25 Oct 2021 14:09:31,496 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
25 Oct 2021 14:09:31,502 INFO : Starting to import Skyline document from Plasma_Lipid_Library_Negative_iRT_Test.sky.zip
25 Oct 2021 14:09:31,540 INFO : Expanding Negative_Plasma_Lipid_iRT.irtdb
25 Oct 2021 14:09:31,545 INFO : Expanding Plasma_Lipids_Negative.blib
25 Oct 2021 14:09:31,548 INFO : Expanding 1_Plasma_Lipid_Library_Negative_Test_3.skyd
25 Oct 2021 14:09:32,008 INFO : Expanding 1_Plasma_Lipid_Library_Negative_Test_3.sky.view
25 Oct 2021 14:09:32,010 INFO : Expanding 1_Plasma_Lipid_Library_Negative_Test_3.sky
25 Oct 2021 14:09:32,042 INFO : Expanding 1_Plasma_Lipid_Library_Negative_Test_3.skyl
25 Oct 2021 14:09:32,333 DEBUG: Starting to load chromatogram headers
25 Oct 2021 14:09:32,337 DEBUG: Done loading chromatogram headers
25 Oct 2021 14:09:32,350 INFO : Attempting to calculate iRT regression line from shared peptides.
25 Oct 2021 14:09:32,616 ERROR: Import failed
org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1725) for this folder: /home/Example Data/Lipidomics Chromatogram Library
Standards:
1) #$#AC(10:0)$C17H33NO4$ 1.9539925233402755E-14
2) #$#AC(18:2)$C25H45NO4$ 11.562373978085336
3) #$#AC(18:1)$C25H47NO4$ 15.32031023263773
4) #$#AC(18:0)$C25H49NO4$ 20.61919360632446
5) #$#SM(d16:1/14:0)$C35H71N2O6P$ 40.26783840667422
6) #$#SM(d16:1/18:3)$C39H73N2O6P$ 49.775351137340316
7) #$#SM(d17:1/16:0)$C38H77N2O6P$ 54.52464588714677
8) #$#PC(14:0_16:0)$C38H76NO8P$ 58.267717335383146
9) #$#PC(O-16:0/18:3);PC(P-16:0/18:2)$C42H80NO7P$ 64.38543615852277
10) #$#PC(18:0_22:6)$C48H84NO8P$ 65.53297009835387
11) #$#SM(d18:1/18:0)$C41H83N2O6P$ 66.99732126815218
12) #$#PC(18:0_20:3)$C46H86NO8P$ 69.81076819932642
13) #$#PC(P-18:0/16:0)$C42H84NO7P$ 70.9568165090775
14) #$#DG(18:1_18:2)$C39H70O5$ 73.84389474482882
15) #$#DG(18:1/18:1)$C39H72O5$ 77.66504871753855
16) #$#TG(60:13)$C63H96O6$ 87.17130830222112
17) #$#TG(16:1_16:1_18:2)$C53H94O6$ 91.04802408387809
18) #$#TG(54:4)$C57H102O6$ 94.98093297276057
19) #$#CE(18:2)$C45H76O2$ 98.32666263848591
20) #$#TG(18:0_18:1_20:1)$C59H110O6$ 99.99999999999997
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
1) #$#PC(14:0_16:0)$C38H76NO8P$ 66.66786527351755
2) #$#PC(O-16:0/18:3);PC(P-16:0/18:2)$C42H80NO7P$ 75.09955126680393
3) #$#PC(18:0_22:6)$C48H84NO8P$ 75.97800094758722
4) #$#PC(18:0_20:3)$C46H86NO8P$ 81.27656425660723
5) #$#PC(P-18:0/16:0)$C42H84NO7P$ 82.35035167893935
at org.labkey.targetedms.SkylineDocImporter.normalizeIrtImportAndReweighValues(SkylineDocImporter.java:1058)
at org.labkey.targetedms.SkylineDocImporter.insertiRTData(SkylineDocImporter.java:1013)
at org.labkey.targetedms.SkylineDocImporter.importSkylineDoc(SkylineDocImporter.java:345)
at org.labkey.targetedms.SkylineDocImporter.importRun(SkylineDocImporter.java:246)
at org.labkey.targetedms.pipeline.TargetedMSImportTask.run(TargetedMSImportTask.java:63)
at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:818)
at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1055)
at org.labkey.pipeline.mule.PipelineJobRunner.run(PipelineJobRunner.java:40)
at jdk.internal.reflect.GeneratedMethodAccessor1613.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:567)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invokeMethod(DynamicEntryPoint.java:312)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invoke(DynamicEntryPoint.java:259)
at org.mule.impl.DefaultLifecycleAdapter.intercept(DefaultLifecycleAdapter.java:193)
at org.mule.impl.InterceptorsInvoker.execute(InterceptorsInvoker.java:47)
at org.mule.impl.model.DefaultMuleProxy.run(DefaultMuleProxy.java:470)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$CallerRunsPolicy.rejectedExecution(ThreadPoolExecutor.java:1486)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:391)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.execute(ThreadPoolExecutor.java:865)
at org.mule.impl.work.ScheduleWorkExecutor.doExecute(ScheduleWorkExecutor.java:39)
at org.mule.impl.work.MuleWorkManager.executeWork(MuleWorkManager.java:277)
at org.mule.impl.work.MuleWorkManager.scheduleWork(MuleWorkManager.java:244)
at org.mule.impl.model.seda.SedaComponent.run(SedaComponent.java:483)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:675)
at java.base/java.lang.Thread.run(Thread.java:831)
25 Oct 2021 14:09:32,665 INFO : Failed to complete task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'
25 Oct 2021 14:09:32,669 ERROR: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1725) for this folder: /home/Example Data/Lipidomics Chromatogram Library
Standards:
1) #$#AC(10:0)$C17H33NO4$ 1.9539925233402755E-14
2) #$#AC(18:2)$C25H45NO4$ 11.562373978085336
3) #$#AC(18:1)$C25H47NO4$ 15.32031023263773
4) #$#AC(18:0)$C25H49NO4$ 20.61919360632446
5) #$#SM(d16:1/14:0)$C35H71N2O6P$ 40.26783840667422
6) #$#SM(d16:1/18:3)$C39H73N2O6P$ 49.775351137340316
7) #$#SM(d17:1/16:0)$C38H77N2O6P$ 54.52464588714677
8) #$#PC(14:0_16:0)$C38H76NO8P$ 58.267717335383146
9) #$#PC(O-16:0/18:3);PC(P-16:0/18:2)$C42H80NO7P$ 64.38543615852277
10) #$#PC(18:0_22:6)$C48H84NO8P$ 65.53297009835387
11) #$#SM(d18:1/18:0)$C41H83N2O6P$ 66.99732126815218
12) #$#PC(18:0_20:3)$C46H86NO8P$ 69.81076819932642
13) #$#PC(P-18:0/16:0)$C42H84NO7P$ 70.9568165090775
14) #$#DG(18:1_18:2)$C39H70O5$ 73.84389474482882
15) #$#DG(18:1/18:1)$C39H72O5$ 77.66504871753855
16) #$#TG(60:13)$C63H96O6$ 87.17130830222112
17) #$#TG(16:1_16:1_18:2)$C53H94O6$ 91.04802408387809
18) #$#TG(54:4)$C57H102O6$ 94.98093297276057
19) #$#CE(18:2)$C45H76O2$ 98.32666263848591
20) #$#TG(18:0_18:1_20:1)$C59H110O6$ 99.99999999999997
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
1) #$#PC(14:0_16:0)$C38H76NO8P$ 66.66786527351755
2) #$#PC(O-16:0/18:3);PC(P-16:0/18:2)$C42H80NO7P$ 75.09955126680393
3) #$#PC(18:0_22:6)$C48H84NO8P$ 75.97800094758722
4) #$#PC(18:0_20:3)$C46H86NO8P$ 81.27656425660723
5) #$#PC(P-18:0/16:0)$C42H84NO7P$ 82.35035167893935
org.labkey.api.pipeline.PipelineJobException: Unable to find sufficient correlation in standard or shared library peptides (iRT Scale Id = 1725) for this folder: /home/Example Data/Lipidomics Chromatogram Library
Standards:
1) #$#AC(10:0)$C17H33NO4$ 1.9539925233402755E-14
2) #$#AC(18:2)$C25H45NO4$ 11.562373978085336
3) #$#AC(18:1)$C25H47NO4$ 15.32031023263773
4) #$#AC(18:0)$C25H49NO4$ 20.61919360632446
5) #$#SM(d16:1/14:0)$C35H71N2O6P$ 40.26783840667422
6) #$#SM(d16:1/18:3)$C39H73N2O6P$ 49.775351137340316
7) #$#SM(d17:1/16:0)$C38H77N2O6P$ 54.52464588714677
8) #$#PC(14:0_16:0)$C38H76NO8P$ 58.267717335383146
9) #$#PC(O-16:0/18:3);PC(P-16:0/18:2)$C42H80NO7P$ 64.38543615852277
10) #$#PC(18:0_22:6)$C48H84NO8P$ 65.53297009835387
11) #$#SM(d18:1/18:0)$C41H83N2O6P$ 66.99732126815218
12) #$#PC(18:0_20:3)$C46H86NO8P$ 69.81076819932642
13) #$#PC(P-18:0/16:0)$C42H84NO7P$ 70.9568165090775
14) #$#DG(18:1_18:2)$C39H70O5$ 73.84389474482882
15) #$#DG(18:1/18:1)$C39H72O5$ 77.66504871753855
16) #$#TG(60:13)$C63H96O6$ 87.17130830222112
17) #$#TG(16:1_16:1_18:2)$C53H94O6$ 91.04802408387809
18) #$#TG(54:4)$C57H102O6$ 94.98093297276057
19) #$#CE(18:2)$C45H76O2$ 98.32666263848591
20) #$#TG(18:0_18:1_20:1)$C59H110O6$ 99.99999999999997
Standards in import:
NONE
NONE
NONE
NONE
NONE
NONE
NONE
1) #$#PC(14:0_16:0)$C38H76NO8P$ 66.66786527351755
2) #$#PC(O-16:0/18:3);PC(P-16:0/18:2)$C42H80NO7P$ 75.09955126680393
3) #$#PC(18:0_22:6)$C48H84NO8P$ 75.97800094758722
4) #$#PC(18:0_20:3)$C46H86NO8P$ 81.27656425660723
5) #$#PC(P-18:0/16:0)$C42H84NO7P$ 82.35035167893935
at org.labkey.targetedms.SkylineDocImporter.normalizeIrtImportAndReweighValues(SkylineDocImporter.java:1058)
at org.labkey.targetedms.SkylineDocImporter.insertiRTData(SkylineDocImporter.java:1013)
at org.labkey.targetedms.SkylineDocImporter.importSkylineDoc(SkylineDocImporter.java:345)
at org.labkey.targetedms.SkylineDocImporter.importRun(SkylineDocImporter.java:246)
at org.labkey.targetedms.pipeline.TargetedMSImportTask.run(TargetedMSImportTask.java:63)
at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:818)
at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1055)
at org.labkey.pipeline.mule.PipelineJobRunner.run(PipelineJobRunner.java:40)
at jdk.internal.reflect.GeneratedMethodAccessor1613.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:567)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invokeMethod(DynamicEntryPoint.java:312)
at org.mule.impl.model.resolvers.DynamicEntryPoint.invoke(DynamicEntryPoint.java:259)
at org.mule.impl.DefaultLifecycleAdapter.intercept(DefaultLifecycleAdapter.java:193)
at org.mule.impl.InterceptorsInvoker.execute(InterceptorsInvoker.java:47)
at org.mule.impl.model.DefaultMuleProxy.run(DefaultMuleProxy.java:470)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$CallerRunsPolicy.rejectedExecution(ThreadPoolExecutor.java:1486)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:391)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.execute(ThreadPoolExecutor.java:865)
at org.mule.impl.work.ScheduleWorkExecutor.doExecute(ScheduleWorkExecutor.java:39)
at org.mule.impl.work.MuleWorkManager.executeWork(MuleWorkManager.java:277)
at org.mule.impl.work.MuleWorkManager.scheduleWork(MuleWorkManager.java:244)
at org.mule.impl.model.seda.SedaComponent.run(SedaComponent.java:483)
at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:675)
at java.base/java.lang.Thread.run(Thread.java:831)