2015-10-22 14:42:11,043 [INFO] AutoQCForm: Logging to directory: C:\bsatest\new
2015-10-22 14:42:11,044 [INFO] AutoQCForm: Watching folder C:\bsatest\new
2015-10-22 14:42:11,044 [INFO] AutoQCForm: Mass spec. files will be imported to C:\bsatest\new\bsaqep4.sky
2015-10-22 14:42:12,378 [INFO] AutoQCForm: Getting the acquisition date on the newest file imported into the Skyline document.
2015-10-22 14:42:12,394 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:42:12,394 [INFO] AutoQCForm:  --in="C:\bsatest\new\bsaqep4.sky" --report-conflict-resolution=overwrite --report-add="C:\Users\brettsp\AppData\Local\Apps\2.0\BBH998N6.EYK\TYHEQMG8.HC0\auto..tion_e4141a2a22107248_0001.0000_b1a9f529fe838138\FileAcquisitionTime.skyr" --report-name="AcquisitionTimes" --report-file="C:\bsatest\new\AcquisitionTimes.csv"
2015-10-22 14:42:14,266 [INFO] AutoQCForm: The name 'AcquisitionTimes' already exists.
2015-10-22 14:42:14,266 [INFO] AutoQCForm: Resolving conflicts by overwriting.
2015-10-22 14:42:14,361 [INFO] AutoQCForm: Success! Imported Reports from FileAcquisitionTime
2015-10-22 14:42:14,377 [INFO] AutoQCForm: Opening file...
2015-10-22 14:42:15,009 [INFO] AutoQCForm: File bsaqep4.sky opened.
2015-10-22 14:42:15,697 [INFO] AutoQCForm: Exporting report AcquisitionTimes...
2015-10-22 14:42:15,807 [INFO] AutoQCForm: Report AcquisitionTimes exported successfully to C:\bsatest\new\AcquisitionTimes.csv.
2015-10-22 14:42:15,807 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:42:15,823 [INFO] AutoQCForm: The Skyline document does not have any imported results.
2015-10-22 14:42:15,839 [INFO] AutoQCForm: Importing existing files...
2015-10-22 14:42:15,839 [INFO] AutoQCForm: No existing files found.
2015-10-22 14:42:15,839 [INFO] AutoQCForm: Importing new files...
2015-10-22 14:42:15,854 [INFO] AutoQCForm: Waiting for files...
2015-10-22 14:42:30,134 [INFO] AutoQCForm: Stopping AutoQC...
2015-10-22 14:42:30,150 [INFO] AutoQCForm: AutoQC is waiting for background processes to finish
2015-10-22 14:42:30,855 [INFO] AutoQCForm: Finished importing files.
2015-10-22 14:42:30,886 [INFO] AutoQCForm: AutoQC is stopped
2015-10-22 14:42:44,893 [INFO] AutoQCForm: Logging to directory: C:\bsatest\new
2015-10-22 14:42:44,893 [INFO] AutoQCForm: Watching folder C:\bsatest\qep1
2015-10-22 14:42:44,908 [INFO] AutoQCForm: Mass spec. files will be imported to C:\bsatest\new\bsaqep4.sky
2015-10-22 14:42:46,080 [INFO] AutoQCForm: Getting the acquisition date on the newest file imported into the Skyline document.
2015-10-22 14:42:46,080 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:42:46,080 [INFO] AutoQCForm:  --in="C:\bsatest\new\bsaqep4.sky" --report-conflict-resolution=overwrite --report-add="C:\Users\brettsp\AppData\Local\Apps\2.0\BBH998N6.EYK\TYHEQMG8.HC0\auto..tion_e4141a2a22107248_0001.0000_b1a9f529fe838138\FileAcquisitionTime.skyr" --report-name="AcquisitionTimes" --report-file="C:\bsatest\new\AcquisitionTimes.csv"
2015-10-22 14:42:47,954 [INFO] AutoQCForm: The name 'AcquisitionTimes' already exists.
2015-10-22 14:42:47,954 [INFO] AutoQCForm: Resolving conflicts by overwriting.
2015-10-22 14:42:48,048 [INFO] AutoQCForm: Success! Imported Reports from FileAcquisitionTime
2015-10-22 14:42:48,064 [INFO] AutoQCForm: Opening file...
2015-10-22 14:42:48,703 [INFO] AutoQCForm: File bsaqep4.sky opened.
2015-10-22 14:42:49,376 [INFO] AutoQCForm: Exporting report AcquisitionTimes...
2015-10-22 14:42:49,490 [INFO] AutoQCForm: Report AcquisitionTimes exported successfully to C:\bsatest\new\AcquisitionTimes.csv.
2015-10-22 14:42:49,506 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:42:49,506 [INFO] AutoQCForm: The Skyline document does not have any imported results.
2015-10-22 14:42:49,521 [INFO] AutoQCForm: Importing existing files...
2015-10-22 14:42:49,521 [INFO] AutoQCForm: Existing files found: 40
2015-10-22 14:42:49,631 [INFO] AutoQCForm: File qeP_20150924_BSA3.raw is ready
2015-10-22 14:42:49,631 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:42:49,631 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:42:49,646 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA3.raw" --save

2015-10-22 14:42:50,022 [INFO] AutoQCForm: Opening file...
2015-10-22 14:42:52,015 [INFO] AutoQCForm: File bsaqep4.sky opened.
2015-10-22 14:42:52,030 [INFO] AutoQCForm: Adding results...
2015-10-22 14:42:54,201 [ERROR] AutoQCForm: ERROR: Error: Failed importing results file 'C:\bsatest\qep1\qeP_20150924_BSA3.raw'.
2015-10-22 14:42:54,201 [INFO] AutoQCForm: An item with the same key has already been added.
2015-10-22 14:42:54,216 [ERROR] AutoQCForm: ERROR: Error: Failed importing the results file C:\bsatest\qep1\qeP_20150924_BSA3.raw.
2015-10-22 14:42:54,216 [INFO] AutoQCForm: Failed importing results file 'C:\bsatest\qep1\qeP_20150924_BSA3.raw'.
2015-10-22 14:42:54,232 [INFO] AutoQCForm: An item with the same key has already been added.
2015-10-22 14:42:54,232 [ERROR] AutoQCForm: ERROR: SkylineRunner.exe returned an error. Trying again...
2015-10-22 14:42:54,594 [INFO] AutoQCForm: Opening file...
2015-10-22 14:42:56,564 [INFO] AutoQCForm: File bsaqep4.sky opened.
2015-10-22 14:42:56,580 [INFO] AutoQCForm: Adding results...
2015-10-22 14:42:58,715 [ERROR] AutoQCForm: ERROR: Error: Failed importing results file 'C:\bsatest\qep1\qeP_20150924_BSA3.raw'.
2015-10-22 14:42:58,715 [INFO] AutoQCForm: An item with the same key has already been added.
2015-10-22 14:42:58,731 [ERROR] AutoQCForm: ERROR: Error: Failed importing the results file C:\bsatest\qep1\qeP_20150924_BSA3.raw.
2015-10-22 14:42:58,731 [INFO] AutoQCForm: Failed importing results file 'C:\bsatest\qep1\qeP_20150924_BSA3.raw'.
2015-10-22 14:42:58,746 [INFO] AutoQCForm: An item with the same key has already been added.
2015-10-22 14:42:58,746 [ERROR] AutoQCForm: ERROR: SkylineRunner.exe returned an error. Exceeded maximum try count.  Giving up...
2015-10-22 14:42:58,762 [INFO] AutoQCForm: Finished importing files.
2015-10-22 14:42:58,762 [INFO] AutoQCForm: AutoQC is stopped
2015-10-22 14:45:15,974 [INFO] AutoQCForm: Logging to directory: C:\bsatest\new
2015-10-22 14:45:15,989 [INFO] AutoQCForm: Watching folder C:\bsatest\qep1
2015-10-22 14:45:15,989 [INFO] AutoQCForm: Mass spec. files will be imported to C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:17,307 [INFO] AutoQCForm: Getting the acquisition date on the newest file imported into the Skyline document.
2015-10-22 14:45:17,322 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:17,322 [INFO] AutoQCForm:  --in="C:\bsatest\new\bsaqep4.sky" --report-conflict-resolution=overwrite --report-add="C:\Users\brettsp\AppData\Local\Apps\2.0\BBH998N6.EYK\TYHEQMG8.HC0\auto..tion_e4141a2a22107248_0001.0000_b1a9f529fe838138\FileAcquisitionTime.skyr" --report-name="AcquisitionTimes" --report-file="C:\bsatest\new\AcquisitionTimes.csv"
2015-10-22 14:45:19,204 [INFO] AutoQCForm: The name 'AcquisitionTimes' already exists.
2015-10-22 14:45:19,204 [INFO] AutoQCForm: Resolving conflicts by overwriting.
2015-10-22 14:45:19,299 [INFO] AutoQCForm: Success! Imported Reports from FileAcquisitionTime
2015-10-22 14:45:19,314 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:19,346 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:19,346 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:19,361 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:19,361 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:19,361 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:19,377 [INFO] AutoQCForm: The Skyline document does not have any imported results.
2015-10-22 14:45:19,377 [INFO] AutoQCForm: Importing existing files...
2015-10-22 14:45:19,377 [INFO] AutoQCForm: Existing files found: 40
2015-10-22 14:45:19,487 [INFO] AutoQCForm: File qeP_20150924_BSA3.raw is ready
2015-10-22 14:45:19,487 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:19,487 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:19,503 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA3.raw" --save

2015-10-22 14:45:19,837 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:21,203 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:21,203 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:21,218 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:21,218 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:21,218 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:21,347 [INFO] AutoQCForm: File qeP_20150924_BSA3_151005125427.raw is ready
2015-10-22 14:45:21,347 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:21,347 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:21,379 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA3_151005125427.raw" --save

2015-10-22 14:45:21,727 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:23,054 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:23,055 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:23,055 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:23,055 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:23,087 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:23,217 [INFO] AutoQCForm: File qeP_20150924_BSA1.raw is ready
2015-10-22 14:45:23,217 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:23,217 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:23,232 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA1.raw" --save

2015-10-22 14:45:23,566 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:24,948 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:24,948 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:24,963 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:24,963 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:24,979 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:25,107 [INFO] AutoQCForm: File qeP_20150924_BSA2.raw is ready
2015-10-22 14:45:25,107 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:25,107 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:25,122 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA2.raw" --save

2015-10-22 14:45:25,470 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:26,793 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:26,793 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:26,809 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:26,809 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:26,809 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:26,936 [INFO] AutoQCForm: File qeP_20150924_BSA3_151007125528.raw is ready
2015-10-22 14:45:26,936 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:26,936 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:26,936 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA3_151007125528.raw" --save

2015-10-22 14:45:27,316 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:28,626 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:28,642 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:28,642 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:28,643 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:28,643 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:28,769 [INFO] AutoQCForm: File qeP_20150924_BSA1_151008125306.raw is ready
2015-10-22 14:45:28,770 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:28,802 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:28,817 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA1_151008125306.raw" --save

2015-10-22 14:45:29,164 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:30,479 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:30,482 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:30,513 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:30,513 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:30,513 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:30,641 [INFO] AutoQCForm: File qeP_20150924_BSA2_151008133800.raw is ready
2015-10-22 14:45:30,656 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:30,656 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:30,672 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA2_151008133800.raw" --save

2015-10-22 14:45:31,012 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:32,364 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:32,379 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:32,379 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:32,379 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:32,395 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:32,521 [INFO] AutoQCForm: File qeP_20150924_BSA3_151008142257.raw is ready
2015-10-22 14:45:32,521 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:32,536 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:32,536 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA3_151008142257.raw" --save

2015-10-22 14:45:32,879 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:34,194 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:34,209 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:34,209 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:34,225 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:34,225 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:34,350 [INFO] AutoQCForm: File qeP_20150924_BSA3_151008204310.raw is ready
2015-10-22 14:45:34,365 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:34,365 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:34,365 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA3_151008204310.raw" --save

2015-10-22 14:45:34,724 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:36,037 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:36,052 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:36,068 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:36,068 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:36,068 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:36,208 [INFO] AutoQCForm: File qeP_20150924_BSA3_151009110306.raw is ready
2015-10-22 14:45:36,208 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:36,224 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:36,224 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA3_151009110306.raw" --save

2015-10-22 14:45:36,569 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:37,900 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:37,916 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:37,916 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:37,931 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:37,931 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:38,073 [INFO] AutoQCForm: File qeP_20151009_BSA1.raw is ready
2015-10-22 14:45:38,073 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:38,073 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:38,088 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151009_BSA1.raw" --save

2015-10-22 14:45:38,447 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:39,847 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:39,864 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:39,870 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:39,877 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:39,884 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:40,059 [INFO] AutoQCForm: File qeP_20151009_BSA2.raw is ready
2015-10-22 14:45:40,059 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:40,059 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:40,074 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151009_BSA2.raw" --save

2015-10-22 14:45:40,433 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:41,784 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:41,799 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:41,799 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:41,800 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:41,800 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:41,942 [INFO] AutoQCForm: File qeP_20151009_BSA3.raw is ready
2015-10-22 14:45:41,942 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:41,957 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:41,973 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151009_BSA3.raw" --save

2015-10-22 14:45:42,347 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:43,772 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:43,787 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:43,803 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:43,803 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:43,819 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:43,959 [INFO] AutoQCForm: File qeP_20150924_BSA1_151010092124.raw is ready
2015-10-22 14:45:43,959 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:43,975 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:43,975 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA1_151010092124.raw" --save

2015-10-22 14:45:44,427 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:46,048 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:46,064 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:46,064 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:46,080 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:46,080 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:46,282 [INFO] AutoQCForm: File qeP_20150924_BSA2_151010100722.raw is ready
2015-10-22 14:45:46,297 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:46,297 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:46,297 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA2_151010100722.raw" --save

2015-10-22 14:45:46,689 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:48,121 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:48,136 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:48,144 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:48,151 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:48,159 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:48,312 [INFO] AutoQCForm: File qeP_20150924_BSA3_151010105303.raw is ready
2015-10-22 14:45:48,318 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:48,325 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:48,331 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA3_151010105303.raw" --save

2015-10-22 14:45:48,776 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:50,385 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:50,401 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:50,417 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:50,417 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:50,417 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:50,559 [INFO] AutoQCForm: File qeP_20151013_BSA1.raw is ready
2015-10-22 14:45:50,559 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:50,559 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:50,575 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA1.raw" --save

2015-10-22 14:45:50,925 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:52,284 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:52,284 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:52,300 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:52,300 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:52,300 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:52,434 [INFO] AutoQCForm: File qeP_20151013_BSA2.raw is ready
2015-10-22 14:45:52,440 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:52,446 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:52,452 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA2.raw" --save

2015-10-22 14:45:52,875 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:54,251 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:54,267 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:54,267 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:54,283 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:54,298 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:54,392 [INFO] AutoQCForm: File qeP_20151013_BSA3.raw is ready
2015-10-22 14:45:54,392 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:54,392 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:54,407 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA3.raw" --save

2015-10-22 14:45:54,797 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:56,152 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:56,168 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:56,168 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:56,168 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:56,183 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:56,308 [INFO] AutoQCForm: File qeP_20151013_BSA1_151015141941.raw is ready
2015-10-22 14:45:56,324 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:56,324 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:56,339 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA1_151015141941.raw" --save

2015-10-22 14:45:56,700 [INFO] AutoQCForm: Opening file...
2015-10-22 14:45:58,312 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:45:58,328 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:45:58,343 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:45:58,343 [INFO] AutoQCForm: Exiting...
2015-10-22 14:45:58,343 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:45:58,484 [INFO] AutoQCForm: File qeP_20151013_BSA2_151015150349.raw is ready
2015-10-22 14:45:58,484 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:45:58,484 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:45:58,499 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA2_151015150349.raw" --save

2015-10-22 14:45:58,858 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:00,209 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:00,240 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:00,240 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:00,240 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:00,255 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:00,349 [INFO] AutoQCForm: File qeP_20151013_BSA3_151015154840.raw is ready
2015-10-22 14:46:00,349 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:00,365 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:00,380 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA3_151015154840.raw" --save

2015-10-22 14:46:00,723 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:02,070 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:02,085 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:02,085 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:02,101 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:02,117 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:02,241 [INFO] AutoQCForm: File qeP_20151013_BSA1_151016114956.raw is ready
2015-10-22 14:46:02,241 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:02,257 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:02,257 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA1_151016114956.raw" --save

2015-10-22 14:46:02,616 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:03,944 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:03,944 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:03,944 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:03,945 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:03,945 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:04,055 [INFO] AutoQCForm: File qeP_20151013_BSA2_151016123518.raw is ready
2015-10-22 14:46:04,055 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:04,055 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:04,071 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA2_151016123518.raw" --save

2015-10-22 14:46:04,419 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:05,770 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:05,787 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:05,787 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:05,787 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:05,821 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:05,930 [INFO] AutoQCForm: File qeP_20151013_BSA3_151016132023.raw is ready
2015-10-22 14:46:05,930 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:05,930 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:05,962 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA3_151016132023.raw" --save

2015-10-22 14:46:06,324 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:07,666 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:07,682 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:07,682 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:07,697 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:07,697 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:07,791 [INFO] AutoQCForm: File qeP_20151013_BSA1_151016161008.raw is ready
2015-10-22 14:46:07,791 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:07,791 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:07,806 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA1_151016161008.raw" --save

2015-10-22 14:46:08,185 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:09,482 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:09,498 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:09,513 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:09,513 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:09,529 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:09,607 [INFO] AutoQCForm: File qeP_20151013_BSA2_151016165521.raw is ready
2015-10-22 14:46:09,608 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:09,608 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:09,608 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA2_151016165521.raw" --save

2015-10-22 14:46:09,982 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:11,298 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:11,314 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:11,330 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:11,330 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:11,330 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:11,410 [INFO] AutoQCForm: File qeP_20151013_BSA3_151016174032.raw is ready
2015-10-22 14:46:11,426 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:11,442 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:11,442 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA3_151016174032.raw" --save

2015-10-22 14:46:11,802 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:13,092 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:13,123 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:13,123 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:13,139 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:13,139 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:13,248 [INFO] AutoQCForm: File qeP_20151013_BSA1_151018092131.raw is ready
2015-10-22 14:46:13,248 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:13,248 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:13,263 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA1_151018092131.raw" --save

2015-10-22 14:46:13,608 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:14,945 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:14,945 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:14,960 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:14,960 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:14,960 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:15,069 [INFO] AutoQCForm: File qeP_20151013_BSA2_151018100639.raw is ready
2015-10-22 14:46:15,069 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:15,069 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:15,085 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA2_151018100639.raw" --save

2015-10-22 14:46:15,446 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:16,746 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:16,761 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:16,761 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:16,777 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:16,792 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:16,870 [INFO] AutoQCForm: File qeP_20151013_BSA3_151018105146.raw is ready
2015-10-22 14:46:16,871 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:16,871 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:16,887 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA3_151018105146.raw" --save

2015-10-22 14:46:17,264 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:18,568 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:18,584 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:18,584 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:18,615 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:18,615 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:18,711 [INFO] AutoQCForm: File qeP_20151013_BSA1_151020122750.raw is ready
2015-10-22 14:46:18,711 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:18,727 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:18,727 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA1_151020122750.raw" --save

2015-10-22 14:46:19,087 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:20,436 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:20,436 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:20,452 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:20,452 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:20,468 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:20,546 [INFO] AutoQCForm: File qeP_20151013_BSA2_151020131210.raw is ready
2015-10-22 14:46:20,561 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:20,561 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:20,561 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA2_151020131210.raw" --save

2015-10-22 14:46:20,924 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:22,244 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:22,244 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:22,260 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:22,260 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:22,261 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:22,359 [INFO] AutoQCForm: File qeP_20151013_BSA3_151020135713.raw is ready
2015-10-22 14:46:22,374 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:22,374 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:22,374 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA3_151020135713.raw" --save

2015-10-22 14:46:22,737 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:24,025 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:24,040 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:24,056 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:24,071 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:24,071 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:24,165 [INFO] AutoQCForm: File qeP_20151013_BSA1_151020160434.raw is ready
2015-10-22 14:46:24,165 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:24,165 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:24,166 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA1_151020160434.raw" --save

2015-10-22 14:46:24,543 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:25,862 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:25,862 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:25,877 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:25,893 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:25,893 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:25,971 [INFO] AutoQCForm: File qeP_20151013_BSA2_151020164934.raw is ready
2015-10-22 14:46:25,986 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:26,002 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:26,002 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA2_151020164934.raw" --save

2015-10-22 14:46:26,361 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:27,663 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:27,694 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:27,694 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:27,694 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:27,709 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:27,809 [INFO] AutoQCForm: File qeP_20151013_BSA3_151020173439.raw is ready
2015-10-22 14:46:27,809 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:27,809 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:27,824 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA3_151020173439.raw" --save

2015-10-22 14:46:28,186 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:29,484 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:29,485 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:29,518 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:29,533 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:29,533 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:29,658 [INFO] AutoQCForm: File qeP_20151013_BSA1_151022115239.raw is ready
2015-10-22 14:46:29,658 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:29,674 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:29,674 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA1_151022115239.raw" --save

2015-10-22 14:46:30,025 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:31,347 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:31,378 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:31,378 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:31,378 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:31,393 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:31,487 [INFO] AutoQCForm: File qeP_20151013_BSA2_151022123733.raw is ready
2015-10-22 14:46:31,503 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:31,503 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:31,503 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA2_151022123733.raw" --save

2015-10-22 14:46:31,865 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:33,220 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:33,220 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:33,236 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:33,236 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:33,236 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:33,363 [INFO] AutoQCForm: File qeP_20151013_BSA3_151022132302.raw is ready
2015-10-22 14:46:33,379 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:46:33,395 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:46:33,395 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep4.sky" --import-file="C:\bsatest\qep1\qeP_20151013_BSA3_151022132302.raw" --save
 --panorama-server="http://panoramaweb.org" --panorama-folder="/UC DAVIS PROTEOMICS/QC/qep1" --panorama-username="bsphinney@ucdavis.edu" 
2015-10-22 14:46:42,109 [INFO] AutoQCForm: Opening file...
2015-10-22 14:46:43,464 [ERROR] AutoQCForm: ERROR: Error: There was an error opening the file C:\bsatest\new\bsaqep4.sky
2015-10-22 14:46:43,464 [INFO] AutoQCForm: The file contains an error on line 13 at column 8.
2015-10-22 14:46:43,479 [INFO] AutoQCForm: Specified libraries do not support the 'Spectrum count' peptide ranking.
2015-10-22 14:46:43,479 [INFO] AutoQCForm: Exiting...
2015-10-22 14:46:43,510 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:46:43,510 [INFO] AutoQCForm: Finished importing existing files...
2015-10-22 14:46:43,510 [INFO] AutoQCForm: Importing new files...
2015-10-22 14:46:43,526 [INFO] AutoQCForm: Waiting for files...
2015-10-22 14:49:09,443 [INFO] AutoQCForm: Stopping AutoQC...
2015-10-22 14:49:09,459 [INFO] AutoQCForm: AutoQC is waiting for background processes to finish
2015-10-22 14:49:13,723 [INFO] AutoQCForm: Finished importing files.
2015-10-22 14:49:13,754 [INFO] AutoQCForm: AutoQC is stopped
2015-10-22 14:50:00,197 [INFO] AutoQCForm: Logging to directory: C:\bsatest\new
2015-10-22 14:50:00,197 [INFO] AutoQCForm: Watching folder C:\bsatest\qep1
2015-10-22 14:50:00,197 [INFO] AutoQCForm: Mass spec. files will be imported to C:\bsatest\new\bsaqep5.sky
2015-10-22 14:50:01,463 [ERROR] AutoQCForm: ERROR: Skyline documents with QC results should have the"Integrate all" setting, under the "Settings" menu, checked. Please save the Skyline document with "Integrate all" checked and restart AutoQC.
2015-10-22 14:50:19,517 [INFO] AutoQCForm: Logging to directory: C:\bsatest\new
2015-10-22 14:50:19,532 [INFO] AutoQCForm: Watching folder C:\bsatest\qep1
2015-10-22 14:50:19,532 [INFO] AutoQCForm: Mass spec. files will be imported to C:\bsatest\new\bsaqep5.sky
2015-10-22 14:50:20,751 [INFO] AutoQCForm: Getting the acquisition date on the newest file imported into the Skyline document.
2015-10-22 14:50:20,767 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:50:20,782 [INFO] AutoQCForm:  --in="C:\bsatest\new\bsaqep5.sky" --report-conflict-resolution=overwrite --report-add="C:\Users\brettsp\AppData\Local\Apps\2.0\BBH998N6.EYK\TYHEQMG8.HC0\auto..tion_e4141a2a22107248_0001.0000_b1a9f529fe838138\FileAcquisitionTime.skyr" --report-name="AcquisitionTimes" --report-file="C:\bsatest\new\AcquisitionTimes.csv"
2015-10-22 14:50:22,657 [INFO] AutoQCForm: The name 'AcquisitionTimes' already exists.
2015-10-22 14:50:22,657 [INFO] AutoQCForm: Resolving conflicts by overwriting.
2015-10-22 14:50:22,751 [INFO] AutoQCForm: Success! Imported Reports from FileAcquisitionTime
2015-10-22 14:50:22,782 [INFO] AutoQCForm: Opening file...
2015-10-22 14:50:23,219 [INFO] AutoQCForm: File bsaqep5.sky opened.
2015-10-22 14:50:23,328 [INFO] AutoQCForm: Exporting report AcquisitionTimes...
2015-10-22 14:50:23,423 [INFO] AutoQCForm: Report AcquisitionTimes exported successfully to C:\bsatest\new\AcquisitionTimes.csv.
2015-10-22 14:50:23,438 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:50:23,438 [INFO] AutoQCForm: The Skyline document does not have any imported results.
2015-10-22 14:50:23,454 [INFO] AutoQCForm: Importing existing files...
2015-10-22 14:50:23,454 [INFO] AutoQCForm: Existing files found: 40
2015-10-22 14:50:23,547 [INFO] AutoQCForm: File qeP_20150924_BSA3.raw is ready
2015-10-22 14:50:23,563 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:50:23,563 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:50:23,563 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep5.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA3.raw" --save

2015-10-22 14:50:23,985 [INFO] AutoQCForm: Opening file...
2015-10-22 14:50:25,764 [INFO] AutoQCForm: File bsaqep5.sky opened.
2015-10-22 14:50:25,779 [INFO] AutoQCForm: Adding results...
2015-10-22 14:50:27,124 [ERROR] AutoQCForm: ERROR: Error: To extract chromatograms from qeP_20150924_BSA3 full-scan settings must be enabled.
2015-10-22 14:50:27,124 [INFO] AutoQCForm: Warning: Failed importing the results file C:\bsatest\qep1\qeP_20150924_BSA3.raw.  Ignoring...
2015-10-22 14:50:27,139 [INFO] AutoQCForm: To extract chromatograms from qeP_20150924_BSA3 full-scan settings must be enabled.
2015-10-22 14:50:27,139 [INFO] AutoQCForm: Saving file...
2015-10-22 14:50:27,280 [INFO] AutoQCForm: File bsaqep5.sky saved.
2015-10-22 14:50:27,295 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:50:27,373 [INFO] AutoQCForm: File qeP_20150924_BSA3_151005125427.raw is ready
2015-10-22 14:50:27,389 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:50:27,389 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:50:27,389 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep5.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA3_151005125427.raw" --save

2015-10-22 14:50:27,763 [INFO] AutoQCForm: Opening file...
2015-10-22 14:50:29,576 [INFO] AutoQCForm: File bsaqep5.sky opened.
2015-10-22 14:50:29,592 [INFO] AutoQCForm: Adding results...
2015-10-22 14:50:31,094 [ERROR] AutoQCForm: ERROR: Error: To extract chromatograms from qeP_20150924_BSA3_151005125427 full-scan settings must be enabled.
2015-10-22 14:50:31,110 [INFO] AutoQCForm: Warning: Failed importing the results file C:\bsatest\qep1\qeP_20150924_BSA3_151005125427.raw.  Ignoring...
2015-10-22 14:50:31,110 [INFO] AutoQCForm: To extract chromatograms from qeP_20150924_BSA3_151005125427 full-scan settings must be enabled.
2015-10-22 14:50:31,110 [INFO] AutoQCForm: Saving file...
2015-10-22 14:50:31,250 [INFO] AutoQCForm: File bsaqep5.sky saved.
2015-10-22 14:50:31,250 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:50:31,359 [INFO] AutoQCForm: File qeP_20150924_BSA1.raw is ready
2015-10-22 14:50:31,359 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:50:31,375 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:50:31,375 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep5.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA1.raw" --save

2015-10-22 14:50:31,749 [INFO] AutoQCForm: Opening file...
2015-10-22 14:50:33,526 [INFO] AutoQCForm: File bsaqep5.sky opened.
2015-10-22 14:50:33,542 [INFO] AutoQCForm: Adding results...
2015-10-22 14:50:34,839 [ERROR] AutoQCForm: ERROR: Error: To extract chromatograms from qeP_20150924_BSA1 full-scan settings must be enabled.
2015-10-22 14:50:34,839 [INFO] AutoQCForm: Warning: Failed importing the results file C:\bsatest\qep1\qeP_20150924_BSA1.raw.  Ignoring...
2015-10-22 14:50:34,854 [INFO] AutoQCForm: To extract chromatograms from qeP_20150924_BSA1 full-scan settings must be enabled.
2015-10-22 14:50:34,854 [INFO] AutoQCForm: Saving file...
2015-10-22 14:50:34,995 [INFO] AutoQCForm: File bsaqep5.sky saved.
2015-10-22 14:50:35,010 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:50:35,088 [INFO] AutoQCForm: File qeP_20150924_BSA2.raw is ready
2015-10-22 14:50:35,104 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:50:35,104 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:50:35,104 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep5.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA2.raw" --save

2015-10-22 14:50:35,478 [INFO] AutoQCForm: Opening file...
2015-10-22 14:50:35,494 [INFO] AutoQCForm: Stopping AutoQC...
2015-10-22 14:50:35,510 [INFO] AutoQCForm: AutoQC is waiting for background processes to finish
2015-10-22 14:50:35,510 [ERROR] AutoQCForm: ERROR: SkylineRunner.exe exited with error code -1.
2015-10-22 14:50:35,525 [ERROR] AutoQCForm: ERROR: SkylineRunner.exe returned an error. Exceeded maximum try count.  Giving up...
2015-10-22 14:50:35,525 [INFO] AutoQCForm: Finished importing files.
2015-10-22 14:50:35,525 [INFO] AutoQCForm: AutoQC is stopped
2015-10-22 14:51:44,615 [INFO] AutoQCForm: Logging to directory: C:\bsatest\new
2015-10-22 14:51:44,631 [INFO] AutoQCForm: Watching folder C:\bsatest\qep1
2015-10-22 14:51:44,647 [INFO] AutoQCForm: Mass spec. files will be imported to C:\bsatest\new\bsaqep5.sky
2015-10-22 14:51:45,914 [INFO] AutoQCForm: Getting the acquisition date on the newest file imported into the Skyline document.
2015-10-22 14:51:45,930 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:51:45,930 [INFO] AutoQCForm:  --in="C:\bsatest\new\bsaqep5.sky" --report-conflict-resolution=overwrite --report-add="C:\Users\brettsp\AppData\Local\Apps\2.0\BBH998N6.EYK\TYHEQMG8.HC0\auto..tion_e4141a2a22107248_0001.0000_b1a9f529fe838138\FileAcquisitionTime.skyr" --report-name="AcquisitionTimes" --report-file="C:\bsatest\new\AcquisitionTimes.csv"
2015-10-22 14:51:47,790 [INFO] AutoQCForm: The name 'AcquisitionTimes' already exists.
2015-10-22 14:51:47,790 [INFO] AutoQCForm: Resolving conflicts by overwriting.
2015-10-22 14:51:47,900 [INFO] AutoQCForm: Success! Imported Reports from FileAcquisitionTime
2015-10-22 14:51:47,932 [INFO] AutoQCForm: Opening file...
2015-10-22 14:51:48,540 [INFO] AutoQCForm: File bsaqep5.sky opened.
2015-10-22 14:51:48,651 [INFO] AutoQCForm: Exporting report AcquisitionTimes...
2015-10-22 14:51:48,762 [INFO] AutoQCForm: Report AcquisitionTimes exported successfully to C:\bsatest\new\AcquisitionTimes.csv.
2015-10-22 14:51:48,762 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 14:51:48,778 [INFO] AutoQCForm: The Skyline document does not have any imported results.
2015-10-22 14:51:48,778 [INFO] AutoQCForm: Importing existing files...
2015-10-22 14:51:48,778 [INFO] AutoQCForm: Existing files found: 40
2015-10-22 14:51:48,887 [INFO] AutoQCForm: File qeP_20150924_BSA3.raw is ready
2015-10-22 14:51:48,887 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 14:51:48,903 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 14:51:48,903 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep5.sky" --import-file="C:\bsatest\qep1\qeP_20150924_BSA3.raw" --save

2015-10-22 14:51:49,277 [INFO] AutoQCForm: Opening file...
2015-10-22 14:51:51,254 [INFO] AutoQCForm: File bsaqep5.sky opened.
2015-10-22 14:51:51,270 [INFO] AutoQCForm: Adding results...
2015-10-22 14:51:52,894 [ERROR] AutoQCForm: ERROR: Error: Failed importing results file 'C:\bsatest\qep1\qeP_20150924_BSA3.raw'.
2015-10-22 14:51:52,910 [INFO] AutoQCForm: An item with the same key has already been added.
2015-10-22 14:51:52,910 [ERROR] AutoQCForm: ERROR: Error: Failed importing the results file C:\bsatest\qep1\qeP_20150924_BSA3.raw.
2015-10-22 14:51:52,925 [INFO] AutoQCForm: Failed importing results file 'C:\bsatest\qep1\qeP_20150924_BSA3.raw'.
2015-10-22 14:51:52,925 [INFO] AutoQCForm: An item with the same key has already been added.
2015-10-22 14:51:52,925 [ERROR] AutoQCForm: ERROR: SkylineRunner.exe returned an error. Trying again...
2015-10-22 14:51:53,300 [INFO] AutoQCForm: Opening file...
2015-10-22 14:51:55,240 [INFO] AutoQCForm: File bsaqep5.sky opened.
2015-10-22 14:51:55,255 [INFO] AutoQCForm: Adding results...
2015-10-22 14:51:56,894 [ERROR] AutoQCForm: ERROR: Error: Failed importing results file 'C:\bsatest\qep1\qeP_20150924_BSA3.raw'.
2015-10-22 14:51:56,910 [INFO] AutoQCForm: An item with the same key has already been added.
2015-10-22 14:51:56,910 [ERROR] AutoQCForm: ERROR: Error: Failed importing the results file C:\bsatest\qep1\qeP_20150924_BSA3.raw.
2015-10-22 14:51:56,910 [INFO] AutoQCForm: Failed importing results file 'C:\bsatest\qep1\qeP_20150924_BSA3.raw'.
2015-10-22 14:51:56,925 [INFO] AutoQCForm: An item with the same key has already been added.
2015-10-22 14:51:56,925 [ERROR] AutoQCForm: ERROR: SkylineRunner.exe returned an error. Exceeded maximum try count.  Giving up...
2015-10-22 14:51:56,925 [INFO] AutoQCForm: Finished importing files.
2015-10-22 14:51:56,941 [INFO] AutoQCForm: AutoQC is stopped
2015-10-22 15:25:06,856 [INFO] AutoQCForm: Logging to directory: C:\bsatest\new
2015-10-22 15:25:06,856 [INFO] AutoQCForm: Watching folder C:\bsatest\qep11
2015-10-22 15:25:06,872 [INFO] AutoQCForm: Mass spec. files will be imported to C:\bsatest\new\bsaqep5.sky
2015-10-22 15:25:08,213 [INFO] AutoQCForm: Getting the acquisition date on the newest file imported into the Skyline document.
2015-10-22 15:25:08,213 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 15:25:08,213 [INFO] AutoQCForm:  --in="C:\bsatest\new\bsaqep5.sky" --report-conflict-resolution=overwrite --report-add="C:\Users\brettsp\AppData\Local\Apps\2.0\BBH998N6.EYK\TYHEQMG8.HC0\auto..tion_e4141a2a22107248_0001.0000_b1a9f529fe838138\FileAcquisitionTime.skyr" --report-name="AcquisitionTimes" --report-file="C:\bsatest\new\AcquisitionTimes.csv"
2015-10-22 15:25:10,095 [INFO] AutoQCForm: The name 'AcquisitionTimes' already exists.
2015-10-22 15:25:10,110 [INFO] AutoQCForm: Resolving conflicts by overwriting.
2015-10-22 15:25:10,204 [INFO] AutoQCForm: Success! Imported Reports from FileAcquisitionTime
2015-10-22 15:25:10,235 [INFO] AutoQCForm: Opening file...
2015-10-22 15:25:10,847 [INFO] AutoQCForm: File bsaqep5.sky opened.
2015-10-22 15:25:10,971 [INFO] AutoQCForm: Exporting report AcquisitionTimes...
2015-10-22 15:25:11,082 [INFO] AutoQCForm: Report AcquisitionTimes exported successfully to C:\bsatest\new\AcquisitionTimes.csv.
2015-10-22 15:25:11,082 [INFO] AutoQCForm: SkylineRunner.exe exited successfully.
2015-10-22 15:25:11,082 [INFO] AutoQCForm: The Skyline document does not have any imported results.
2015-10-22 15:25:11,097 [INFO] AutoQCForm: Importing existing files...
2015-10-22 15:25:11,097 [INFO] AutoQCForm: Existing files found: 40
2015-10-22 15:25:11,206 [INFO] AutoQCForm: File qeP_20150924_BSA3.raw is ready
2015-10-22 15:25:11,206 [INFO] AutoQCForm: Current results time window is 9/22/2015 TO 10/22/2015
2015-10-22 15:25:11,206 [INFO] AutoQCForm: Running SkylineRunner.exe with args: 
2015-10-22 15:25:11,222 [INFO] AutoQCForm: 
 --in="C:\bsatest\new\bsaqep5.sky" --import-file="C:\bsatest\qep11\qeP_20150924_BSA3.raw" --save

2015-10-22 15:25:11,596 [INFO] AutoQCForm: Opening file...
2015-10-22 15:25:13,532 [INFO] AutoQCForm: File bsaqep5.sky opened.
2015-10-22 15:25:13,547 [INFO] AutoQCForm: Adding results...
2015-10-22 15:25:15,176 [ERROR] AutoQCForm: ERROR: Error: Failed importing results file 'C:\bsatest\qep11\qeP_20150924_BSA3.raw'.
2015-10-22 15:25:15,192 [INFO] AutoQCForm: An item with the same key has already been added.
2015-10-22 15:25:15,192 [ERROR] AutoQCForm: ERROR: Error: Failed importing the results file C:\bsatest\qep11\qeP_20150924_BSA3.raw.
2015-10-22 15:25:15,192 [INFO] AutoQCForm: Failed importing results file 'C:\bsatest\qep11\qeP_20150924_BSA3.raw'.
2015-10-22 15:25:15,208 [INFO] AutoQCForm: An item with the same key has already been added.
2015-10-22 15:25:15,208 [ERROR] AutoQCForm: ERROR: SkylineRunner.exe returned an error. Trying again...
2015-10-22 15:25:15,584 [INFO] AutoQCForm: Opening file...
2015-10-22 15:25:17,523 [INFO] AutoQCForm: File bsaqep5.sky opened.
2015-10-22 15:25:17,539 [INFO] AutoQCForm: Adding results...
2015-10-22 15:25:19,208 [ERROR] AutoQCForm: ERROR: Error: Failed importing results file 'C:\bsatest\qep11\qeP_20150924_BSA3.raw'.
2015-10-22 15:25:19,208 [INFO] AutoQCForm: An item with the same key has already been added.
2015-10-22 15:25:19,224 [ERROR] AutoQCForm: ERROR: Error: Failed importing the results file C:\bsatest\qep11\qeP_20150924_BSA3.raw.
2015-10-22 15:25:19,224 [INFO] AutoQCForm: Failed importing results file 'C:\bsatest\qep11\qeP_20150924_BSA3.raw'.
2015-10-22 15:25:19,239 [INFO] AutoQCForm: An item with the same key has already been added.
2015-10-22 15:25:19,239 [ERROR] AutoQCForm: ERROR: SkylineRunner.exe returned an error. Exceeded maximum try count.  Giving up...
2015-10-22 15:25:19,255 [INFO] AutoQCForm: Finished importing files.
2015-10-22 15:25:19,255 [INFO] AutoQCForm: AutoQC is stopped