Results not being pushed to Panorama | pnlabsg | 2017-09-20 22:36:59 | |||||||||||||||||||||||||||||||||||||||||||
Dear Panorama developers, We have been using autoQC for just over a month, and found that our QC results not being pushed to Panorama for the past few days. I suspect a conflict in Skyline having to add a new file and remove a old file at the same time (a typical log with this problem is shown below). We can get around this by removing the latest file in the Skyline document, then restarting autoQC again. Our AutoQC version is 1.1.0.11134, and Skyline version is 3.7.0.11317 64 bit. Please advise on how to get automatic uploading working again. Best regards, Liyan [20-Sep-17 10:09:17 PM] Waiting for files... [21-Sep-17 11:13:39 AM] 20170921_RS_BSA_PRM_1.raw added to directory. [21-Sep-17 11:13:39 AM] 20170921_RS_BSA_PRM_1.raw is being acquired. Waiting... [21-Sep-17 11:53:39 AM] 20170921_RS_BSA_PRM_1.raw is ready [21-Sep-17 11:53:39 AM] Running SkylineRunner.exe with args: [21-Sep-17 11:53:39 AM] --in="D:\Skyline autoQC\HF_BSA_autoQC_refined.sky" --remove-before=22-Aug-17 --import-file="D:\MS_DATA_HF\20170921_RS_BSA_PRM_1.raw" --import-on-or-after=22-Aug-17 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Nanyang Tech U – PN Lab/QC/HF" --panorama-username="pnlabsg@gmail.com" [21-Sep-17 11:53:43 AM] Opening file... [21-Sep-17 11:53:44 AM] File HF_BSA_autoQC_refined.sky opened. [21-Sep-17 11:53:44 AM] [21-Sep-17 11:53:44 AM] Adding results... [21-Sep-17 11:53:44 AM] 1. D:\MS_DATA_HF\20170921_RS_BSA_PRM_1.raw [21-Sep-17 11:53:44 AM] [21-Sep-17 11:53:48 AM] [1] 29% [21-Sep-17 11:53:50 AM] [1] 45% [21-Sep-17 11:53:52 AM] [1] 56% [21-Sep-17 11:53:54 AM] [1] 64% [21-Sep-17 11:53:57 AM] [21-Sep-17 11:53:57 AM] Updating peak statistics [21-Sep-17 11:53:57 AM] Joining file D:\Skyline autoQC\20170921_RS_BSA_PRM_1_453968865.raw.skyd [21-Sep-17 11:53:57 AM] Removing results before 22-Aug-17... [21-Sep-17 11:53:57 AM] Removed D:\MS_DATA_HF\20170821_RS_BSA_PRM_1.raw. [21-Sep-17 11:53:57 AM] Saving file... [21-Sep-17 11:53:57 AM] File HF_BSA_autoQC_refined.sky saved. [21-Sep-17 12:01:23 PM] SkylineRunner.exe exited successfully. [21-Sep-17 12:01:23 PM] Waiting for files... |
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