UCSF-MSF - Axonal injury

 

The following Skyline document accompanies our publication 

 

Intra-axonal translation of Khsrp mRNA slows axon regeneration by destabilizing localized mRNAs

 

Priyanka Patel, Courtney Buchanon, Amar N. Kar, Seung Joon Lee, Pabitra K. Sahoo, Anatoly Urisman, Juan Oses-Prieto, Michela Dell’Orco, Devon E. Cassidy, Sharmina Miller, Elizabeth Thames, Terika P. Smith, Matthew D. Zdradzinski, Alma L. Burlingame, Nora Perrone-Bizzozero, and Jeffery L. Twiss

 

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Clustergrammer Heatmap
 
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Twiss_PRM_unmod_24.sky.zip2020-07-20 05:19:40841841841,71333
Rat nerve axoplasm RBPs
Data License: CC BY 4.0
  • Organism: Rattus norvegicus
  • Instrument: Q Exactive Plus
  • SpikeIn: No
  • Keywords: PRM, axonal injury, axoplasm
  • Submitter: Anatoly Urisman
Abstract
This PRM dataset quantifies a set of RNA binding proteins (RBPs) in axoplasm from rat sciatic nerves following crush injury over a 28-day time course as compared to uninjured (naive) nerves.
Created on 7/20/20, 5:20 AM
Raw file Sample Condition BioReplicate
P20150711-01 Axo 3D 3C 3d crush 3
P20150711-02 Axo 7D 3C 7d crush 3
P20150711-04 Axo 14D 3C 14d crush 3
P20150711-05 Axo 21D 3C 21d crush 3
P20150711-06 Axo 28D 3C 28d crush 3
P20150711-08 Axo 3D 3N 3d naïve 3
P20150711-09 Axo 7D 3N 7d naïve 3
P20150711-10 Axo 14D 3N 14d naïve 3
P20150711-11 Axo 21D 3N 21d naïve 3
P20150711-12 Axo 28D 3N 28d naïve 3
P20150711-14 Axo 3D 2C 3d crush 2
P20150711-15 Axo 7D 2C 7d crush 2
P20150711-16 Axo 14D 2C 14d crush 2
P20150711-17 Axo 21D 2C 21d crush 2
P20150711-18 Axo 28D 2C 28d crush 2
P20150711-20 Axo 3D 2N 3d naïve 2
P20150711-21 Axo 7D 2N 7d naïve 2
P20150711-22 Axo 14D 2N 14d naïve 2
P20150711-23 Axo 21D 2N 21d naïve 2
P20150711-24 Axo 28D 2N 28d naïve 2
P20150711-26 Axo 3D 1C 3d crush 1
P20150711-27 Axo 7D 1C 7d crush 1
P20150711-28 Axo 14D 1C 14d crush 1
P20150711-29 Axo 21D 1C 21d crush 1
P20150711-30 Axo 28D 1C 28d crush 1
P20150711-32 Axo 3D 1N 3d naïve 1
P20150711-33 Axo 7D 1N 7d naïve 1
P20150711-35 Axo 14D 1N 14d naïve 1
P20150711-36 Axo 21D 1N 21d naïve 1
P20150711-37 Axo 28D 1N 28d naïve 1