINCS_GCP_Plate66_annotated_minimized_2018-09-05_11-44-04.sky.zip2018-09-05818116284896
LINCS_GCP_Plate73_annotated_minimized_2019-04-16_11-45-08.sky.zip2019-04-16818116289433
LINCS_GCP_Plate74_annotated_minimized_2019-04-16_13-21-11.sky.zip2019-04-16808016080533
LINCS_GCP_Plate75_annotated_minimized_2019-04-16_13-40-09.sky.zip2019-04-16818116291233
LINCS_GCP_Plate77_annotated_minimized_2019-04-17_09-22-00.sky.zip2019-04-17818116291233
LINCS_GCP_Plate76_annotated_minimized_2019-04-29_15-46-06.sky.zip2019-04-29818116287833
LINCS_GCP_Plate71a_annotated_minimized_2019-06-10_18-10-31.sky.zip2019-06-1081811628548
LINCS_GCP_Plate71b_annotated_minimized_2019-06-10_18-12-11.sky.zip2019-06-10818116283018
LINCS_GCP_Plate78_annotated_minimized_2019-08-14_12-00-49.sky.zip2019-08-14818116287696
LINCS_GCP_Plate79_annotated_minimized_2019-08-14_12-08-47.sky.zip2019-08-14818116287496
LINCS_GCP_Plate80_annotated_minimized_2019-08-14_12-13-02.sky.zip2019-08-14818116287596
LINCS_GCP_Plate81_annotated_minimized_2019-09-11_09-07-54.sky.zip2019-09-11818116286694
LINCS_GCP_Plate63_annotated_minimized_2019-09-12_11-57-23.sky.zip2019-09-12818116288296
LINCS_GCP_Plate82_annotated_minimized_2019-09-23_11-24-24.sky.zip2019-09-23818116287496
LINCS_GCP_Plate59_annotated_minimized_2019-09-26_16-33-28.sky.zip2019-09-26818116279095
LINCS_GCP_Plate88_annotated_minimized_2019-10-16_11-37-48.sky.zip2019-10-16818116288896
LINCS_GCP_Plate84_annotated_minimized_2019-10-16_15-41-56.sky.zip2019-10-16818116289860
LINCS_GCP_Plate87_annotated_minimized_2019-10-16_17-59-07.sky.zip2019-10-16818116291096
LINCS_GCP_Plate34_annotated_minimized_2019-10-17_13-06-51.sky.zip2019-10-17606012051896
LINCS_GCP_Plate65_annotated_minimized_2019-10-17_15-57-42.sky.zip2019-10-17818116282496
LINCS_GCP_Plate89_annotated_minimized_2019-10-23_11-24-15.sky.zip2019-10-23818116288691
LINCS_GCP_Plate86_annotated_minimized_2019-10-30_11-14-22.sky.zip2019-10-30818116289096
LINCS_GCP_Plate85_annotated_minimized_2019-11-15_15-03-53.sky.zip2019-11-15818116284996
Showing: all messages
Plate 65 re-release
karen 2019-10-17

Compound KN-93 had incorrect pert_dose in column metadata; corrected from 10 uM to 0.1 uM.

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Plate 34 re-release
karen 2019-10-17

Compound BYL719 had incorrect pert_dose in column metadata; corrected from 10 uM to 0.25 uM.

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Plate 59 re-release
karen 2019-10-03

Two raw files were incorrectly labeled in original release: TM20171002_GCP_Y4Q1_Plate_59_T4_A375_G-0059_F07_acq_02.raw was corrected to TM20171013_GCP_Y4Q1_Plate_59_T4_A375_G-0059_F07_acq_02.raw, and TM20171002_GCP_Y4Q1_Plate_59_T4_A375_G-0059_F08_acq_02.raw was corrected to TM20171013_GCP_Y4Q1_Plate_59_T4_A375_G-0059_F08_acq_02.raw.

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Plate 63 re-release
karen 2019-09-12

Compound Taxol had incorrect pert_dose in column metadata; corrected from 0 uM to 1 uM. Additionally, compound Trametinib had incorrect pert_dose in column metadata; corrected from 0 uM to 0.1 uM.

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GCP Plate 76 Filename inaccuracy with metadata
jmulla 2019-05-03

During acquisition, filenames did not align with proper sample positions. As a result, filenames in Skyline, gcts, and raw files differ from annotated metadata. Refer to metadata for correct annotation of sample.

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EMBARGO NOTE - CPTAC DATA
Jake Jaffe 2018-05-04
These data are embargoed until 7/1/2019 for publication.
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