Study9p1_site_56A_Merged.sky.zip

Example Data
Protein Note/Annotations
 
sp|P09972|ALDOC_HUMANFructose-bisphosphate aldolase C OS=Homo sapiens GN=ALDOC PE=1 SV=2
Peptide Note/Annotations
Precursor Note/Annotations
ALQASALNAWR
01199.6411 
ALQASALNAWR
light2+600.82781199.6411330.486874.9174
ALQASALNAWR
01199.6411 
ALQASALNAWR
heavy2+605.83201209.6494330.486874.9174
AEVNGLAAQGK
01056.5564 
AEVNGLAAQGK
light2+529.28551056.5564327.911369.7019
AEVNGLAAQGK
01056.5564 
AEVNGLAAQGK
heavy2+533.29261064.5706327.911369.7019
ELSDIALR
0915.5025 
ELSDIALR
light2+458.7585915.5025325.372364.5605
ELSDIALR
0915.5025 
ELSDIALR
heavy2+463.7627925.5108325.372364.5605
TPSALAILENANVLAR
01651.9257 
TPSALAILENANVLAR
Interference in y8 and y9light2+826.97011651.9257338.627991.4031
TPSALAILENANVLAR
01651.9257 
TPSALAILENANVLAR
heavy2+831.97431661.9340338.627991.4031
QVLFSADDR
01049.5142 
QVLFSADDR
light2+525.76441049.5142327.784569.4452
QVLFSADDR
01049.5142 
QVLFSADDR
heavy2+530.76851059.5224327.784569.4452
sp|P04083|ANXA1_HUMANAnnexin A1 OS=Homo sapiens GN=ANXA1 PE=1 SV=2
Peptide Note/Annotations
Precursor Note/Annotations
ALYEAGER
0907.4399 
ALYEAGER
light2+454.7272907.4399325.227264.2666
ALYEAGER
0907.4399 
ALYEAGER
heavy2+459.7314917.4482325.227264.2666
GTDVNVFNTILTTR
01549.8100 
GTDVNVFNTILTTR
light2+775.91231549.8100336.789887.6810
GTDVNVFNTILTTR
01549.8100 
GTDVNVFNTILTTR
heavy2+780.91641559.8183336.789887.6810
GVDEATIIDILTK
01386.7606 
GVDEATIIDILTK
light2+694.38761386.7606333.855081.7379
GVDEATIIDILTK
01386.7606 
GVDEATIIDILTK
heavy2+698.39471394.7748333.855081.7379
AAYLQETGKPLDETLK
01775.9305 
AAYLQETGKPLDETLK
light3+592.98411775.9305329.848474.3455
AAYLQETGKPLDETLK
01775.9305 
AAYLQETGKPLDETLK
heavy3+595.65551783.9447329.848474.3455
TPAQFDADELR
01261.5939 
TPAQFDADELR
light2+631.80421261.5939331.602077.1755
TPAQFDADELR
01261.5939 
TPAQFDADELR
heavy2+636.80841271.6021331.602077.1755
sp|P09525|ANXA4_HUMANAnnexin A4 OS=Homo sapiens GN=ANXA4 PE=1 SV=4
Peptide Note/Annotations
Precursor Note/Annotations
VLVSLSAGGR
0957.5607 
VLVSLSAGGR
light2+479.7876957.5607326.129466.0935
VLVSLSAGGR
0957.5607 
VLVSLSAGGR
heavy2+484.7918967.5690326.129466.0935
GLGTDEDAIISVLAYR
No heavy peptide?01691.8730 
GLGTDEDAIISVLAYR
light3+564.96491691.8730328.324272.3029
GLGTDEDAIISVLAYR
No heavy peptide?01691.8730 
GLGTDEDAIISVLAYR
heavy3+568.30101701.8813328.324272.3029
DEGNYLDDALVR
01378.6365 
DEGNYLDDALVR
light2+690.32551378.6365333.708781.4417
DEGNYLDDALVR
01378.6365 
DEGNYLDDALVR
heavy2+695.32961388.6447333.708781.4417
GLGTDDNTLIR
Light is constant, heavy varies01173.5990 
GLGTDDNTLIR
light2+587.80681173.5990330.018073.9681
GLGTDDNTLIR
Light is constant, heavy varies01173.5990 
GLGTDDNTLIR
heavy2+592.81091183.6072330.018073.9681
GAGTDEGCLIEILASR
01660.8090 
GAGTDEGCLIEILASR
light2+831.41181660.8090338.787891.7269
GAGTDEGCLIEILASR
01660.8090 
GAGTDEGCLIEILASR
heavy2+836.41591670.8173338.787891.7269
sp|P20073|ANXA7_HUMANAnnexin A7 OS=Homo sapiens GN=ANXA7 PE=1 SV=3
Peptide Note/Annotations
Precursor Note/Annotations
LYQAGEGR
0892.4403 
LYQAGEGR
light2+447.2274892.4403324.957263.7199
LYQAGEGR
0892.4403 
LYQAGEGR
heavy2+452.2316902.4485324.957263.7199
SEIDLVQIK
01043.5863 
SEIDLVQIK
light2+522.80041043.5863327.677869.2291
SEIDLVQIK
01043.5863 
SEIDLVQIK
heavy2+526.80751051.6005327.677869.2291
GAGTDDSTLVR
01090.5255 
GAGTDDSTLVR
light2+546.27001090.5255328.522770.9401
GAGTDDSTLVR
01090.5255 
GAGTDDSTLVR
heavy2+551.27411100.5337328.522770.9401
EFSGYVESGLK
01214.5819 
EFSGYVESGLK
light2+608.29821214.5819330.755775.4619
EFSGYVESGLK
01214.5819 
EFSGYVESGLK
heavy2+612.30531222.5961330.755775.4619
GFGTDEQAIVDVVANR
01689.8322 
GFGTDEQAIVDVVANR
light3+564.28471689.8322328.287272.2533
GFGTDEQAIVDVVANR
01689.8322 
GFGTDEQAIVDVVANR
heavy3+567.62081699.8405328.287272.2533
sp|Q53G71|Q53G71_HUMANCalreticulin variant (Fragment) OS=Homo sapiens PE=2 SV=1
Peptide Note/Annotations
Precursor Note/Annotations
QIDNPDYK
0991.4611 
QIDNPDYK
light2+496.7378991.4611326.739667.3292
QIDNPDYK
0991.4611 
QIDNPDYK
heavy2+500.7449999.4753326.739667.3292
GLQTSQDAR
Very early eluting, 7 min, extreamely variable data,, consider dropping for this dataset0974.4781 
GLQTSQDAR
light2+488.2463974.4781326.433966.7102
GLQTSQDAR
Very early eluting, 7 min, extreamely variable data,, consider dropping for this dataset0974.4781 
GLQTSQDAR
heavy2+493.2505984.4864326.433966.7102
FYALSASFEPFSNK
01606.7668 
FYALSASFEPFSNK
light2+804.39071606.7668337.815189.7571
FYALSASFEPFSNK
01606.7668 
FYALSASFEPFSNK
heavy2+808.39781614.7810337.815189.7571
EQFLDGDGWTSR
01409.6212 
EQFLDGDGWTSR
light2+705.81791409.6212334.266482.5711
EQFLDGDGWTSR
01409.6212 
EQFLDGDGWTSR
heavy2+710.82201419.6294334.266482.5711
GQTLVVQFTVK
weak peptide - ratios off01218.6972 
GQTLVVQFTVK
light2+610.35591218.6972330.829875.6119
GQTLVVQFTVK
weak peptide - ratios off01218.6972 
GQTLVVQFTVK
heavy2+614.36301226.7114330.829875.6119
sp|O00299|CLIC1_HUMANChloride intracellular channel protein 1 OS=Homo sapiens GN=CLIC1 PE=1 SV=4
Peptide Note/Annotations
Precursor Note/Annotations
LHIVQVVCK
Precursor and transitions changed to improve signal01094.6270 
LHIVQVVCK
light2+548.32081094.6270328.596571.0896
LHIVQVVCK
Precursor and transitions changed to improve signal01094.6270 
LHIVQVVCK
heavy2+552.32791102.6412328.596571.0896
YLSNAYAR
0956.4716 
YLSNAYAR
light2+479.2431956.4716326.109866.0538
YLSNAYAR
0956.4716 
YLSNAYAR
heavy2+484.2472966.4798326.109866.0538
IEEFLEAVLCPPR
01571.8018 
IEEFLEAVLCPPR
light3+524.94121571.8018326.146969.3852
IEEFLEAVLCPPR
01571.8018 
IEEFLEAVLCPPR
heavy3+528.27731581.8100326.146969.3852
GVTFNVTTVDTK
01280.6612 
GVTFNVTTVDTK
light2+641.33791280.6612331.945277.8705
GVTFNVTTVDTK
01280.6612 
GVTFNVTTVDTK
heavy2+645.34501288.6754331.945277.8705
GFTIPEAFR
Relative abundance of the transitions of light QC sample doesn't match to the curve light and heavy and heavy of the QC01036.5342 
GFTIPEAFR
light2+519.27441036.5342327.550968.9721
GFTIPEAFR
Relative abundance of the transitions of light QC sample doesn't match to the curve light and heavy and heavy of the QC01036.5342 
GFTIPEAFR
heavy2+524.27851046.5424327.550968.9721
sp|P15311|EZRI_HUMANEzrin OS=Homo sapiens GN=EZR PE=1 SV=4
Peptide Note/Annotations
Precursor Note/Annotations
IQVWHAEHR
Relative abundance of the transitions of light QC sample doesn't match to the curve light and heavy and heavy of the QC01174.5996 
IQVWHAEHR
light3+392.54051174.5996318.944359.7332
IQVWHAEHR
Relative abundance of the transitions of light QC sample doesn't match to the curve light and heavy and heavy of the QC01174.5996 
IQVWHAEHR
heavy3+395.87661184.6078318.944359.7332
EDEVEEWQHR
01355.5742 
EDEVEEWQHR
light3+452.86531355.5742322.226064.1309
EDEVEEWQHR
01355.5742 
EDEVEEWQHR
heavy3+456.20141365.5825322.226064.1309
SGYLSSER
0897.4192 
SGYLSSER
light2+449.7169897.4192325.046863.9014
SGYLSSER
0897.4192 
SGYLSSER
heavy2+454.7210907.4275325.046863.9014
IALLEEAR
0913.5233 
IALLEEAR
light2+457.7689913.5233325.336764.4884
IALLEEAR
0913.5233 
IALLEEAR
heavy2+462.7731923.5316325.336764.4884
SQEQLAAELAEYTAK
01650.8101 
SQEQLAAELAEYTAK
light3+551.27731650.8101327.579671.3051
SQEQLAAELAEYTAK
01650.8101 
SQEQLAAELAEYTAK
heavy3+553.94871658.8243327.579671.3051
sp|Q16658|FSCN1_HUMANFascin OS=Homo sapiens GN=FSCN1 PE=1 SV=3
Peptide Note/Annotations
Precursor Note/Annotations
YLTAEAFGFK
01145.5757 
YLTAEAFGFK
light2+573.79511145.5757329.513672.9467
YLTAEAFGFK
01145.5757 
YLTAEAFGFK
heavy2+577.80221153.5899329.513672.9467
FLIVAHDDGR
01141.5880 
FLIVAHDDGR
light3+381.53661141.5880318.345758.9310
FLIVAHDDGR
01141.5880 
FLIVAHDDGR
heavy3+384.87271151.5963318.345758.9310
YLAPSGPSGTLK
01189.6343 
YLAPSGPSGTLK
light2+595.82441189.6343330.306774.5526
YLAPSGPSGTLK
01189.6343 
YLAPSGPSGTLK
heavy2+599.83151197.6485330.306774.5526
VTGTLDANR
0945.4880 
VTGTLDANR
light2+473.7513945.4880325.912065.6535
VTGTLDANR
0945.4880 
VTGTLDANR
heavy2+478.7554955.4962325.912065.6535
LSCFAQTVSPAEK
01436.6970 
LSCFAQTVSPAEK
light2+719.35581436.6970334.753883.5580
LSCFAQTVSPAEK
01436.6970 
LSCFAQTVSPAEK
heavy2+723.36291444.7112334.753883.5580
sp|P02792|FRIL_HUMANFerritin light chain OS=Homo sapiens GN=FTL PE=1 SV=2
Peptide Note/Annotations
Precursor Note/Annotations
LGGPEAGLGEYLFER
01606.7991 
LGGPEAGLGEYLFER
light2+804.40681606.7991337.815689.7583
LGGPEAGLGEYLFER
01606.7991 
LGGPEAGLGEYLFER
heavy2+807.41691612.8193337.815689.7583
KPAEDEWGK
01058.5033 
KPAEDEWGK
light2+530.25891058.5033327.946369.7729
KPAEDEWGK
01058.5033 
KPAEDEWGK
heavy2+533.26901064.5234327.946369.7729
sp|P39748|FEN1_HUMANFlap endonuclease 1 OS=Homo sapiens GN=FEN1 PE=1 SV=1
Peptide Note/Annotations
Precursor Note/Annotations
HLTASEAK
weak signal0855.4450 
HLTASEAK
light2+428.7298855.4450324.291362.3714
HLTASEAK
weak signal0855.4450 
HLTASEAK
heavy2+432.7369863.4592324.291362.3714
WSEPNEEELIK
01372.6511 
WSEPNEEELIK
light2+687.33281372.6511333.601081.2236
WSEPNEEELIK
01372.6511 
WSEPNEEELIK
heavy2+691.33991380.6653333.601081.2236
SIEEIVR
0844.4654 
SIEEIVR
light2+423.2400844.4654324.093661.9712
SIEEIVR
0844.4654 
SIEEIVR
heavy2+428.2441854.4737324.093661.9712
QLQQAQAAGAEQEVEK
01726.8486 
QLQQAQAAGAEQEVEK
light3+576.62351726.8486328.958473.1528
QLQQAQAAGAEQEVEK
01726.8486 
QLQQAQAAGAEQEVEK
heavy3+579.29491734.8628328.958473.1528
LIADVAPSAIR
01124.6554 
LIADVAPSAIR
light2+563.33501124.6554329.137172.1841
LIADVAPSAIR
01124.6554 
LIADVAPSAIR
heavy2+568.33911134.6636329.137172.1841