Panorama: Repository Software for Targeted Proteomics Assays from Skyline 
Get started with Panorama today. Sign up to request a project on PanoramaWeb.Join the Panorama Partners Program to deploy your own Panorama server.
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Panorama was developed with the following goals for targeted proteomics investigation:

  • Help labs aggregate curated results
  • Store the complete Skyline document data model
  • Use previous experiments to inform new experiments
  • Make it easy to search and review a large body of experiments
  • Facilitate sharing results
  • Keep private data secure

Panorama was designed to integrate with existing Skyline workflows.  Users can publish their documents to a Panorama server directly from Skyline.  Data on the server can be organized in folders, and users can take advantage of LabKey Server's fine-grained permission controls to securely share data with collaborators, or make it publicly available.  You can browse through some of the example experiments below to explore the Panorama UI for published Skyline documents. 

PanoramaWeb is a public Panorama server hosted at the University of Washington where laboratories and organizations can own free projects.  You can request a project on this server to find out what Panorama has to offer, without having to set up and maintain your own LabKey Server.  You will be able to explore all the available features in Panorama, and be given administrative rights to your project so that you can set up folders and configure permissions.  The LabKey Server security infrastructure will allow you to keep your data as private as you want or release it publicly when you are ready.

Panorama can also be installed by laboratories and organizations on their own servers.  Look at Install Panorama to get started. 

Events

Skyline User Group Meeting at ASMS 2016
Review the presentations

Skyline User Group Meeting at ASMS 2015
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Skyline User Group Meeting at ASMS 2014
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Skyline User Group Meeting at ASMS 2013
Review the presentations

Recently Published

An Automated Pipeline to Monitor System Performance in Liquid Chromatography Tandem Mass Spectrometry Proteomic Experiments Michael S. Bereman, Joshua Beri, Vagisha Sharma, Cory Nathe, Josh Eckels, Brendan MacLean, Michael J. MacCoss. Journal of Proteome Research. 2016
[abstract] [pdf]

Managing Small Molecule Targeted Mass Spec Assays using Skyline and Panorama. Eckels J, Sharma V, Pratt B, Dunkley T, Wildsmith K, Anania V, Li Q, Nathe C, Patel B, MacCoss MJ, MacLean B. ASMS Poster. 2016
[pdf]

Performing quality control on targeted proteomics assays using Skyline and Panorama. Eckels J, Sharma V, Boss Y, Shi H, Dunkley T, Wildsmith K, Nathe C, Robinson A, Johnson R, Jaffe JD, MacCoss MJ, MacLean B. ASMS Poster. 2015
[pdf]

Panorama Public: A public repository for Skyline documents. Sharma V, Eckels J, Schilling B, Jaffe JD, MacCoss MJ, Brendan MacLean1 . ASMS Poster. 2015
[pdf]

Panorama: A Targeted Proteomics Knowledge Base. Sharma V, Eckels J, Taylor GK, Shulman NJ, Stergachis AB, Joyner SA, Yan P, Whiteaker JR, Halusa GN, Schilling B, Gibson BW, Colangelo CM, Paulovich AG, Carr SA, Jaffe JD, MacCoss MJ, MacLean B. Journal of Proteome Research. 2014
[abstract][pdf]

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Example Data


Related

Skyline
Learn more about Skyline software for large-scale proteomics studies.

LabKey Server
Learn more about LabKey Server open source tools for biomedical research from LabKey.


University of Washington