[2/9/2018 2:58:15 PM] Opening file... [2/9/2018 2:58:16 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 2:58:16 PM] [2/9/2018 2:58:16 PM] Adding results... [2/9/2018 2:58:16 PM] 1. C:\Xcalibur\data\2018\EC2\q180205_EC2NY1268_02.raw [2/9/2018 2:58:16 PM] [2/9/2018 2:58:20 PM] [1] 11% [2/9/2018 2:58:22 PM] [1] 13% [2/9/2018 2:58:25 PM] [1] 15% [2/9/2018 2:58:27 PM] [1] 18% [2/9/2018 2:58:29 PM] [1] 21% [2/9/2018 2:58:32 PM] [1] 24% [2/9/2018 2:58:34 PM] [1] 27% [2/9/2018 2:58:36 PM] [1] 31% [2/9/2018 2:58:38 PM] [1] 34% [2/9/2018 2:58:41 PM] [1] 38% [2/9/2018 2:58:43 PM] [1] 41% [2/9/2018 2:58:46 PM] [1] 45% [2/9/2018 2:58:48 PM] [1] 48% [2/9/2018 2:58:50 PM] [1] 52% [2/9/2018 2:58:53 PM] [1] 55% [2/9/2018 2:58:55 PM] [1] 57% [2/9/2018 2:58:58 PM] [1] 60% [2/9/2018 2:59:00 PM] [1] 62% [2/9/2018 2:59:02 PM] [1] 64% [2/9/2018 2:59:06 PM] [1] 65% [2/9/2018 2:59:10 PM] [1] 66% [2/9/2018 2:59:14 PM] [1] 68% [2/9/2018 2:59:16 PM] [1] 70% [2/9/2018 2:59:17 PM] [2/9/2018 2:59:17 PM] Updating peak statistics [2/9/2018 2:59:17 PM] Joining file C:\Skyline\data\QC\q180205_EC2NY1268_02_1916799047.raw.skyd [2/9/2018 2:59:17 PM] Saving file... [2/9/2018 2:59:17 PM] File PRM_EC2_biognosys_template.sky saved. [2/9/2018 2:59:17 PM] SkylineDailyRunner.exe exited successfully. [2/9/2018 2:59:17 PM] q180205_EC2NY1268_03.raw is ready [2/9/2018 2:59:17 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 2:59:17 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --import-file="C:\Xcalibur\data\2018\EC2\q180205_EC2NY1268_03.raw" --import-on-or-after=2/2/2018 8:30:18 AM --save [2/9/2018 2:59:18 PM] Opening file... [2/9/2018 2:59:19 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 2:59:19 PM] [2/9/2018 2:59:19 PM] Adding results... [2/9/2018 2:59:19 PM] 1. C:\Xcalibur\data\2018\EC2\q180205_EC2NY1268_03.raw [2/9/2018 2:59:19 PM] [2/9/2018 2:59:25 PM] [1] 12% [2/9/2018 2:59:28 PM] [1] 15% [2/9/2018 2:59:30 PM] [1] 18% [2/9/2018 2:59:32 PM] [1] 21% [2/9/2018 2:59:34 PM] [1] 24% [2/9/2018 2:59:36 PM] [1] 27% [2/9/2018 2:59:39 PM] [1] 31% [2/9/2018 2:59:41 PM] [1] 34% [2/9/2018 2:59:43 PM] [1] 38% [2/9/2018 2:59:46 PM] [1] 41% [2/9/2018 2:59:48 PM] [1] 45% [2/9/2018 2:59:51 PM] [1] 48% [2/9/2018 2:59:53 PM] [1] 52% [2/9/2018 2:59:55 PM] [1] 55% [2/9/2018 2:59:57 PM] [1] 57% [2/9/2018 3:00:00 PM] [1] 60% [2/9/2018 3:00:02 PM] [1] 62% [2/9/2018 3:00:05 PM] [1] 64% [2/9/2018 3:00:09 PM] [1] 65% [2/9/2018 3:00:13 PM] [1] 66% [2/9/2018 3:00:15 PM] [1] 67% [2/9/2018 3:00:18 PM] [1] 68% [2/9/2018 3:00:20 PM] [1] 70% [2/9/2018 3:00:21 PM] [2/9/2018 3:00:21 PM] Updating peak statistics [2/9/2018 3:00:21 PM] Joining file C:\Skyline\data\QC\q180205_EC2NY1268_03_1916799047.raw.skyd [2/9/2018 3:00:21 PM] Saving file... [2/9/2018 3:00:21 PM] File PRM_EC2_biognosys_template.sky saved. [2/9/2018 3:00:21 PM] SkylineDailyRunner.exe exited successfully. [2/9/2018 3:00:21 PM] q180205_EC2NY1268_04.raw is ready [2/9/2018 3:00:21 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 3:00:21 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --import-file="C:\Xcalibur\data\2018\EC2\q180205_EC2NY1268_04.raw" --import-on-or-after=2/2/2018 8:30:18 AM --save [2/9/2018 3:00:22 PM] Opening file... [2/9/2018 3:00:23 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 3:00:23 PM] [2/9/2018 3:00:23 PM] Adding results... [2/9/2018 3:00:23 PM] 1. C:\Xcalibur\data\2018\EC2\q180205_EC2NY1268_04.raw [2/9/2018 3:00:23 PM] [2/9/2018 3:00:27 PM] [1] 11% [2/9/2018 3:00:30 PM] [1] 13% [2/9/2018 3:00:32 PM] [1] 15% [2/9/2018 3:00:34 PM] [1] 18% [2/9/2018 3:00:36 PM] [1] 21% [2/9/2018 3:00:39 PM] [1] 24% [2/9/2018 3:00:41 PM] [1] 27% [2/9/2018 3:00:43 PM] [1] 30% [2/9/2018 3:00:45 PM] [1] 33% [2/9/2018 3:00:47 PM] [1] 37% [2/9/2018 3:00:49 PM] [1] 40% [2/9/2018 3:00:52 PM] [1] 44% [2/9/2018 3:00:55 PM] [1] 48% [2/9/2018 3:00:57 PM] [1] 51% [2/9/2018 3:00:59 PM] [1] 54% [2/9/2018 3:01:01 PM] [1] 57% [2/9/2018 3:01:04 PM] [1] 60% [2/9/2018 3:01:06 PM] [1] 62% [2/9/2018 3:01:09 PM] [1] 64% [2/9/2018 3:01:12 PM] [1] 65% [2/9/2018 3:01:16 PM] [1] 66% [2/9/2018 3:01:20 PM] [1] 68% [2/9/2018 3:01:22 PM] [1] 70% [2/9/2018 3:01:23 PM] [2/9/2018 3:01:23 PM] Updating peak statistics [2/9/2018 3:01:23 PM] Joining file C:\Skyline\data\QC\q180205_EC2NY1268_04_1916799047.raw.skyd [2/9/2018 3:01:23 PM] Saving file... [2/9/2018 3:01:23 PM] File PRM_EC2_biognosys_template.sky saved. [2/9/2018 3:01:23 PM] SkylineDailyRunner.exe exited successfully. [2/9/2018 3:01:23 PM] q180205_EC2NY1268_05.raw is ready [2/9/2018 3:01:23 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 3:01:23 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --import-file="C:\Xcalibur\data\2018\EC2\q180205_EC2NY1268_05.raw" --import-on-or-after=2/2/2018 8:30:18 AM --save [2/9/2018 3:01:24 PM] Opening file... [2/9/2018 3:01:25 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 3:01:25 PM] [2/9/2018 3:01:25 PM] Adding results... [2/9/2018 3:01:25 PM] 1. C:\Xcalibur\data\2018\EC2\q180205_EC2NY1268_05.raw [2/9/2018 3:01:25 PM] [2/9/2018 3:01:31 PM] [1] 12% [2/9/2018 3:01:33 PM] [1] 15% [2/9/2018 3:01:36 PM] [1] 18% [2/9/2018 3:01:38 PM] [1] 21% [2/9/2018 3:01:40 PM] [1] 24% [2/9/2018 3:01:42 PM] [1] 27% [2/9/2018 3:01:45 PM] [1] 31% [2/9/2018 3:01:48 PM] [1] 35% [2/9/2018 3:01:50 PM] [1] 38% [2/9/2018 3:01:52 PM] [1] 42% [2/9/2018 3:01:55 PM] [1] 46% [2/9/2018 3:01:57 PM] [1] 50% [2/9/2018 3:02:00 PM] [1] 54% [2/9/2018 3:02:02 PM] [1] 57% [2/9/2018 3:02:05 PM] [1] 60% [2/9/2018 3:02:09 PM] [1] 63% [2/9/2018 3:02:12 PM] [1] 65% [2/9/2018 3:02:15 PM] [1] 66% [2/9/2018 3:02:19 PM] [1] 68% [2/9/2018 3:02:21 PM] [1] 70% [2/9/2018 3:02:22 PM] [2/9/2018 3:02:22 PM] Updating peak statistics [2/9/2018 3:02:22 PM] Joining file C:\Skyline\data\QC\q180205_EC2NY1268_05_1916799047.raw.skyd [2/9/2018 3:02:22 PM] Saving file... [2/9/2018 3:02:22 PM] File PRM_EC2_biognosys_template.sky saved. [2/9/2018 3:02:22 PM] SkylineDailyRunner.exe exited successfully. [2/9/2018 3:02:22 PM] q180205_EC2NY1268_06.raw is ready [2/9/2018 3:02:22 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 3:02:22 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --import-file="C:\Xcalibur\data\2018\EC2\q180205_EC2NY1268_06.raw" --import-on-or-after=2/2/2018 8:30:18 AM --save [2/9/2018 3:02:23 PM] Opening file... [2/9/2018 3:02:24 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 3:02:24 PM] [2/9/2018 3:02:24 PM] Adding results... [2/9/2018 3:02:24 PM] 1. C:\Xcalibur\data\2018\EC2\q180205_EC2NY1268_06.raw [2/9/2018 3:02:24 PM] [2/9/2018 3:02:30 PM] [1] 12% [2/9/2018 3:02:32 PM] [1] 15% [2/9/2018 3:02:34 PM] [1] 18% [2/9/2018 3:02:37 PM] [1] 21% [2/9/2018 3:02:39 PM] [1] 24% [2/9/2018 3:02:41 PM] [1] 27% [2/9/2018 3:02:43 PM] [1] 30% [2/9/2018 3:02:46 PM] [1] 33% [2/9/2018 3:02:48 PM] [1] 37% [2/9/2018 3:02:50 PM] [1] 40% [2/9/2018 3:02:53 PM] [1] 44% [2/9/2018 3:02:55 PM] [1] 47% [2/9/2018 3:02:57 PM] [1] 50% [2/9/2018 3:02:59 PM] [1] 53% [2/9/2018 3:03:01 PM] [1] 56% [2/9/2018 3:03:04 PM] [1] 59% [2/9/2018 3:03:07 PM] [1] 62% [2/9/2018 3:03:10 PM] [1] 64% [2/9/2018 3:03:13 PM] [1] 65% [2/9/2018 3:03:16 PM] [1] 66% [2/9/2018 3:03:20 PM] [1] 68% [2/9/2018 3:03:23 PM] [2/9/2018 3:03:23 PM] Updating peak statistics [2/9/2018 3:03:23 PM] Joining file C:\Skyline\data\QC\q180205_EC2NY1268_06_1916799047.raw.skyd [2/9/2018 3:03:23 PM] Saving file... [2/9/2018 3:03:23 PM] File PRM_EC2_biognosys_template.sky saved. [2/9/2018 3:03:23 PM] SkylineDailyRunner.exe exited successfully. [2/9/2018 3:03:24 PM] q180205_EC2NY1268_07.raw is ready [2/9/2018 3:03:24 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 3:03:24 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --import-file="C:\Xcalibur\data\2018\EC2\q180205_EC2NY1268_07.raw" --import-on-or-after=2/2/2018 8:30:18 AM --save [2/9/2018 3:03:25 PM] Opening file... [2/9/2018 3:03:25 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 3:03:26 PM] [2/9/2018 3:03:26 PM] Adding results... [2/9/2018 3:03:26 PM] 1. C:\Xcalibur\data\2018\EC2\q180205_EC2NY1268_07.raw [2/9/2018 3:03:26 PM] [2/9/2018 3:03:31 PM] [1] 12% [2/9/2018 3:03:34 PM] [1] 15% [2/9/2018 3:03:36 PM] [1] 18% [2/9/2018 3:03:38 PM] [1] 21% [2/9/2018 3:03:41 PM] [1] 24% [2/9/2018 3:03:43 PM] [1] 27% [2/9/2018 3:03:45 PM] [1] 30% [2/9/2018 3:03:47 PM] [1] 33% [2/9/2018 3:03:50 PM] [1] 37% [2/9/2018 3:03:52 PM] [1] 40% [2/9/2018 3:03:54 PM] [1] 44% [2/9/2018 3:03:57 PM] [1] 47% [2/9/2018 3:03:59 PM] [1] 51% [2/9/2018 3:04:02 PM] [1] 54% [2/9/2018 3:04:04 PM] [1] 57% [2/9/2018 3:04:07 PM] [1] 60% [2/9/2018 3:04:09 PM] [1] 62% [2/9/2018 3:04:12 PM] [1] 64% [2/9/2018 3:04:15 PM] [1] 65% [2/9/2018 3:04:19 PM] [1] 66% [2/9/2018 3:04:22 PM] [1] 68% [2/9/2018 3:04:24 PM] [1] 86% [2/9/2018 3:04:25 PM] [2/9/2018 3:04:25 PM] Updating peak statistics [2/9/2018 3:04:25 PM] Joining file C:\Skyline\data\QC\q180205_EC2NY1268_07_1916799047.raw.skyd [2/9/2018 3:04:25 PM] Saving file... [2/9/2018 3:04:25 PM] File PRM_EC2_biognosys_template.sky saved. [2/9/2018 3:04:25 PM] SkylineDailyRunner.exe exited successfully. [2/9/2018 3:04:25 PM] q180205_EC2NY1268_07_180209102022.raw is ready [2/9/2018 3:04:25 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 3:04:25 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --import-file="C:\Xcalibur\data\2018\EC2\q180205_EC2NY1268_07_180209102022.raw" --import-on-or-after=2/2/2018 8:30:18 AM --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 3:04:28 PM] Opening file... [2/9/2018 3:04:29 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 3:04:29 PM] [2/9/2018 3:04:29 PM] Adding results... [2/9/2018 3:04:29 PM] 1. C:\Xcalibur\data\2018\EC2\q180205_EC2NY1268_07_180209102022.raw [2/9/2018 3:04:29 PM] [2/9/2018 3:04:33 PM] [1] 15% [2/9/2018 3:04:35 PM] [1] 19% [2/9/2018 3:04:38 PM] [1] 23% [2/9/2018 3:04:40 PM] [1] 28% [2/9/2018 3:04:42 PM] [1] 33% [2/9/2018 3:04:44 PM] [1] 38% [2/9/2018 3:04:46 PM] [1] 44% [2/9/2018 3:04:48 PM] [1] 49% [2/9/2018 3:04:51 PM] [1] 55% [2/9/2018 3:04:53 PM] [1] 60% [2/9/2018 3:04:55 PM] [1] 66% [2/9/2018 3:04:57 PM] [2/9/2018 3:04:57 PM] Updating peak statistics [2/9/2018 3:04:57 PM] Joining file C:\Skyline\data\QC\q180205_EC2NY1268_07_180209102022_1916799047.raw.skyd [2/9/2018 3:04:57 PM] Saving file... [2/9/2018 3:04:58 PM] File PRM_EC2_biognosys_template.sky saved. [2/9/2018 3:05:02 PM] Uploaded 624.00 KB of 81.31 MB [2/9/2018 3:05:04 PM] 1% - Uploaded 1.84 MB of 81.31 MB [2/9/2018 3:05:06 PM] Uploaded 2.21 MB of 81.31 MB [2/9/2018 3:05:08 PM] Uploaded 2.84 MB of 81.31 MB [2/9/2018 3:05:10 PM] 2% - Uploaded 3.84 MB of 81.31 MB [2/9/2018 3:05:12 PM] 3% - Uploaded 5.02 MB of 81.31 MB [2/9/2018 3:05:14 PM] Uploaded 6.46 MB of 81.31 MB [2/9/2018 3:05:16 PM] 4% - Uploaded 8.09 MB of 81.31 MB [2/9/2018 3:05:18 PM] 6% - Uploaded 9.77 MB of 81.31 MB [2/9/2018 3:05:20 PM] 7% - Uploaded 11.46 MB of 81.31 MB [2/9/2018 3:05:22 PM] 8% - Uploaded 13.15 MB of 81.31 MB [2/9/2018 3:05:24 PM] 9% - Uploaded 14.84 MB of 81.31 MB [2/9/2018 3:05:26 PM] 10% - Uploaded 16.50 MB of 81.31 MB [2/9/2018 3:05:28 PM] 11% - Uploaded 18.16 MB of 81.31 MB [2/9/2018 3:05:30 PM] 12% - Uploaded 19.84 MB of 81.31 MB [2/9/2018 3:05:32 PM] 13% - Uploaded 21.52 MB of 81.31 MB [2/9/2018 3:05:34 PM] 14% - Uploaded 23.15 MB of 81.31 MB [2/9/2018 3:05:36 PM] 15% - Uploaded 24.84 MB of 81.31 MB [2/9/2018 3:05:38 PM] 16% - Uploaded 26.52 MB of 81.31 MB [2/9/2018 3:05:40 PM] 17% - Uploaded 28.21 MB of 81.31 MB [2/9/2018 3:05:42 PM] 18% - Uploaded 29.90 MB of 81.31 MB [2/9/2018 3:05:44 PM] 19% - Uploaded 31.59 MB of 81.31 MB [2/9/2018 3:05:46 PM] 20% - Uploaded 33.27 MB of 81.31 MB [2/9/2018 3:05:48 PM] 21% - Uploaded 34.96 MB of 81.31 MB [2/9/2018 3:05:50 PM] 22% - Uploaded 36.65 MB of 81.31 MB [2/9/2018 3:05:52 PM] 23% - Uploaded 38.34 MB of 81.31 MB [2/9/2018 3:05:54 PM] 24% - Uploaded 40.02 MB of 81.31 MB [2/9/2018 3:05:56 PM] 25% - Uploaded 41.71 MB of 81.31 MB [2/9/2018 3:05:58 PM] 26% - Uploaded 43.40 MB of 81.31 MB [2/9/2018 3:06:00 PM] 27% - Uploaded 45.09 MB of 81.31 MB [2/9/2018 3:06:02 PM] 28% - Uploaded 46.77 MB of 81.31 MB [2/9/2018 3:06:04 PM] 29% - Uploaded 48.46 MB of 81.31 MB [2/9/2018 3:06:06 PM] 30% - Uploaded 50.15 MB of 81.31 MB [2/9/2018 3:06:08 PM] 31% - Uploaded 51.84 MB of 81.31 MB [2/9/2018 3:06:10 PM] 32% - Uploaded 53.52 MB of 81.31 MB [2/9/2018 3:06:12 PM] 33% - Uploaded 55.21 MB of 81.31 MB [2/9/2018 3:06:14 PM] 34% - Uploaded 56.90 MB of 81.31 MB [2/9/2018 3:06:17 PM] 36% - Uploaded 58.59 MB of 81.31 MB [2/9/2018 3:06:19 PM] 37% - Uploaded 60.27 MB of 81.31 MB [2/9/2018 3:06:21 PM] 38% - Uploaded 61.96 MB of 81.31 MB [2/9/2018 3:06:23 PM] 39% - Uploaded 63.65 MB of 81.31 MB [2/9/2018 3:06:25 PM] 40% - Uploaded 65.34 MB of 81.31 MB [2/9/2018 3:06:27 PM] 41% - Uploaded 67.00 MB of 81.31 MB [2/9/2018 3:06:29 PM] 42% - Uploaded 68.65 MB of 81.31 MB [2/9/2018 3:06:31 PM] 43% - Uploaded 70.34 MB of 81.31 MB [2/9/2018 3:06:33 PM] 44% - Uploaded 72.02 MB of 81.31 MB [2/9/2018 3:06:35 PM] 45% - Uploaded 73.71 MB of 81.31 MB [2/9/2018 3:06:37 PM] 46% - Uploaded 75.40 MB of 81.31 MB [2/9/2018 3:06:39 PM] 47% - Uploaded 77.09 MB of 81.31 MB [2/9/2018 3:06:41 PM] 48% - Uploaded 78.77 MB of 81.31 MB [2/9/2018 3:06:43 PM] 49% - Uploaded 80.46 MB of 81.31 MB [2/9/2018 3:06:44 PM] 100% - Uploaded 81.31 MB of 81.31 MB [2/9/2018 3:06:45 PM] Unknown error attempting to publish to Panorama. [2/9/2018 3:06:45 PM] File was not uploaded to the server. Please try again, or if the problem persists, please contact your Panorama server administrator. [2/9/2018 3:06:45 PM] The remote server returned an error: (404) Not Found. [2/9/2018 3:06:45 PM] SkylineDailyRunner.exe exited successfully. [2/9/2018 3:06:45 PM] Finished importing existing files... [2/9/2018 3:06:45 PM] Importing new files... [2/9/2018 3:06:45 PM] Waiting for files... [2/9/2018 3:08:30 PM] q180201_EC2_01.raw added to directory. [2/9/2018 3:08:30 PM] q180201_EC2_01.raw is ready [2/9/2018 3:08:30 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 3:08:30 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180201_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 3:08:33 PM] Opening file... [2/9/2018 3:08:35 PM] PRM_EC2_biognosys_template.sky [2/9/2018 3:08:35 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 3:08:36 PM] [2/9/2018 3:08:36 PM] Adding results... [2/9/2018 3:08:36 PM] 1. C:\Xcalibur\data\2018\EC2\q180201_EC2_01.raw [2/9/2018 3:08:36 PM] [2/9/2018 3:08:36 PM] Error: Failed importing the results file Importing q180201_EC2_01.raw. [2/9/2018 3:08:36 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180201_EC2_01.raw'. [2/9/2018 3:08:37 PM] [read_file_header()] Unable to open file C:\Xcalibur\data\2018\EC2\q180201_EC2_01.raw (invalid permission or file locked) ---> System.Exception: [read_file_header()] Unable to open file C:\Xcalibur\data\2018\EC2\q180201_EC2_01.raw (invalid permission or file locked) [2/9/2018 3:08:37 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 3:08:37 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 3:08:37 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 3:08:37 PM] --- End of inner exception stack trace --- [2/9/2018 3:08:37 PM] [2/9/2018 3:08:37 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 3:08:37 PM] Adding q180201_EC2_01.raw to re-import queue. [2/9/2018 3:08:37 PM] Waiting for files... [2/9/2018 3:08:56 PM] q180201_EC2_01_180207121311.raw added to directory. [2/9/2018 3:08:57 PM] q180201_EC2_01_180207121311.raw is ready [2/9/2018 3:08:57 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 3:08:57 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180201_EC2_01_180207121311.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 3:08:59 PM] q180207_EC2_01.raw added to directory. [2/9/2018 3:09:00 PM] Opening file... [2/9/2018 3:09:02 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 3:09:03 PM] [2/9/2018 3:09:03 PM] Adding results... [2/9/2018 3:09:03 PM] 1. C:\Xcalibur\data\2018\EC2\q180201_EC2_01_180207121311.raw [2/9/2018 3:09:03 PM] [2/9/2018 3:09:06 PM] [1] 27% [2/9/2018 3:09:08 PM] [1] 43% [2/9/2018 3:09:11 PM] [1] 60% [2/9/2018 3:09:12 PM] [2/9/2018 3:09:12 PM] Updating peak statistics [2/9/2018 3:09:14 PM] Joining file C:\Skyline\data\QC\q180201_EC2_01_180207121311_1916799047.raw.skyd [2/9/2018 3:09:14 PM] Removing results before 1/10/2018... [2/9/2018 3:09:14 PM] Removed C:\Xcalibur\data\2018\EC2\q180108_EC2_pv_01.raw. [2/9/2018 3:09:14 PM] Removed C:\Xcalibur\data\2018\EC2\q180108_EC2_pv_02.raw. [2/9/2018 3:09:14 PM] Removed C:\Xcalibur\data\2018\EC2\q180108_EC2_pv_03.raw. [2/9/2018 3:09:14 PM] Removed C:\Xcalibur\data\2018\EC2\q180108_EC2_pv_04.raw. [2/9/2018 3:09:14 PM] Removed C:\Xcalibur\data\2018\EC2\q180108_EC2_pv_05.raw. [2/9/2018 3:09:14 PM] Removed C:\Xcalibur\data\2018\EC2\q180108_EC2_pv_06.raw. [2/9/2018 3:09:14 PM] Removed C:\Xcalibur\data\2018\EC2\q180108_EC2_pv_07.raw. [2/9/2018 3:09:14 PM] Removed C:\Xcalibur\data\2018\EC2\q180108_EC2_pv_08.raw. [2/9/2018 3:09:14 PM] Removed C:\Xcalibur\data\2018\EC2\q180108_EC2_pv_09.raw. [2/9/2018 3:09:14 PM] Removed C:\Xcalibur\data\2018\EC2\q180108_EC2_pv_10.raw. [2/9/2018 3:09:14 PM] Removed C:\Xcalibur\data\2018\EC2\q180108_EC2_pv_12.raw. [2/9/2018 3:09:14 PM] Removed C:\Xcalibur\data\2018\EC2\q180108_EC2_pv_11.raw. [2/9/2018 3:09:14 PM] Removed C:\Xcalibur\data\2018\EC2\q180109_EC2SZ1111c_01.raw. [2/9/2018 3:09:14 PM] Removed C:\Xcalibur\data\2018\EC2\q180109_EC2SZ1111c_02.raw. [2/9/2018 3:09:14 PM] Saving file... [2/9/2018 3:09:15 PM] File PRM_EC2_biognosys_template.sky saved. [2/9/2018 3:09:15 PM] Loading PRM_EC2_biognosys_template.skyd cache [2/9/2018 3:09:15 PM] Updating peak statistics [2/9/2018 3:09:18 PM] Uploaded 264.00 KB of 73.87 MB [2/9/2018 3:09:20 PM] Uploaded 752.00 KB of 73.87 MB [2/9/2018 3:09:22 PM] Uploaded 1.41 MB of 73.87 MB [2/9/2018 3:09:24 PM] 1% - Uploaded 2.35 MB of 73.87 MB [2/9/2018 3:09:26 PM] 2% - Uploaded 3.48 MB of 73.87 MB [2/9/2018 3:09:28 PM] 3% - Uploaded 4.85 MB of 73.87 MB [2/9/2018 3:09:30 PM] 4% - Uploaded 6.48 MB of 73.87 MB [2/9/2018 3:09:33 PM] 5% - Uploaded 8.16 MB of 73.87 MB [2/9/2018 3:09:35 PM] 6% - Uploaded 9.85 MB of 73.87 MB [2/9/2018 3:09:37 PM] 7% - Uploaded 11.54 MB of 73.87 MB [2/9/2018 3:09:39 PM] 8% - Uploaded 13.23 MB of 73.87 MB [2/9/2018 3:09:41 PM] 9% - Uploaded 14.60 MB of 73.87 MB [2/9/2018 3:09:43 PM] 11% - Uploaded 16.29 MB of 73.87 MB [2/9/2018 3:09:45 PM] 12% - Uploaded 17.98 MB of 73.87 MB [2/9/2018 3:09:47 PM] 13% - Uploaded 19.66 MB of 73.87 MB [2/9/2018 3:09:49 PM] 14% - Uploaded 21.35 MB of 73.87 MB [2/9/2018 3:09:51 PM] 15% - Uploaded 23.04 MB of 73.87 MB [2/9/2018 3:09:53 PM] 16% - Uploaded 24.66 MB of 73.87 MB [2/9/2018 3:09:55 PM] 17% - Uploaded 26.35 MB of 73.87 MB [2/9/2018 3:09:57 PM] 18% - Uploaded 28.04 MB of 73.87 MB [2/9/2018 3:09:59 PM] 20% - Uploaded 29.73 MB of 73.87 MB [2/9/2018 3:10:01 PM] 21% - Uploaded 31.41 MB of 73.87 MB [2/9/2018 3:10:03 PM] 22% - Uploaded 33.10 MB of 73.87 MB [2/9/2018 3:10:05 PM] 23% - Uploaded 34.73 MB of 73.87 MB [2/9/2018 3:10:07 PM] 24% - Uploaded 36.41 MB of 73.87 MB [2/9/2018 3:10:09 PM] 25% - Uploaded 38.10 MB of 73.87 MB [2/9/2018 3:10:11 PM] 26% - Uploaded 39.79 MB of 73.87 MB [2/9/2018 3:10:13 PM] 28% - Uploaded 41.48 MB of 73.87 MB [2/9/2018 3:10:15 PM] 29% - Uploaded 43.10 MB of 73.87 MB [2/9/2018 3:10:17 PM] 30% - Uploaded 44.79 MB of 73.87 MB [2/9/2018 3:10:19 PM] 31% - Uploaded 46.48 MB of 73.87 MB [2/9/2018 3:10:21 PM] 32% - Uploaded 48.16 MB of 73.87 MB [2/9/2018 3:10:23 PM] 33% - Uploaded 49.85 MB of 73.87 MB [2/9/2018 3:10:25 PM] 34% - Uploaded 51.54 MB of 73.87 MB [2/9/2018 3:10:27 PM] 36% - Uploaded 53.23 MB of 73.87 MB [2/9/2018 3:10:30 PM] 37% - Uploaded 54.91 MB of 73.87 MB [2/9/2018 3:10:32 PM] 38% - Uploaded 56.60 MB of 73.87 MB [2/9/2018 3:10:34 PM] 39% - Uploaded 58.29 MB of 73.87 MB [2/9/2018 3:10:36 PM] 40% - Uploaded 59.98 MB of 73.87 MB [2/9/2018 3:10:38 PM] 41% - Uploaded 61.66 MB of 73.87 MB [2/9/2018 3:10:40 PM] 42% - Uploaded 63.29 MB of 73.87 MB [2/9/2018 3:10:42 PM] 43% - Uploaded 64.98 MB of 73.87 MB [2/9/2018 3:10:44 PM] 45% - Uploaded 66.66 MB of 73.87 MB [2/9/2018 3:10:46 PM] 46% - Uploaded 68.35 MB of 73.87 MB [2/9/2018 3:10:48 PM] 47% - Uploaded 70.04 MB of 73.87 MB [2/9/2018 3:10:50 PM] 48% - Uploaded 71.73 MB of 73.87 MB [2/9/2018 3:10:52 PM] 49% - Uploaded 73.41 MB of 73.87 MB [2/9/2018 3:10:53 PM] 100% - Uploaded 73.87 MB of 73.87 MB [2/9/2018 3:10:53 PM] Unknown error attempting to publish to Panorama. [2/9/2018 3:10:53 PM] File was not uploaded to the server. Please try again, or if the problem persists, please contact your Panorama server administrator. [2/9/2018 3:10:53 PM] The remote server returned an error: (404) Not Found. [2/9/2018 3:10:53 PM] SkylineDailyRunner.exe exited successfully. [2/9/2018 3:10:53 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180201_EC2_01.raw. [2/9/2018 3:10:53 PM] q180201_EC2_01.raw is ready [2/9/2018 3:10:53 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 3:10:54 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180201_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 3:10:56 PM] Opening file... [2/9/2018 3:10:57 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 3:10:57 PM] [2/9/2018 3:10:57 PM] Adding results... [2/9/2018 3:10:57 PM] 1. C:\Xcalibur\data\2018\EC2\q180201_EC2_01.raw [2/9/2018 3:10:57 PM] [2/9/2018 3:11:06 PM] [1] 11% [2/9/2018 3:11:08 PM] [1] 14% [2/9/2018 3:11:11 PM] [1] 17% [2/9/2018 3:11:13 PM] [1] 20% [2/9/2018 3:11:16 PM] [1] 23% [2/9/2018 3:11:20 PM] [1] 26% [2/9/2018 3:11:22 PM] [1] 29% [2/9/2018 3:11:26 PM] [1] 32% [2/9/2018 3:11:28 PM] [1] 34% [2/9/2018 3:11:30 PM] [1] 36% [2/9/2018 3:11:34 PM] [1] 39% [2/9/2018 3:11:37 PM] [1] 42% [2/9/2018 3:11:40 PM] [1] 45% [2/9/2018 3:11:43 PM] [1] 48% [2/9/2018 3:11:46 PM] [1] 51% [2/9/2018 3:11:48 PM] [1] 53% [2/9/2018 3:11:50 PM] [1] 55% [2/9/2018 3:11:54 PM] [1] 57% [2/9/2018 3:11:57 PM] [1] 59% [2/9/2018 3:11:59 PM] [1] 60% [2/9/2018 3:12:03 PM] [1] 62% [2/9/2018 3:12:06 PM] [1] 63% [2/9/2018 3:12:11 PM] [1] 65% [2/9/2018 3:12:15 PM] [1] 66% [2/9/2018 3:12:17 PM] [1] 67% [2/9/2018 3:12:25 PM] [1] 68% [2/9/2018 3:12:34 PM] [1] 69% [2/9/2018 3:12:36 PM] [1] 70% [2/9/2018 3:12:36 PM] [2/9/2018 3:12:37 PM] Updating peak statistics [2/9/2018 3:12:37 PM] Joining file C:\Skyline\data\QC\q180201_EC2_01_1916799047.raw.skyd [2/9/2018 3:12:37 PM] Removing results before 1/10/2018... [2/9/2018 3:12:37 PM] Saving file... [2/9/2018 3:12:37 PM] File PRM_EC2_biognosys_template.sky saved. [2/9/2018 3:12:41 PM] Uploaded 264.00 KB of 74.18 MB [2/9/2018 3:12:43 PM] Uploaded 808.00 KB of 74.18 MB [2/9/2018 3:12:45 PM] 1% - Uploaded 1.54 MB of 74.18 MB [2/9/2018 3:12:47 PM] Uploaded 2.54 MB of 74.18 MB [2/9/2018 3:12:49 PM] 2% - Uploaded 3.79 MB of 74.18 MB [2/9/2018 3:12:51 PM] 3% - Uploaded 5.23 MB of 74.18 MB [2/9/2018 3:12:53 PM] 4% - Uploaded 6.85 MB of 74.18 MB [2/9/2018 3:12:55 PM] 5% - Uploaded 8.54 MB of 74.18 MB [2/9/2018 3:12:57 PM] 6% - Uploaded 10.23 MB of 74.18 MB [2/9/2018 3:12:59 PM] 8% - Uploaded 11.91 MB of 74.18 MB [2/9/2018 3:13:01 PM] 9% - Uploaded 13.60 MB of 74.18 MB [2/9/2018 3:13:03 PM] 10% - Uploaded 15.16 MB of 74.18 MB [2/9/2018 3:13:05 PM] 11% - Uploaded 16.79 MB of 74.18 MB [2/9/2018 3:13:07 PM] 12% - Uploaded 18.48 MB of 74.18 MB [2/9/2018 3:13:09 PM] 13% - Uploaded 20.16 MB of 74.18 MB [2/9/2018 3:13:11 PM] 14% - Uploaded 21.85 MB of 74.18 MB [2/9/2018 3:13:13 PM] 15% - Uploaded 23.54 MB of 74.18 MB [2/9/2018 3:13:15 PM] 17% - Uploaded 25.23 MB of 74.18 MB [2/9/2018 3:13:17 PM] 18% - Uploaded 26.91 MB of 74.18 MB [2/9/2018 3:13:19 PM] 19% - Uploaded 28.59 MB of 74.18 MB [2/9/2018 3:13:21 PM] 20% - Uploaded 30.23 MB of 74.18 MB [2/9/2018 3:13:24 PM] 21% - Uploaded 31.91 MB of 74.18 MB [2/9/2018 3:13:26 PM] 22% - Uploaded 33.60 MB of 74.18 MB [2/9/2018 3:13:28 PM] 23% - Uploaded 35.23 MB of 74.18 MB [2/9/2018 3:13:30 PM] 24% - Uploaded 36.91 MB of 74.18 MB [2/9/2018 3:13:32 PM] 26% - Uploaded 38.60 MB of 74.18 MB [2/9/2018 3:13:34 PM] 27% - Uploaded 40.29 MB of 74.18 MB [2/9/2018 3:13:36 PM] 28% - Uploaded 41.98 MB of 74.18 MB [2/9/2018 3:13:38 PM] 29% - Uploaded 43.66 MB of 74.18 MB [2/9/2018 3:13:40 PM] 30% - Uploaded 45.35 MB of 74.18 MB [2/9/2018 3:13:42 PM] 31% - Uploaded 47.04 MB of 74.18 MB [2/9/2018 3:13:44 PM] 32% - Uploaded 48.73 MB of 74.18 MB [2/9/2018 3:13:46 PM] 33% - Uploaded 50.41 MB of 74.18 MB [2/9/2018 3:13:48 PM] 35% - Uploaded 52.10 MB of 74.18 MB [2/9/2018 3:13:50 PM] 36% - Uploaded 53.79 MB of 74.18 MB [2/9/2018 3:13:52 PM] 37% - Uploaded 55.48 MB of 74.18 MB [2/9/2018 3:13:54 PM] 38% - Uploaded 57.16 MB of 74.18 MB [2/9/2018 3:13:56 PM] 39% - Uploaded 58.85 MB of 74.18 MB [2/9/2018 3:13:58 PM] 40% - Uploaded 60.54 MB of 74.18 MB [2/9/2018 3:14:00 PM] 41% - Uploaded 62.23 MB of 74.18 MB [2/9/2018 3:14:02 PM] 43% - Uploaded 63.91 MB of 74.18 MB [2/9/2018 3:14:04 PM] 44% - Uploaded 65.60 MB of 74.18 MB [2/9/2018 3:14:06 PM] 45% - Uploaded 67.29 MB of 74.18 MB [2/9/2018 3:14:08 PM] 46% - Uploaded 68.98 MB of 74.18 MB [2/9/2018 3:14:10 PM] 47% - Uploaded 70.66 MB of 74.18 MB [2/9/2018 3:14:12 PM] 48% - Uploaded 72.34 MB of 74.18 MB [2/9/2018 3:14:14 PM] 49% - Uploaded 73.98 MB of 74.18 MB [2/9/2018 3:14:15 PM] 100% - Uploaded 74.18 MB of 74.18 MB [2/9/2018 3:14:15 PM] Unknown error attempting to publish to Panorama. [2/9/2018 3:14:15 PM] File was not uploaded to the server. Please try again, or if the problem persists, please contact your Panorama server administrator. [2/9/2018 3:14:15 PM] The remote server returned an error: (404) Not Found. [2/9/2018 3:14:15 PM] SkylineDailyRunner.exe exited successfully. [2/9/2018 3:14:15 PM] q180207_EC2_01.raw is ready [2/9/2018 3:14:15 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 3:14:15 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 3:14:19 PM] Opening file... [2/9/2018 3:14:19 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 3:14:20 PM] [2/9/2018 3:14:20 PM] Adding results... [2/9/2018 3:14:20 PM] 1. C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 3:14:20 PM] [2/9/2018 3:14:20 PM] Error: Failed importing the results file Importing q180207_EC2_01.raw. [2/9/2018 3:14:20 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw'. [2/9/2018 3:14:20 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 3:14:20 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 3:14:20 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 3:14:20 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 3:14:20 PM] --- End of inner exception stack trace --- [2/9/2018 3:14:20 PM] [2/9/2018 3:14:20 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 3:14:20 PM] Adding q180207_EC2_01.raw to re-import queue. [2/9/2018 3:14:20 PM] Waiting for files... [2/9/2018 3:26:20 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw. [2/9/2018 3:26:20 PM] q180207_EC2_01.raw is ready [2/9/2018 3:26:20 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 3:26:20 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 3:26:23 PM] Opening file... [2/9/2018 3:26:24 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 3:26:24 PM] [2/9/2018 3:26:24 PM] Adding results... [2/9/2018 3:26:24 PM] 1. C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 3:26:24 PM] [2/9/2018 3:26:24 PM] Error: Failed importing the results file Importing q180207_EC2_01.raw. [2/9/2018 3:26:24 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw'. [2/9/2018 3:26:24 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 3:26:25 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 3:26:25 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 3:26:25 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 3:26:25 PM] --- End of inner exception stack trace --- [2/9/2018 3:26:25 PM] [2/9/2018 3:26:25 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 3:26:25 PM] Adding C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw to re-import queue. [2/9/2018 3:38:25 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw. [2/9/2018 3:38:25 PM] q180207_EC2_01.raw is ready [2/9/2018 3:38:25 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 3:38:25 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 3:38:28 PM] Opening file... [2/9/2018 3:38:28 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 3:38:28 PM] [2/9/2018 3:38:29 PM] Adding results... [2/9/2018 3:38:29 PM] 1. C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 3:38:29 PM] [2/9/2018 3:38:29 PM] Error: Failed importing the results file Importing q180207_EC2_01.raw. [2/9/2018 3:38:29 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw'. [2/9/2018 3:38:29 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 3:38:29 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 3:38:29 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 3:38:29 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 3:38:29 PM] --- End of inner exception stack trace --- [2/9/2018 3:38:29 PM] [2/9/2018 3:38:29 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 3:38:29 PM] Adding C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw to re-import queue. [2/9/2018 3:50:29 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw. [2/9/2018 3:50:29 PM] q180207_EC2_01.raw is ready [2/9/2018 3:50:29 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 3:50:29 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 3:50:32 PM] Opening file... [2/9/2018 3:50:33 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 3:50:33 PM] [2/9/2018 3:50:33 PM] Adding results... [2/9/2018 3:50:33 PM] 1. C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 3:50:33 PM] [2/9/2018 3:50:33 PM] Error: Failed importing the results file Importing q180207_EC2_01.raw. [2/9/2018 3:50:33 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw'. [2/9/2018 3:50:33 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 3:50:33 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 3:50:33 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 3:50:33 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 3:50:33 PM] --- End of inner exception stack trace --- [2/9/2018 3:50:33 PM] [2/9/2018 3:50:33 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 3:50:33 PM] Adding C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw to re-import queue. [2/9/2018 4:02:33 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw. [2/9/2018 4:02:33 PM] q180207_EC2_01.raw is ready [2/9/2018 4:02:33 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 4:02:33 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 4:02:36 PM] Opening file... [2/9/2018 4:02:37 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 4:02:37 PM] [2/9/2018 4:02:37 PM] Adding results... [2/9/2018 4:02:37 PM] 1. C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 4:02:37 PM] [2/9/2018 4:02:37 PM] Error: Failed importing the results file Importing q180207_EC2_01.raw. [2/9/2018 4:02:37 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw'. [2/9/2018 4:02:37 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 4:02:38 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 4:02:38 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 4:02:38 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 4:02:38 PM] --- End of inner exception stack trace --- [2/9/2018 4:02:38 PM] [2/9/2018 4:02:38 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 4:02:38 PM] Adding C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw to re-import queue. [2/9/2018 4:14:38 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw. [2/9/2018 4:14:38 PM] q180207_EC2_01.raw is ready [2/9/2018 4:14:38 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 4:14:38 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 4:14:42 PM] Opening file... [2/9/2018 4:14:43 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 4:14:44 PM] [2/9/2018 4:14:44 PM] Adding results... [2/9/2018 4:14:44 PM] 1. C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 4:14:44 PM] [2/9/2018 4:14:44 PM] Error: Failed importing the results file Importing q180207_EC2_01.raw. [2/9/2018 4:14:44 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw'. [2/9/2018 4:14:44 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 4:14:44 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 4:14:44 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 4:14:44 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 4:14:44 PM] --- End of inner exception stack trace --- [2/9/2018 4:14:44 PM] [2/9/2018 4:14:44 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 4:14:44 PM] Adding C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw to re-import queue. [2/9/2018 4:26:44 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw. [2/9/2018 4:26:44 PM] q180207_EC2_01.raw is ready [2/9/2018 4:26:44 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 4:26:44 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 4:26:47 PM] Opening file... [2/9/2018 4:26:48 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 4:26:48 PM] [2/9/2018 4:26:48 PM] Adding results... [2/9/2018 4:26:48 PM] 1. C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 4:26:48 PM] [2/9/2018 4:26:49 PM] Error: Failed importing the results file Importing q180207_EC2_01.raw. [2/9/2018 4:26:49 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw'. [2/9/2018 4:26:49 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 4:26:49 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 4:26:49 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 4:26:49 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 4:26:49 PM] --- End of inner exception stack trace --- [2/9/2018 4:26:49 PM] [2/9/2018 4:26:49 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 4:26:49 PM] Adding C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw to re-import queue. [2/9/2018 4:38:49 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw. [2/9/2018 4:38:49 PM] q180207_EC2_01.raw is ready [2/9/2018 4:38:49 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 4:38:49 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 4:38:52 PM] Opening file... [2/9/2018 4:38:52 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 4:38:53 PM] [2/9/2018 4:38:53 PM] Adding results... [2/9/2018 4:38:53 PM] 1. C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 4:38:53 PM] [2/9/2018 4:38:53 PM] Error: Failed importing the results file Importing q180207_EC2_01.raw. [2/9/2018 4:38:53 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw'. [2/9/2018 4:38:53 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 4:38:53 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 4:38:53 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 4:38:53 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 4:38:53 PM] --- End of inner exception stack trace --- [2/9/2018 4:38:53 PM] [2/9/2018 4:38:53 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 4:38:53 PM] Adding C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw to re-import queue. [2/9/2018 4:50:53 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw. [2/9/2018 4:50:53 PM] q180207_EC2_01.raw is ready [2/9/2018 4:50:53 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 4:50:53 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 4:50:56 PM] Opening file... [2/9/2018 4:50:57 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 4:50:57 PM] [2/9/2018 4:50:57 PM] Adding results... [2/9/2018 4:50:57 PM] 1. C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 4:50:57 PM] [2/9/2018 4:50:57 PM] Error: Failed importing the results file Importing q180207_EC2_01.raw. [2/9/2018 4:50:57 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw'. [2/9/2018 4:50:57 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 4:50:57 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 4:50:57 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 4:50:57 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 4:50:57 PM] --- End of inner exception stack trace --- [2/9/2018 4:50:57 PM] [2/9/2018 4:50:57 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 4:50:57 PM] Adding C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw to re-import queue. [2/9/2018 5:02:58 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw. [2/9/2018 5:02:58 PM] q180207_EC2_01.raw is ready [2/9/2018 5:02:58 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 5:02:58 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 5:03:00 PM] Opening file... [2/9/2018 5:03:01 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 5:03:01 PM] [2/9/2018 5:03:01 PM] Adding results... [2/9/2018 5:03:01 PM] 1. C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 5:03:01 PM] [2/9/2018 5:03:02 PM] Error: Failed importing the results file Importing q180207_EC2_01.raw. [2/9/2018 5:03:02 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw'. [2/9/2018 5:03:02 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 5:03:02 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 5:03:02 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 5:03:02 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 5:03:02 PM] --- End of inner exception stack trace --- [2/9/2018 5:03:02 PM] [2/9/2018 5:03:02 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 5:03:02 PM] Adding C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw to re-import queue. [2/9/2018 5:15:02 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw. [2/9/2018 5:15:02 PM] q180207_EC2_01.raw is ready [2/9/2018 5:15:02 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 5:15:02 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 5:15:05 PM] Opening file... [2/9/2018 5:15:05 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 5:15:06 PM] [2/9/2018 5:15:06 PM] Adding results... [2/9/2018 5:15:06 PM] 1. C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 5:15:06 PM] [2/9/2018 5:15:06 PM] Error: Failed importing the results file Importing q180207_EC2_01.raw. [2/9/2018 5:15:06 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw'. [2/9/2018 5:15:06 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 5:15:06 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 5:15:06 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 5:15:06 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 5:15:06 PM] --- End of inner exception stack trace --- [2/9/2018 5:15:06 PM] [2/9/2018 5:15:06 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 5:15:06 PM] Adding C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw to re-import queue. [2/9/2018 5:27:06 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw. [2/9/2018 5:27:06 PM] q180207_EC2_01.raw is ready [2/9/2018 5:27:06 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 5:27:06 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 5:27:09 PM] Opening file... [2/9/2018 5:27:10 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 5:27:10 PM] [2/9/2018 5:27:10 PM] Adding results... [2/9/2018 5:27:10 PM] 1. C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 5:27:10 PM] [2/9/2018 5:27:10 PM] Error: Failed importing the results file Importing q180207_EC2_01.raw. [2/9/2018 5:27:10 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw'. [2/9/2018 5:27:11 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 5:27:11 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 5:27:11 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 5:27:11 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 5:27:11 PM] --- End of inner exception stack trace --- [2/9/2018 5:27:11 PM] [2/9/2018 5:27:11 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 5:27:11 PM] Adding C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw to re-import queue. [2/9/2018 5:39:11 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw. [2/9/2018 5:39:11 PM] q180207_EC2_01.raw is ready [2/9/2018 5:39:11 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 5:39:11 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 5:39:14 PM] Opening file... [2/9/2018 5:39:14 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 5:39:15 PM] [2/9/2018 5:39:15 PM] Adding results... [2/9/2018 5:39:15 PM] 1. C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 5:39:15 PM] [2/9/2018 5:39:15 PM] Error: Failed importing the results file Importing q180207_EC2_01.raw. [2/9/2018 5:39:15 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw'. [2/9/2018 5:39:15 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 5:39:15 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 5:39:15 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 5:39:15 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 5:39:15 PM] --- End of inner exception stack trace --- [2/9/2018 5:39:15 PM] [2/9/2018 5:39:15 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 5:39:15 PM] Adding C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw to re-import queue. [2/9/2018 5:51:15 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw. [2/9/2018 5:51:15 PM] q180207_EC2_01.raw is ready [2/9/2018 5:51:15 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 5:51:15 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 5:51:18 PM] Opening file... [2/9/2018 5:51:19 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 5:51:19 PM] [2/9/2018 5:51:19 PM] Adding results... [2/9/2018 5:51:19 PM] 1. C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 5:51:19 PM] [2/9/2018 5:51:19 PM] Error: Failed importing the results file Importing q180207_EC2_01.raw. [2/9/2018 5:51:19 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw'. [2/9/2018 5:51:19 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 5:51:19 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 5:51:19 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 5:51:19 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 5:51:19 PM] --- End of inner exception stack trace --- [2/9/2018 5:51:19 PM] [2/9/2018 5:51:19 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 5:51:19 PM] Adding C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw to re-import queue. [2/9/2018 6:03:19 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw. [2/9/2018 6:03:19 PM] q180207_EC2_01.raw is ready [2/9/2018 6:03:19 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 6:03:19 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 6:03:22 PM] Opening file... [2/9/2018 6:03:23 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 6:03:23 PM] [2/9/2018 6:03:23 PM] Adding results... [2/9/2018 6:03:23 PM] 1. C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 6:03:23 PM] [2/9/2018 6:03:23 PM] Error: Failed importing the results file Importing q180207_EC2_01.raw. [2/9/2018 6:03:23 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw'. [2/9/2018 6:03:23 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 6:03:23 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 6:03:23 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 6:03:23 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 6:03:24 PM] --- End of inner exception stack trace --- [2/9/2018 6:03:24 PM] [2/9/2018 6:03:24 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 6:03:24 PM] Adding C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw to re-import queue. [2/9/2018 6:08:29 PM] q180209_EC2_01.raw added to directory. [2/9/2018 6:08:30 PM] q180209_EC2_02.raw added to directory. [2/9/2018 6:08:34 PM] q180209_EC2_01.raw is ready [2/9/2018 6:08:34 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 6:08:34 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 6:08:45 PM] Opening file... [2/9/2018 6:08:46 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 6:08:46 PM] [2/9/2018 6:08:46 PM] Adding results... [2/9/2018 6:08:47 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_01.raw [2/9/2018 6:08:47 PM] [2/9/2018 6:08:51 PM] [1] 13% [2/9/2018 6:08:53 PM] [1] 16% [2/9/2018 6:08:55 PM] [1] 19% [2/9/2018 6:08:58 PM] [1] 22% [2/9/2018 6:09:00 PM] [1] 25% [2/9/2018 6:09:02 PM] [1] 28% [2/9/2018 6:09:05 PM] [1] 32% [2/9/2018 6:09:07 PM] [1] 36% [2/9/2018 6:09:09 PM] [1] 39% [2/9/2018 6:09:12 PM] [1] 43% [2/9/2018 6:09:14 PM] [1] 47% [2/9/2018 6:09:17 PM] [1] 51% [2/9/2018 6:09:19 PM] [1] 54% [2/9/2018 6:09:21 PM] [1] 57% [2/9/2018 6:09:24 PM] [1] 60% [2/9/2018 6:09:27 PM] [1] 63% [2/9/2018 6:09:30 PM] [1] 65% [2/9/2018 6:09:32 PM] [1] 66% [2/9/2018 6:09:35 PM] [1] 68% [2/9/2018 6:09:37 PM] [2/9/2018 6:09:37 PM] Updating peak statistics [2/9/2018 6:09:38 PM] Joining file C:\Skyline\data\QC\q180209_EC2_01_1916799047.raw.skyd [2/9/2018 6:09:38 PM] Removing results before 1/10/2018... [2/9/2018 6:09:38 PM] Saving file... [2/9/2018 6:09:38 PM] File PRM_EC2_biognosys_template.sky saved. [2/9/2018 6:09:42 PM] Uploaded 720.00 KB of 74.86 MB [2/9/2018 6:09:44 PM] 1% - Uploaded 2.36 MB of 74.86 MB [2/9/2018 6:09:46 PM] 2% - Uploaded 4.05 MB of 74.86 MB [2/9/2018 6:09:48 PM] 3% - Uploaded 5.73 MB of 74.86 MB [2/9/2018 6:09:50 PM] 4% - Uploaded 7.42 MB of 74.86 MB [2/9/2018 6:09:52 PM] 6% - Uploaded 9.11 MB of 74.86 MB [2/9/2018 6:09:54 PM] 7% - Uploaded 10.80 MB of 74.86 MB [2/9/2018 6:09:56 PM] 8% - Uploaded 12.48 MB of 74.86 MB [2/9/2018 6:09:58 PM] 9% - Uploaded 14.17 MB of 74.86 MB [2/9/2018 6:10:00 PM] 10% - Uploaded 15.86 MB of 74.86 MB [2/9/2018 6:10:02 PM] 11% - Uploaded 17.55 MB of 74.86 MB [2/9/2018 6:10:04 PM] 12% - Uploaded 19.23 MB of 74.86 MB [2/9/2018 6:10:06 PM] 13% - Uploaded 20.92 MB of 74.86 MB [2/9/2018 6:10:09 PM] 15% - Uploaded 22.61 MB of 74.86 MB [2/9/2018 6:10:11 PM] 16% - Uploaded 24.30 MB of 74.86 MB [2/9/2018 6:10:13 PM] 17% - Uploaded 25.98 MB of 74.86 MB [2/9/2018 6:10:15 PM] 18% - Uploaded 27.67 MB of 74.86 MB [2/9/2018 6:10:17 PM] 19% - Uploaded 29.36 MB of 74.86 MB [2/9/2018 6:10:19 PM] 20% - Uploaded 31.05 MB of 74.86 MB [2/9/2018 6:10:21 PM] 21% - Uploaded 32.73 MB of 74.86 MB [2/9/2018 6:10:23 PM] 22% - Uploaded 34.42 MB of 74.86 MB [2/9/2018 6:10:25 PM] 24% - Uploaded 36.11 MB of 74.86 MB [2/9/2018 6:10:27 PM] 25% - Uploaded 37.80 MB of 74.86 MB [2/9/2018 6:10:29 PM] 26% - Uploaded 39.48 MB of 74.86 MB [2/9/2018 6:10:31 PM] 27% - Uploaded 41.17 MB of 74.86 MB [2/9/2018 6:10:33 PM] 28% - Uploaded 42.86 MB of 74.86 MB [2/9/2018 6:10:35 PM] 29% - Uploaded 44.55 MB of 74.86 MB [2/9/2018 6:10:37 PM] 30% - Uploaded 46.23 MB of 74.86 MB [2/9/2018 6:10:39 PM] 32% - Uploaded 47.92 MB of 74.86 MB [2/9/2018 6:10:41 PM] 33% - Uploaded 49.61 MB of 74.86 MB [2/9/2018 6:10:43 PM] 34% - Uploaded 51.30 MB of 74.86 MB [2/9/2018 6:10:45 PM] 35% - Uploaded 52.98 MB of 74.86 MB [2/9/2018 6:10:47 PM] 36% - Uploaded 54.67 MB of 74.86 MB [2/9/2018 6:10:49 PM] 37% - Uploaded 56.36 MB of 74.86 MB [2/9/2018 6:10:51 PM] 38% - Uploaded 58.05 MB of 74.86 MB [2/9/2018 6:10:53 PM] 39% - Uploaded 59.73 MB of 74.86 MB [2/9/2018 6:10:55 PM] 41% - Uploaded 61.42 MB of 74.86 MB [2/9/2018 6:10:57 PM] 42% - Uploaded 63.11 MB of 74.86 MB [2/9/2018 6:10:59 PM] 43% - Uploaded 64.80 MB of 74.86 MB [2/9/2018 6:11:01 PM] 44% - Uploaded 66.48 MB of 74.86 MB [2/9/2018 6:11:03 PM] 45% - Uploaded 68.17 MB of 74.86 MB [2/9/2018 6:11:05 PM] 46% - Uploaded 69.86 MB of 74.86 MB [2/9/2018 6:11:07 PM] 47% - Uploaded 71.55 MB of 74.86 MB [2/9/2018 6:11:09 PM] 48% - Uploaded 73.20 MB of 74.86 MB [2/9/2018 6:11:11 PM] 50% - Uploaded 74.86 MB of 74.86 MB [2/9/2018 6:11:11 PM] 100% [2/9/2018 6:11:12 PM] Unknown error attempting to publish to Panorama. [2/9/2018 6:11:12 PM] File was not uploaded to the server. Please try again, or if the problem persists, please contact your Panorama server administrator. [2/9/2018 6:11:12 PM] The remote server returned an error: (404) Not Found. [2/9/2018 6:11:12 PM] SkylineDailyRunner.exe exited successfully. [2/9/2018 6:11:12 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw. [2/9/2018 6:11:12 PM] q180207_EC2_01.raw is ready [2/9/2018 6:11:12 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 6:11:12 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 6:11:15 PM] Opening file... [2/9/2018 6:11:16 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 6:11:16 PM] [2/9/2018 6:11:16 PM] Adding results... [2/9/2018 6:11:16 PM] 1. C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 6:11:16 PM] [2/9/2018 6:11:16 PM] Error: Failed importing the results file Importing q180207_EC2_01.raw. [2/9/2018 6:11:16 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw'. [2/9/2018 6:11:16 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw [2/9/2018 6:11:16 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 6:11:16 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 6:11:16 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 6:11:16 PM] --- End of inner exception stack trace --- [2/9/2018 6:11:17 PM] [2/9/2018 6:11:17 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 6:11:17 PM] C:\Xcalibur\data\2018\EC2\q180207_EC2_01.raw failed to import successfully. Skipping... [2/9/2018 6:11:17 PM] q180209_EC2_02.raw is ready [2/9/2018 6:11:17 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 6:11:17 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 6:11:19 PM] Opening file... [2/9/2018 6:11:20 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 6:11:20 PM] [2/9/2018 6:11:20 PM] Adding results... [2/9/2018 6:11:20 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 6:11:20 PM] [2/9/2018 6:11:21 PM] Error: Failed importing the results file Importing q180209_EC2_02.raw. [2/9/2018 6:11:21 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw'. [2/9/2018 6:11:21 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 6:11:21 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 6:11:21 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 6:11:21 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 6:11:21 PM] --- End of inner exception stack trace --- [2/9/2018 6:11:21 PM] [2/9/2018 6:11:21 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 6:11:21 PM] Adding q180209_EC2_02.raw to re-import queue. [2/9/2018 6:11:21 PM] Waiting for files... [2/9/2018 6:23:21 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw. [2/9/2018 6:23:21 PM] q180209_EC2_02.raw is ready [2/9/2018 6:23:21 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 6:23:21 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 6:23:24 PM] Opening file... [2/9/2018 6:23:25 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 6:23:25 PM] [2/9/2018 6:23:25 PM] Adding results... [2/9/2018 6:23:25 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 6:23:25 PM] [2/9/2018 6:23:25 PM] Error: Failed importing the results file Importing q180209_EC2_02.raw. [2/9/2018 6:23:25 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw'. [2/9/2018 6:23:25 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 6:23:25 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 6:23:25 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 6:23:25 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 6:23:25 PM] --- End of inner exception stack trace --- [2/9/2018 6:23:25 PM] [2/9/2018 6:23:25 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 6:23:25 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw to re-import queue. [2/9/2018 6:35:25 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw. [2/9/2018 6:35:25 PM] q180209_EC2_02.raw is ready [2/9/2018 6:35:25 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 6:35:26 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 6:35:28 PM] Opening file... [2/9/2018 6:35:29 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 6:35:29 PM] [2/9/2018 6:35:29 PM] Adding results... [2/9/2018 6:35:29 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 6:35:29 PM] [2/9/2018 6:35:30 PM] Error: Failed importing the results file Importing q180209_EC2_02.raw. [2/9/2018 6:35:30 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw'. [2/9/2018 6:35:30 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 6:35:30 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 6:35:30 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 6:35:30 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 6:35:30 PM] --- End of inner exception stack trace --- [2/9/2018 6:35:30 PM] [2/9/2018 6:35:30 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 6:35:30 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw to re-import queue. [2/9/2018 6:47:30 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw. [2/9/2018 6:47:30 PM] q180209_EC2_02.raw is ready [2/9/2018 6:47:30 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 6:47:30 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 6:47:33 PM] Opening file... [2/9/2018 6:47:34 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 6:47:34 PM] [2/9/2018 6:47:34 PM] Adding results... [2/9/2018 6:47:34 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 6:47:34 PM] [2/9/2018 6:47:34 PM] Error: Failed importing the results file Importing q180209_EC2_02.raw. [2/9/2018 6:47:34 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw'. [2/9/2018 6:47:34 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 6:47:34 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 6:47:34 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 6:47:34 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 6:47:34 PM] --- End of inner exception stack trace --- [2/9/2018 6:47:34 PM] [2/9/2018 6:47:34 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 6:47:34 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw to re-import queue. [2/9/2018 6:59:34 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw. [2/9/2018 6:59:34 PM] q180209_EC2_02.raw is ready [2/9/2018 6:59:35 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 6:59:35 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 6:59:37 PM] Opening file... [2/9/2018 6:59:38 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 6:59:38 PM] [2/9/2018 6:59:38 PM] Adding results... [2/9/2018 6:59:38 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 6:59:38 PM] [2/9/2018 6:59:39 PM] Error: Failed importing the results file Importing q180209_EC2_02.raw. [2/9/2018 6:59:39 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw'. [2/9/2018 6:59:39 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 6:59:39 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 6:59:39 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 6:59:39 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 6:59:39 PM] --- End of inner exception stack trace --- [2/9/2018 6:59:39 PM] [2/9/2018 6:59:39 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 6:59:39 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw to re-import queue. [2/9/2018 7:11:39 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw. [2/9/2018 7:11:39 PM] q180209_EC2_02.raw is ready [2/9/2018 7:11:39 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 7:11:39 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 7:11:42 PM] Opening file... [2/9/2018 7:11:43 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 7:11:43 PM] [2/9/2018 7:11:43 PM] Adding results... [2/9/2018 7:11:43 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 7:11:43 PM] [2/9/2018 7:11:43 PM] Error: Failed importing the results file Importing q180209_EC2_02.raw. [2/9/2018 7:11:43 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw'. [2/9/2018 7:11:43 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 7:11:43 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 7:11:43 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 7:11:43 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 7:11:43 PM] --- End of inner exception stack trace --- [2/9/2018 7:11:43 PM] [2/9/2018 7:11:43 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 7:11:43 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw to re-import queue. [2/9/2018 7:23:43 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw. [2/9/2018 7:23:43 PM] q180209_EC2_02.raw is ready [2/9/2018 7:23:43 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 7:23:43 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 7:23:46 PM] Opening file... [2/9/2018 7:23:47 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 7:23:47 PM] [2/9/2018 7:23:47 PM] Adding results... [2/9/2018 7:23:47 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 7:23:47 PM] [2/9/2018 7:23:47 PM] Error: Failed importing the results file Importing q180209_EC2_02.raw. [2/9/2018 7:23:47 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw'. [2/9/2018 7:23:47 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 7:23:47 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 7:23:47 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 7:23:47 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 7:23:47 PM] --- End of inner exception stack trace --- [2/9/2018 7:23:48 PM] [2/9/2018 7:23:48 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 7:23:48 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw to re-import queue. [2/9/2018 7:35:48 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw. [2/9/2018 7:35:48 PM] q180209_EC2_02.raw is ready [2/9/2018 7:35:48 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 7:35:48 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 7:35:50 PM] Opening file... [2/9/2018 7:35:51 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 7:35:51 PM] [2/9/2018 7:35:51 PM] Adding results... [2/9/2018 7:35:51 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 7:35:51 PM] [2/9/2018 7:35:52 PM] Error: Failed importing the results file Importing q180209_EC2_02.raw. [2/9/2018 7:35:52 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw'. [2/9/2018 7:35:52 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 7:35:52 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 7:35:52 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 7:35:52 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 7:35:52 PM] --- End of inner exception stack trace --- [2/9/2018 7:35:52 PM] [2/9/2018 7:35:52 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 7:35:52 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw to re-import queue. [2/9/2018 7:47:52 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw. [2/9/2018 7:47:52 PM] q180209_EC2_02.raw is ready [2/9/2018 7:47:52 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 7:47:52 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 7:47:55 PM] Opening file... [2/9/2018 7:47:55 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 7:47:56 PM] [2/9/2018 7:47:56 PM] Adding results... [2/9/2018 7:47:56 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 7:47:56 PM] [2/9/2018 7:47:56 PM] Error: Failed importing the results file Importing q180209_EC2_02.raw. [2/9/2018 7:47:56 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw'. [2/9/2018 7:47:56 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 7:47:56 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 7:47:56 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 7:47:56 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 7:47:56 PM] --- End of inner exception stack trace --- [2/9/2018 7:47:56 PM] [2/9/2018 7:47:56 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 7:47:56 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw to re-import queue. [2/9/2018 7:59:56 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw. [2/9/2018 7:59:56 PM] q180209_EC2_02.raw is ready [2/9/2018 7:59:56 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 7:59:56 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 7:59:59 PM] Opening file... [2/9/2018 8:00:00 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 8:00:00 PM] [2/9/2018 8:00:00 PM] Adding results... [2/9/2018 8:00:00 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 8:00:00 PM] [2/9/2018 8:00:00 PM] Error: Failed importing the results file Importing q180209_EC2_02.raw. [2/9/2018 8:00:00 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw'. [2/9/2018 8:00:00 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 8:00:00 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 8:00:00 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 8:00:00 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 8:00:00 PM] --- End of inner exception stack trace --- [2/9/2018 8:00:00 PM] [2/9/2018 8:00:00 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 8:00:00 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw to re-import queue. [2/9/2018 8:12:00 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw. [2/9/2018 8:12:00 PM] q180209_EC2_02.raw is ready [2/9/2018 8:12:01 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 8:12:01 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 8:12:03 PM] Opening file... [2/9/2018 8:12:04 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 8:12:04 PM] [2/9/2018 8:12:04 PM] Adding results... [2/9/2018 8:12:05 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 8:12:05 PM] [2/9/2018 8:12:05 PM] Error: Failed importing the results file Importing q180209_EC2_02.raw. [2/9/2018 8:12:05 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw'. [2/9/2018 8:12:05 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 8:12:05 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 8:12:05 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 8:12:05 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 8:12:05 PM] --- End of inner exception stack trace --- [2/9/2018 8:12:05 PM] [2/9/2018 8:12:05 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 8:12:05 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw to re-import queue. [2/9/2018 8:24:05 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw. [2/9/2018 8:24:05 PM] q180209_EC2_02.raw is ready [2/9/2018 8:24:05 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 8:24:05 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 8:24:08 PM] Opening file... [2/9/2018 8:24:09 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 8:24:09 PM] [2/9/2018 8:24:09 PM] Adding results... [2/9/2018 8:24:09 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 8:24:09 PM] [2/9/2018 8:24:09 PM] Error: Failed importing the results file Importing q180209_EC2_02.raw. [2/9/2018 8:24:09 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw'. [2/9/2018 8:24:09 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 8:24:09 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 8:24:09 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 8:24:09 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 8:24:09 PM] --- End of inner exception stack trace --- [2/9/2018 8:24:09 PM] [2/9/2018 8:24:09 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 8:24:09 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw to re-import queue. [2/9/2018 8:36:09 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw. [2/9/2018 8:36:09 PM] q180209_EC2_02.raw is ready [2/9/2018 8:36:09 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 8:36:09 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 8:36:12 PM] Opening file... [2/9/2018 8:36:13 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 8:36:13 PM] [2/9/2018 8:36:13 PM] Adding results... [2/9/2018 8:36:13 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 8:36:13 PM] [2/9/2018 8:36:14 PM] Error: Failed importing the results file Importing q180209_EC2_02.raw. [2/9/2018 8:36:14 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw'. [2/9/2018 8:36:14 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 8:36:14 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 8:36:14 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 8:36:14 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 8:36:14 PM] --- End of inner exception stack trace --- [2/9/2018 8:36:14 PM] [2/9/2018 8:36:14 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 8:36:14 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw to re-import queue. [2/9/2018 8:48:14 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw. [2/9/2018 8:48:14 PM] q180209_EC2_02.raw is ready [2/9/2018 8:48:14 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 8:48:14 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 8:48:17 PM] Opening file... [2/9/2018 8:48:17 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 8:48:18 PM] [2/9/2018 8:48:18 PM] Adding results... [2/9/2018 8:48:18 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 8:48:18 PM] [2/9/2018 8:48:18 PM] Error: Failed importing the results file Importing q180209_EC2_02.raw. [2/9/2018 8:48:18 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw'. [2/9/2018 8:48:18 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 8:48:18 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 8:48:18 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 8:48:18 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 8:48:18 PM] --- End of inner exception stack trace --- [2/9/2018 8:48:18 PM] [2/9/2018 8:48:18 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 8:48:18 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw to re-import queue. [2/9/2018 9:00:18 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw. [2/9/2018 9:00:18 PM] q180209_EC2_02.raw is ready [2/9/2018 9:00:18 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 9:00:18 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 9:00:21 PM] Opening file... [2/9/2018 9:00:22 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 9:00:22 PM] [2/9/2018 9:00:22 PM] Adding results... [2/9/2018 9:00:22 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 9:00:22 PM] [2/9/2018 9:00:22 PM] Error: Failed importing the results file Importing q180209_EC2_02.raw. [2/9/2018 9:00:22 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw'. [2/9/2018 9:00:22 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 9:00:22 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 9:00:22 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 9:00:22 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 9:00:22 PM] --- End of inner exception stack trace --- [2/9/2018 9:00:22 PM] [2/9/2018 9:00:22 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 9:00:22 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw to re-import queue. [2/9/2018 9:08:30 PM] q180209_EC2_03.raw added to directory. [2/9/2018 9:08:33 PM] q180209_EC2_03.raw is ready [2/9/2018 9:08:33 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 9:08:33 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 9:08:36 PM] Opening file... [2/9/2018 9:08:37 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 9:08:37 PM] [2/9/2018 9:08:37 PM] Adding results... [2/9/2018 9:08:38 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 9:08:38 PM] [2/9/2018 9:08:40 PM] Updating peak statistics [2/9/2018 9:08:40 PM] 100% [2/9/2018 9:08:40 PM] Error: Failed importing the results file Importing q180209_EC2_03.raw. [2/9/2018 9:08:40 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw'. [2/9/2018 9:08:40 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 9:08:40 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 9:08:40 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 9:08:40 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 9:08:40 PM] --- End of inner exception stack trace --- [2/9/2018 9:08:40 PM] [2/9/2018 9:08:40 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 9:08:40 PM] Adding q180209_EC2_03.raw to re-import queue. [2/9/2018 9:08:41 PM] Waiting for files... [2/9/2018 9:12:26 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw. [2/9/2018 9:12:26 PM] q180209_EC2_02.raw is ready [2/9/2018 9:12:26 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 9:12:26 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 9:12:28 PM] Opening file... [2/9/2018 9:12:29 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 9:12:29 PM] [2/9/2018 9:12:29 PM] Adding results... [2/9/2018 9:12:30 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_02.raw [2/9/2018 9:12:30 PM] [2/9/2018 9:12:34 PM] [1] 13% [2/9/2018 9:12:36 PM] [1] 16% [2/9/2018 9:12:38 PM] [1] 19% [2/9/2018 9:12:40 PM] [1] 22% [2/9/2018 9:12:42 PM] [1] 25% [2/9/2018 9:12:45 PM] [1] 29% [2/9/2018 9:12:47 PM] [1] 33% [2/9/2018 9:12:50 PM] [1] 37% [2/9/2018 9:12:52 PM] [1] 41% [2/9/2018 9:12:55 PM] [1] 45% [2/9/2018 9:12:57 PM] [1] 49% [2/9/2018 9:12:59 PM] [1] 53% [2/9/2018 9:13:01 PM] [1] 56% [2/9/2018 9:13:04 PM] [1] 59% [2/9/2018 9:13:06 PM] [1] 62% [2/9/2018 9:13:10 PM] [1] 65% [2/9/2018 9:13:12 PM] [1] 66% [2/9/2018 9:13:15 PM] [1] 68% [2/9/2018 9:13:17 PM] [2/9/2018 9:13:17 PM] Updating peak statistics [2/9/2018 9:13:18 PM] Joining file C:\Skyline\data\QC\q180209_EC2_02_1916799047.raw.skyd [2/9/2018 9:13:18 PM] Removing results before 1/10/2018... [2/9/2018 9:13:18 PM] Saving file... [2/9/2018 9:13:18 PM] File PRM_EC2_biognosys_template.sky saved. [2/9/2018 9:13:22 PM] Uploaded 368.00 KB of 75.58 MB [2/9/2018 9:13:24 PM] Uploaded 1,000.00 KB of 75.58 MB [2/9/2018 9:13:26 PM] 1% - Uploaded 1.85 MB of 75.58 MB [2/9/2018 9:13:28 PM] Uploaded 2.91 MB of 75.58 MB [2/9/2018 9:13:30 PM] 2% - Uploaded 4.23 MB of 75.58 MB [2/9/2018 9:13:32 PM] 3% - Uploaded 5.73 MB of 75.58 MB [2/9/2018 9:13:34 PM] 4% - Uploaded 7.41 MB of 75.58 MB [2/9/2018 9:13:36 PM] 5% - Uploaded 9.05 MB of 75.58 MB [2/9/2018 9:13:38 PM] 7% - Uploaded 10.73 MB of 75.58 MB [2/9/2018 9:13:40 PM] 8% - Uploaded 12.34 MB of 75.58 MB [2/9/2018 9:13:42 PM] 9% - Uploaded 14.03 MB of 75.58 MB [2/9/2018 9:13:44 PM] 10% - Uploaded 15.72 MB of 75.58 MB [2/9/2018 9:13:46 PM] 11% - Uploaded 17.41 MB of 75.58 MB [2/9/2018 9:13:48 PM] 12% - Uploaded 19.09 MB of 75.58 MB [2/9/2018 9:13:50 PM] 13% - Uploaded 20.78 MB of 75.58 MB [2/9/2018 9:13:52 PM] 14% - Uploaded 22.47 MB of 75.58 MB [2/9/2018 9:13:54 PM] 15% - Uploaded 24.16 MB of 75.58 MB [2/9/2018 9:13:56 PM] 17% - Uploaded 25.84 MB of 75.58 MB [2/9/2018 9:13:58 PM] 18% - Uploaded 27.53 MB of 75.58 MB [2/9/2018 9:14:00 PM] 19% - Uploaded 29.22 MB of 75.58 MB [2/9/2018 9:14:02 PM] 20% - Uploaded 30.91 MB of 75.58 MB [2/9/2018 9:14:04 PM] 21% - Uploaded 32.59 MB of 75.58 MB [2/9/2018 9:14:06 PM] 22% - Uploaded 34.28 MB of 75.58 MB [2/9/2018 9:14:08 PM] 23% - Uploaded 35.97 MB of 75.58 MB [2/9/2018 9:14:10 PM] 24% - Uploaded 37.66 MB of 75.58 MB [2/9/2018 9:14:12 PM] 26% - Uploaded 39.34 MB of 75.58 MB [2/9/2018 9:14:14 PM] 27% - Uploaded 41.03 MB of 75.58 MB [2/9/2018 9:14:16 PM] 28% - Uploaded 42.72 MB of 75.58 MB [2/9/2018 9:14:19 PM] 29% - Uploaded 44.41 MB of 75.58 MB [2/9/2018 9:14:21 PM] 30% - Uploaded 46.09 MB of 75.58 MB [2/9/2018 9:14:23 PM] 31% - Uploaded 47.78 MB of 75.58 MB [2/9/2018 9:14:25 PM] 32% - Uploaded 49.47 MB of 75.58 MB [2/9/2018 9:14:27 PM] 33% - Uploaded 51.16 MB of 75.58 MB [2/9/2018 9:14:29 PM] 34% - Uploaded 52.84 MB of 75.58 MB [2/9/2018 9:14:31 PM] 36% - Uploaded 54.53 MB of 75.58 MB [2/9/2018 9:14:33 PM] 37% - Uploaded 56.22 MB of 75.58 MB [2/9/2018 9:14:35 PM] 38% - Uploaded 57.91 MB of 75.58 MB [2/9/2018 9:14:37 PM] 39% - Uploaded 59.59 MB of 75.58 MB [2/9/2018 9:14:39 PM] 40% - Uploaded 61.28 MB of 75.58 MB [2/9/2018 9:14:41 PM] 41% - Uploaded 62.97 MB of 75.58 MB [2/9/2018 9:14:43 PM] 42% - Uploaded 64.67 MB of 75.58 MB [2/9/2018 9:14:45 PM] 43% - Uploaded 66.34 MB of 75.58 MB [2/9/2018 9:14:47 PM] 45% - Uploaded 68.03 MB of 75.58 MB [2/9/2018 9:14:49 PM] 46% - Uploaded 69.72 MB of 75.58 MB [2/9/2018 9:14:51 PM] 47% - Uploaded 71.41 MB of 75.58 MB [2/9/2018 9:14:53 PM] 48% - Uploaded 73.09 MB of 75.58 MB [2/9/2018 9:14:55 PM] 49% - Uploaded 74.78 MB of 75.58 MB [2/9/2018 9:14:56 PM] 100% - Uploaded 75.58 MB of 75.58 MB [2/9/2018 9:14:57 PM] Unknown error attempting to publish to Panorama. [2/9/2018 9:14:57 PM] File was not uploaded to the server. Please try again, or if the problem persists, please contact your Panorama server administrator. [2/9/2018 9:14:57 PM] The remote server returned an error: (404) Not Found. [2/9/2018 9:14:57 PM] SkylineDailyRunner.exe exited successfully. [2/9/2018 9:20:42 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw. [2/9/2018 9:20:42 PM] q180209_EC2_03.raw is ready [2/9/2018 9:20:42 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 9:20:42 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 9:20:45 PM] Opening file... [2/9/2018 9:20:45 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 9:20:46 PM] [2/9/2018 9:20:46 PM] Adding results... [2/9/2018 9:20:46 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 9:20:46 PM] [2/9/2018 9:20:46 PM] Error: Failed importing the results file Importing q180209_EC2_03.raw. [2/9/2018 9:20:46 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw'. [2/9/2018 9:20:46 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 9:20:46 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 9:20:46 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 9:20:46 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 9:20:46 PM] --- End of inner exception stack trace --- [2/9/2018 9:20:46 PM] [2/9/2018 9:20:46 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 9:20:46 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw to re-import queue. [2/9/2018 9:32:46 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw. [2/9/2018 9:32:46 PM] q180209_EC2_03.raw is ready [2/9/2018 9:32:46 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 9:32:46 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 9:32:49 PM] Opening file... [2/9/2018 9:32:50 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 9:32:50 PM] [2/9/2018 9:32:50 PM] Adding results... [2/9/2018 9:32:50 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 9:32:50 PM] [2/9/2018 9:32:50 PM] Error: Failed importing the results file Importing q180209_EC2_03.raw. [2/9/2018 9:32:50 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw'. [2/9/2018 9:32:50 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 9:32:50 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 9:32:50 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 9:32:51 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 9:32:51 PM] --- End of inner exception stack trace --- [2/9/2018 9:32:51 PM] [2/9/2018 9:32:51 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 9:32:51 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw to re-import queue. [2/9/2018 9:44:51 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw. [2/9/2018 9:44:51 PM] q180209_EC2_03.raw is ready [2/9/2018 9:44:51 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 9:44:51 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 9:44:54 PM] Opening file... [2/9/2018 9:44:54 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 9:44:55 PM] [2/9/2018 9:44:55 PM] Adding results... [2/9/2018 9:44:55 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 9:44:55 PM] [2/9/2018 9:44:55 PM] Error: Failed importing the results file Importing q180209_EC2_03.raw. [2/9/2018 9:44:55 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw'. [2/9/2018 9:44:55 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 9:44:55 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 9:44:55 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 9:44:55 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 9:44:55 PM] --- End of inner exception stack trace --- [2/9/2018 9:44:55 PM] [2/9/2018 9:44:55 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 9:44:55 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw to re-import queue. [2/9/2018 9:56:55 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw. [2/9/2018 9:56:55 PM] q180209_EC2_03.raw is ready [2/9/2018 9:56:55 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 9:56:55 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 9:56:58 PM] Opening file... [2/9/2018 9:56:59 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 9:56:59 PM] [2/9/2018 9:56:59 PM] Adding results... [2/9/2018 9:56:59 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 9:56:59 PM] [2/9/2018 9:56:59 PM] Error: Failed importing the results file Importing q180209_EC2_03.raw. [2/9/2018 9:56:59 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw'. [2/9/2018 9:56:59 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 9:56:59 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 9:56:59 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 9:56:59 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 9:56:59 PM] --- End of inner exception stack trace --- [2/9/2018 9:56:59 PM] [2/9/2018 9:56:59 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 9:56:59 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw to re-import queue. [2/9/2018 10:08:59 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw. [2/9/2018 10:08:59 PM] q180209_EC2_03.raw is ready [2/9/2018 10:08:59 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 10:08:59 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 10:09:02 PM] Opening file... [2/9/2018 10:09:03 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 10:09:03 PM] [2/9/2018 10:09:03 PM] Adding results... [2/9/2018 10:09:03 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 10:09:03 PM] [2/9/2018 10:09:03 PM] Error: Failed importing the results file Importing q180209_EC2_03.raw. [2/9/2018 10:09:03 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw'. [2/9/2018 10:09:03 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 10:09:04 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 10:09:04 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 10:09:04 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 10:09:04 PM] --- End of inner exception stack trace --- [2/9/2018 10:09:04 PM] [2/9/2018 10:09:04 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 10:09:04 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw to re-import queue. [2/9/2018 10:21:04 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw. [2/9/2018 10:21:04 PM] q180209_EC2_03.raw is ready [2/9/2018 10:21:04 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 10:21:04 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 10:21:07 PM] Opening file... [2/9/2018 10:21:07 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 10:21:08 PM] [2/9/2018 10:21:08 PM] Adding results... [2/9/2018 10:21:08 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 10:21:08 PM] [2/9/2018 10:21:08 PM] Error: Failed importing the results file Importing q180209_EC2_03.raw. [2/9/2018 10:21:08 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw'. [2/9/2018 10:21:08 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 10:21:08 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 10:21:08 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 10:21:08 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 10:21:08 PM] --- End of inner exception stack trace --- [2/9/2018 10:21:08 PM] [2/9/2018 10:21:08 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 10:21:08 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw to re-import queue. [2/9/2018 10:33:08 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw. [2/9/2018 10:33:08 PM] q180209_EC2_03.raw is ready [2/9/2018 10:33:08 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 10:33:08 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 10:33:11 PM] Opening file... [2/9/2018 10:33:12 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 10:33:12 PM] [2/9/2018 10:33:12 PM] Adding results... [2/9/2018 10:33:12 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 10:33:12 PM] [2/9/2018 10:33:12 PM] Error: Failed importing the results file Importing q180209_EC2_03.raw. [2/9/2018 10:33:13 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw'. [2/9/2018 10:33:13 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 10:33:13 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 10:33:13 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 10:33:13 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 10:33:13 PM] --- End of inner exception stack trace --- [2/9/2018 10:33:13 PM] [2/9/2018 10:33:13 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 10:33:13 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw to re-import queue. [2/9/2018 10:45:13 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw. [2/9/2018 10:45:13 PM] q180209_EC2_03.raw is ready [2/9/2018 10:45:13 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 10:45:13 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 10:45:16 PM] Opening file... [2/9/2018 10:45:16 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 10:45:17 PM] [2/9/2018 10:45:17 PM] Adding results... [2/9/2018 10:45:17 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 10:45:17 PM] [2/9/2018 10:45:17 PM] Error: Failed importing the results file Importing q180209_EC2_03.raw. [2/9/2018 10:45:17 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw'. [2/9/2018 10:45:17 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 10:45:17 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 10:45:17 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 10:45:17 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 10:45:17 PM] --- End of inner exception stack trace --- [2/9/2018 10:45:17 PM] [2/9/2018 10:45:17 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 10:45:17 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw to re-import queue. [2/9/2018 10:57:17 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw. [2/9/2018 10:57:17 PM] q180209_EC2_03.raw is ready [2/9/2018 10:57:17 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 10:57:17 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 10:57:20 PM] Opening file... [2/9/2018 10:57:21 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 10:57:21 PM] [2/9/2018 10:57:21 PM] Adding results... [2/9/2018 10:57:21 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 10:57:21 PM] [2/9/2018 10:57:21 PM] Error: Failed importing the results file Importing q180209_EC2_03.raw. [2/9/2018 10:57:21 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw'. [2/9/2018 10:57:21 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 10:57:22 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 10:57:22 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 10:57:22 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 10:57:22 PM] --- End of inner exception stack trace --- [2/9/2018 10:57:22 PM] [2/9/2018 10:57:22 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 10:57:22 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw to re-import queue. [2/9/2018 11:09:22 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw. [2/9/2018 11:09:22 PM] q180209_EC2_03.raw is ready [2/9/2018 11:09:22 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 11:09:22 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 11:09:25 PM] Opening file... [2/9/2018 11:09:26 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 11:09:26 PM] [2/9/2018 11:09:26 PM] Adding results... [2/9/2018 11:09:26 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 11:09:26 PM] [2/9/2018 11:09:26 PM] Error: Failed importing the results file Importing q180209_EC2_03.raw. [2/9/2018 11:09:26 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw'. [2/9/2018 11:09:26 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 11:09:26 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 11:09:26 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 11:09:26 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 11:09:26 PM] --- End of inner exception stack trace --- [2/9/2018 11:09:26 PM] [2/9/2018 11:09:26 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 11:09:26 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw to re-import queue. [2/9/2018 11:21:26 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw. [2/9/2018 11:21:26 PM] q180209_EC2_03.raw is ready [2/9/2018 11:21:26 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 11:21:27 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 11:21:29 PM] Opening file... [2/9/2018 11:21:30 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 11:21:30 PM] [2/9/2018 11:21:30 PM] Adding results... [2/9/2018 11:21:30 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 11:21:30 PM] [2/9/2018 11:21:31 PM] Error: Failed importing the results file Importing q180209_EC2_03.raw. [2/9/2018 11:21:31 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw'. [2/9/2018 11:21:31 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 11:21:31 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 11:21:31 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 11:21:31 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 11:21:31 PM] --- End of inner exception stack trace --- [2/9/2018 11:21:31 PM] [2/9/2018 11:21:31 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 11:21:31 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw to re-import queue. [2/9/2018 11:33:31 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw. [2/9/2018 11:33:31 PM] q180209_EC2_03.raw is ready [2/9/2018 11:33:31 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 11:33:31 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 11:33:34 PM] Opening file... [2/9/2018 11:33:35 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 11:33:35 PM] [2/9/2018 11:33:35 PM] Adding results... [2/9/2018 11:33:35 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 11:33:35 PM] [2/9/2018 11:33:35 PM] Error: Failed importing the results file Importing q180209_EC2_03.raw. [2/9/2018 11:33:35 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw'. [2/9/2018 11:33:35 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 11:33:35 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 11:33:35 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 11:33:35 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 11:33:35 PM] --- End of inner exception stack trace --- [2/9/2018 11:33:35 PM] [2/9/2018 11:33:35 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 11:33:35 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw to re-import queue. [2/9/2018 11:45:35 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw. [2/9/2018 11:45:35 PM] q180209_EC2_03.raw is ready [2/9/2018 11:45:35 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 11:45:35 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 11:45:38 PM] Opening file... [2/9/2018 11:45:39 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 11:45:39 PM] [2/9/2018 11:45:39 PM] Adding results... [2/9/2018 11:45:39 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 11:45:39 PM] [2/9/2018 11:45:39 PM] Error: Failed importing the results file Importing q180209_EC2_03.raw. [2/9/2018 11:45:39 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw'. [2/9/2018 11:45:39 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 11:45:39 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 11:45:39 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 11:45:39 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 11:45:40 PM] --- End of inner exception stack trace --- [2/9/2018 11:45:40 PM] [2/9/2018 11:45:40 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 11:45:40 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw to re-import queue. [2/9/2018 11:57:40 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw. [2/9/2018 11:57:40 PM] q180209_EC2_03.raw is ready [2/9/2018 11:57:40 PM] Running SkylineDailyRunner.exe with args: [2/9/2018 11:57:40 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/10/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw" --import-on-or-after=1/10/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/9/2018 11:57:42 PM] Opening file... [2/9/2018 11:57:43 PM] File PRM_EC2_biognosys_template.sky opened. [2/9/2018 11:57:43 PM] [2/9/2018 11:57:43 PM] Adding results... [2/9/2018 11:57:43 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 11:57:44 PM] [2/9/2018 11:57:44 PM] Error: Failed importing the results file Importing q180209_EC2_03.raw. [2/9/2018 11:57:44 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw'. [2/9/2018 11:57:44 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/9/2018 11:57:44 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/9/2018 11:57:44 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/9/2018 11:57:44 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/9/2018 11:57:44 PM] --- End of inner exception stack trace --- [2/9/2018 11:57:44 PM] [2/9/2018 11:57:44 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/9/2018 11:57:44 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw to re-import queue. [2/10/2018 12:08:42 AM] q180209_EC2SS1199i_01.raw added to directory. [2/10/2018 12:08:44 AM] q180209_EC2SS1199i_01.raw is ready [2/10/2018 12:08:44 AM] Running SkylineDailyRunner.exe with args: [2/10/2018 12:08:44 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_01.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 12:08:48 AM] Opening file... [2/10/2018 12:08:48 AM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 12:08:49 AM] [2/10/2018 12:08:49 AM] Adding results... [2/10/2018 12:08:49 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_01.raw [2/10/2018 12:08:49 AM] [2/10/2018 12:08:50 AM] Error: Failed importing the results file Importing q180209_EC2SS1199i_01.raw. [2/10/2018 12:08:50 AM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_01.raw'. [2/10/2018 12:08:50 AM] [read_file_header()] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_01.raw (invalid permission or file locked) ---> System.Exception: [read_file_header()] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_01.raw (invalid permission or file locked) [2/10/2018 12:08:50 AM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/10/2018 12:08:50 AM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/10/2018 12:08:50 AM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/10/2018 12:08:50 AM] --- End of inner exception stack trace --- [2/10/2018 12:08:50 AM] [2/10/2018 12:08:50 AM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/10/2018 12:08:50 AM] Adding q180209_EC2SS1199i_01.raw to re-import queue. [2/10/2018 12:08:50 AM] Waiting for files... [2/10/2018 12:09:45 AM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw. [2/10/2018 12:09:45 AM] q180209_EC2_03.raw is ready [2/10/2018 12:09:45 AM] Running SkylineDailyRunner.exe with args: [2/10/2018 12:09:45 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 12:09:48 AM] Opening file... [2/10/2018 12:09:49 AM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 12:09:49 AM] [2/10/2018 12:09:49 AM] Adding results... [2/10/2018 12:09:49 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2_03.raw [2/10/2018 12:09:49 AM] [2/10/2018 12:09:53 AM] [1] 12% [2/10/2018 12:09:55 AM] [1] 15% [2/10/2018 12:09:57 AM] [1] 18% [2/10/2018 12:10:00 AM] [1] 21% [2/10/2018 12:10:02 AM] [1] 24% [2/10/2018 12:10:04 AM] [1] 27% [2/10/2018 12:10:06 AM] [1] 31% [2/10/2018 12:10:09 AM] [1] 35% [2/10/2018 12:10:11 AM] [1] 39% [2/10/2018 12:10:13 AM] [1] 43% [2/10/2018 12:10:16 AM] [1] 47% [2/10/2018 12:10:18 AM] [1] 51% [2/10/2018 12:10:20 AM] [1] 54% [2/10/2018 12:10:23 AM] [1] 57% [2/10/2018 12:10:25 AM] [1] 60% [2/10/2018 12:10:28 AM] [1] 63% [2/10/2018 12:10:31 AM] [1] 65% [2/10/2018 12:10:33 AM] [1] 66% [2/10/2018 12:10:35 AM] [1] 68% [2/10/2018 12:10:37 AM] [2/10/2018 12:10:37 AM] Updating peak statistics [2/10/2018 12:10:38 AM] Joining file C:\Skyline\data\QC\q180209_EC2_03_1916799047.raw.skyd [2/10/2018 12:10:38 AM] Removing results before 1/11/2018... [2/10/2018 12:10:38 AM] Removed C:\Xcalibur\data\2018\EC2\q180109_EC2SZ1111c_03.raw. [2/10/2018 12:10:38 AM] Saving file... [2/10/2018 12:10:39 AM] File PRM_EC2_biognosys_template.sky saved. [2/10/2018 12:10:39 AM] Loading PRM_EC2_biognosys_template.skyd cache [2/10/2018 12:10:39 AM] Updating peak statistics [2/10/2018 12:10:43 AM] Uploaded 312.00 KB of 75.75 MB [2/10/2018 12:10:45 AM] Uploaded 920.00 KB of 75.75 MB [2/10/2018 12:10:47 AM] 1% - Uploaded 1.73 MB of 75.75 MB [2/10/2018 12:10:49 AM] Uploaded 2.90 MB of 75.75 MB [2/10/2018 12:10:51 AM] 2% - Uploaded 4.35 MB of 75.75 MB [2/10/2018 12:10:53 AM] 3% - Uploaded 6.04 MB of 75.75 MB [2/10/2018 12:10:55 AM] 5% - Uploaded 7.73 MB of 75.75 MB [2/10/2018 12:10:57 AM] 6% - Uploaded 9.41 MB of 75.75 MB [2/10/2018 12:10:59 AM] 7% - Uploaded 11.10 MB of 75.75 MB [2/10/2018 12:11:01 AM] 8% - Uploaded 12.79 MB of 75.75 MB [2/10/2018 12:11:03 AM] 9% - Uploaded 14.48 MB of 75.75 MB [2/10/2018 12:11:05 AM] 10% - Uploaded 16.13 MB of 75.75 MB [2/10/2018 12:11:07 AM] 11% - Uploaded 17.79 MB of 75.75 MB [2/10/2018 12:11:09 AM] 12% - Uploaded 19.48 MB of 75.75 MB [2/10/2018 12:11:11 AM] 13% - Uploaded 21.16 MB of 75.75 MB [2/10/2018 12:11:13 AM] 15% - Uploaded 22.85 MB of 75.75 MB [2/10/2018 12:11:15 AM] 16% - Uploaded 24.52 MB of 75.75 MB [2/10/2018 12:11:17 AM] 17% - Uploaded 26.18 MB of 75.75 MB [2/10/2018 12:11:19 AM] 18% - Uploaded 27.85 MB of 75.75 MB [2/10/2018 12:11:21 AM] 19% - Uploaded 29.54 MB of 75.75 MB [2/10/2018 12:11:23 AM] 20% - Uploaded 31.23 MB of 75.75 MB [2/10/2018 12:11:25 AM] 21% - Uploaded 32.91 MB of 75.75 MB [2/10/2018 12:11:27 AM] 22% - Uploaded 34.54 MB of 75.75 MB [2/10/2018 12:11:29 AM] 23% - Uploaded 36.23 MB of 75.75 MB [2/10/2018 12:11:31 AM] 25% - Uploaded 37.91 MB of 75.75 MB [2/10/2018 12:11:33 AM] 26% - Uploaded 39.60 MB of 75.75 MB [2/10/2018 12:11:35 AM] 27% - Uploaded 41.29 MB of 75.75 MB [2/10/2018 12:11:37 AM] 28% - Uploaded 42.98 MB of 75.75 MB [2/10/2018 12:11:39 AM] 29% - Uploaded 44.66 MB of 75.75 MB [2/10/2018 12:11:41 AM] 30% - Uploaded 46.35 MB of 75.75 MB [2/10/2018 12:11:43 AM] 31% - Uploaded 48.04 MB of 75.75 MB [2/10/2018 12:11:45 AM] 32% - Uploaded 49.73 MB of 75.75 MB [2/10/2018 12:11:47 AM] 33% - Uploaded 51.41 MB of 75.75 MB [2/10/2018 12:11:49 AM] 35% - Uploaded 53.10 MB of 75.75 MB [2/10/2018 12:11:51 AM] 36% - Uploaded 54.79 MB of 75.75 MB [2/10/2018 12:11:53 AM] 37% - Uploaded 56.48 MB of 75.75 MB [2/10/2018 12:11:55 AM] 38% - Uploaded 58.16 MB of 75.75 MB [2/10/2018 12:11:57 AM] 39% - Uploaded 59.85 MB of 75.75 MB [2/10/2018 12:11:59 AM] 40% - Uploaded 61.54 MB of 75.75 MB [2/10/2018 12:12:01 AM] 41% - Uploaded 63.16 MB of 75.75 MB [2/10/2018 12:12:03 AM] 42% - Uploaded 64.85 MB of 75.75 MB [2/10/2018 12:12:05 AM] 43% - Uploaded 66.54 MB of 75.75 MB [2/10/2018 12:12:07 AM] 45% - Uploaded 68.23 MB of 75.75 MB [2/10/2018 12:12:09 AM] 46% - Uploaded 69.91 MB of 75.75 MB [2/10/2018 12:12:11 AM] 47% - Uploaded 71.60 MB of 75.75 MB [2/10/2018 12:12:13 AM] 48% - Uploaded 73.23 MB of 75.75 MB [2/10/2018 12:12:15 AM] 49% - Uploaded 74.91 MB of 75.75 MB [2/10/2018 12:12:16 AM] 100% - Uploaded 75.75 MB of 75.75 MB [2/10/2018 12:12:17 AM] Unknown error attempting to publish to Panorama. [2/10/2018 12:12:17 AM] File was not uploaded to the server. Please try again, or if the problem persists, please contact your Panorama server administrator. [2/10/2018 12:12:17 AM] The remote server returned an error: (404) Not Found. [2/10/2018 12:12:17 AM] SkylineDailyRunner.exe exited successfully. [2/10/2018 12:20:52 AM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_01.raw. [2/10/2018 12:20:52 AM] q180209_EC2SS1199i_01.raw is ready [2/10/2018 12:20:52 AM] Running SkylineDailyRunner.exe with args: [2/10/2018 12:20:52 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_01.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 12:20:55 AM] Opening file... [2/10/2018 12:20:56 AM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 12:20:56 AM] [2/10/2018 12:20:56 AM] Adding results... [2/10/2018 12:20:56 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_01.raw [2/10/2018 12:20:56 AM] [2/10/2018 12:21:01 AM] [1] 13% [2/10/2018 12:21:03 AM] [1] 16% [2/10/2018 12:21:05 AM] [1] 19% [2/10/2018 12:21:08 AM] [1] 22% [2/10/2018 12:21:10 AM] [1] 25% [2/10/2018 12:21:12 AM] [1] 28% [2/10/2018 12:21:15 AM] [1] 32% [2/10/2018 12:21:17 AM] [1] 36% [2/10/2018 12:21:20 AM] [1] 40% [2/10/2018 12:21:22 AM] [1] 44% [2/10/2018 12:21:25 AM] [1] 48% [2/10/2018 12:21:27 AM] [1] 52% [2/10/2018 12:21:29 AM] [1] 55% [2/10/2018 12:21:31 AM] [1] 57% [2/10/2018 12:21:34 AM] [1] 60% [2/10/2018 12:21:37 AM] [1] 63% [2/10/2018 12:21:39 AM] [1] 65% [2/10/2018 12:21:41 AM] [1] 66% [2/10/2018 12:21:44 AM] [1] 68% [2/10/2018 12:21:46 AM] [2/10/2018 12:21:46 AM] Updating peak statistics [2/10/2018 12:21:46 AM] Joining file C:\Skyline\data\QC\q180209_EC2SS1199i_01_1916799047.raw.skyd [2/10/2018 12:21:46 AM] Removing results before 1/11/2018... [2/10/2018 12:21:46 AM] Saving file... [2/10/2018 12:21:46 AM] File PRM_EC2_biognosys_template.sky saved. [2/10/2018 12:21:50 AM] Uploaded 312.00 KB of 76.46 MB [2/10/2018 12:21:52 AM] Uploaded 936.00 KB of 76.46 MB [2/10/2018 12:21:54 AM] 1% - Uploaded 1.79 MB of 76.46 MB [2/10/2018 12:21:56 AM] Uploaded 2.91 MB of 76.46 MB [2/10/2018 12:21:58 AM] 2% - Uploaded 4.29 MB of 76.46 MB [2/10/2018 12:22:01 AM] 3% - Uploaded 5.91 MB of 76.46 MB [2/10/2018 12:22:03 AM] 4% - Uploaded 7.60 MB of 76.46 MB [2/10/2018 12:22:05 AM] 6% - Uploaded 9.26 MB of 76.46 MB [2/10/2018 12:22:07 AM] 7% - Uploaded 10.91 MB of 76.46 MB [2/10/2018 12:22:09 AM] 8% - Uploaded 12.60 MB of 76.46 MB [2/10/2018 12:22:11 AM] 9% - Uploaded 14.29 MB of 76.46 MB [2/10/2018 12:22:13 AM] 10% - Uploaded 15.98 MB of 76.46 MB [2/10/2018 12:22:15 AM] 11% - Uploaded 17.66 MB of 76.46 MB [2/10/2018 12:22:17 AM] 12% - Uploaded 19.35 MB of 76.46 MB [2/10/2018 12:22:19 AM] 13% - Uploaded 21.04 MB of 76.46 MB [2/10/2018 12:22:21 AM] 14% - Uploaded 22.73 MB of 76.46 MB [2/10/2018 12:22:23 AM] 15% - Uploaded 24.41 MB of 76.46 MB [2/10/2018 12:22:25 AM] 17% - Uploaded 26.10 MB of 76.46 MB [2/10/2018 12:22:27 AM] 18% - Uploaded 27.79 MB of 76.46 MB [2/10/2018 12:22:29 AM] 19% - Uploaded 29.48 MB of 76.46 MB [2/10/2018 12:22:31 AM] 20% - Uploaded 31.16 MB of 76.46 MB [2/10/2018 12:22:33 AM] 21% - Uploaded 32.85 MB of 76.46 MB [2/10/2018 12:22:35 AM] 22% - Uploaded 34.54 MB of 76.46 MB [2/10/2018 12:22:37 AM] 23% - Uploaded 36.23 MB of 76.46 MB [2/10/2018 12:22:39 AM] 24% - Uploaded 37.91 MB of 76.46 MB [2/10/2018 12:22:41 AM] 25% - Uploaded 39.60 MB of 76.46 MB [2/10/2018 12:22:43 AM] 26% - Uploaded 41.29 MB of 76.46 MB [2/10/2018 12:22:45 AM] 28% - Uploaded 42.98 MB of 76.46 MB [2/10/2018 12:22:47 AM] 29% - Uploaded 44.66 MB of 76.46 MB [2/10/2018 12:22:49 AM] 30% - Uploaded 46.35 MB of 76.46 MB [2/10/2018 12:22:51 AM] 31% - Uploaded 48.04 MB of 76.46 MB [2/10/2018 12:22:53 AM] 32% - Uploaded 49.73 MB of 76.46 MB [2/10/2018 12:22:55 AM] 33% - Uploaded 51.41 MB of 76.46 MB [2/10/2018 12:22:57 AM] 34% - Uploaded 53.10 MB of 76.46 MB [2/10/2018 12:22:59 AM] 35% - Uploaded 54.79 MB of 76.46 MB [2/10/2018 12:23:01 AM] 36% - Uploaded 56.48 MB of 76.46 MB [2/10/2018 12:23:03 AM] 38% - Uploaded 58.16 MB of 76.46 MB [2/10/2018 12:23:05 AM] 39% - Uploaded 59.85 MB of 76.46 MB [2/10/2018 12:23:07 AM] 40% - Uploaded 61.54 MB of 76.46 MB [2/10/2018 12:23:09 AM] 41% - Uploaded 63.23 MB of 76.46 MB [2/10/2018 12:23:12 AM] 42% - Uploaded 64.91 MB of 76.46 MB [2/10/2018 12:23:14 AM] 43% - Uploaded 66.60 MB of 76.46 MB [2/10/2018 12:23:16 AM] 44% - Uploaded 68.29 MB of 76.46 MB [2/10/2018 12:23:18 AM] 45% - Uploaded 69.98 MB of 76.46 MB [2/10/2018 12:23:20 AM] 46% - Uploaded 71.66 MB of 76.46 MB [2/10/2018 12:23:22 AM] 47% - Uploaded 73.35 MB of 76.46 MB [2/10/2018 12:23:24 AM] 49% - Uploaded 75.04 MB of 76.46 MB [2/10/2018 12:23:26 AM] 100% - Uploaded 76.46 MB of 76.46 MB [2/10/2018 12:23:26 AM] Unknown error attempting to publish to Panorama. [2/10/2018 12:23:26 AM] File was not uploaded to the server. Please try again, or if the problem persists, please contact your Panorama server administrator. [2/10/2018 12:23:26 AM] The remote server returned an error: (404) Not Found. [2/10/2018 12:23:26 AM] SkylineDailyRunner.exe exited successfully. [2/10/2018 12:08:29 PM] q180209_EC2SS1199i_02.raw added to directory. [2/10/2018 12:08:32 PM] q180209_EC2SS1199i_02.raw is ready [2/10/2018 12:08:32 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 12:08:32 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 12:08:35 PM] Opening file... [2/10/2018 12:08:37 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 12:08:37 PM] [2/10/2018 12:08:37 PM] Adding results... [2/10/2018 12:08:37 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02.raw [2/10/2018 12:08:37 PM] [2/10/2018 12:08:38 PM] Error: Failed importing the results file Importing q180209_EC2SS1199i_02.raw. [2/10/2018 12:08:38 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02.raw'. [2/10/2018 12:08:38 PM] [read_file_header()] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02.raw (invalid permission or file locked) ---> System.Exception: [read_file_header()] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02.raw (invalid permission or file locked) [2/10/2018 12:08:38 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/10/2018 12:08:38 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/10/2018 12:08:38 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/10/2018 12:08:38 PM] --- End of inner exception stack trace --- [2/10/2018 12:08:38 PM] [2/10/2018 12:08:38 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/10/2018 12:08:38 PM] Adding q180209_EC2SS1199i_02.raw to re-import queue. [2/10/2018 12:08:38 PM] Waiting for files... [2/10/2018 12:08:57 PM] q180209_EC2SS1199i_02_180210120627.raw added to directory. [2/10/2018 12:08:58 PM] q180209_EC2SS1199i_02_180210120627.raw is ready [2/10/2018 12:08:58 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 12:08:58 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 12:09:01 PM] Opening file... [2/10/2018 12:09:01 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 12:09:02 PM] [2/10/2018 12:09:02 PM] Adding results... [2/10/2018 12:09:02 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 12:09:02 PM] [2/10/2018 12:09:02 PM] Error: Failed importing the results file Importing q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 12:09:02 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw'. [2/10/2018 12:09:02 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 12:09:02 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/10/2018 12:09:02 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/10/2018 12:09:02 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/10/2018 12:09:02 PM] --- End of inner exception stack trace --- [2/10/2018 12:09:02 PM] [2/10/2018 12:09:02 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/10/2018 12:09:02 PM] Adding q180209_EC2SS1199i_02_180210120627.raw to re-import queue. [2/10/2018 12:09:02 PM] Waiting for files... [2/10/2018 12:20:42 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02.raw. [2/10/2018 12:20:42 PM] q180209_EC2SS1199i_02.raw is ready [2/10/2018 12:20:42 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 12:20:42 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 12:20:52 PM] Opening file... [2/10/2018 12:20:52 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 12:20:52 PM] [2/10/2018 12:20:52 PM] Adding results... [2/10/2018 12:20:53 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02.raw [2/10/2018 12:20:53 PM] [2/10/2018 12:20:59 PM] [1] 11% [2/10/2018 12:21:02 PM] [1] 12% [2/10/2018 12:21:06 PM] [1] 14% [2/10/2018 12:21:09 PM] [1] 17% [2/10/2018 12:21:11 PM] [1] 20% [2/10/2018 12:21:14 PM] [1] 23% [2/10/2018 12:21:16 PM] [1] 26% [2/10/2018 12:21:19 PM] [1] 29% [2/10/2018 12:21:21 PM] [1] 32% [2/10/2018 12:21:23 PM] [1] 35% [2/10/2018 12:21:25 PM] [1] 38% [2/10/2018 12:21:27 PM] [1] 41% [2/10/2018 12:21:29 PM] [1] 44% [2/10/2018 12:21:31 PM] [1] 47% [2/10/2018 12:21:33 PM] [1] 50% [2/10/2018 12:21:37 PM] [1] 53% [2/10/2018 12:21:39 PM] [1] 55% [2/10/2018 12:21:42 PM] [1] 57% [2/10/2018 12:21:45 PM] [1] 59% [2/10/2018 12:21:47 PM] [1] 61% [2/10/2018 12:21:50 PM] [1] 62% [2/10/2018 12:21:52 PM] [1] 63% [2/10/2018 12:21:56 PM] [1] 65% [2/10/2018 12:22:00 PM] [1] 66% [2/10/2018 12:22:05 PM] [1] 68% [2/10/2018 12:22:08 PM] [1] 69% [2/10/2018 12:22:09 PM] [2/10/2018 12:22:09 PM] Updating peak statistics [2/10/2018 12:22:10 PM] Joining file C:\Skyline\data\QC\q180209_EC2SS1199i_02_1916799047.raw.skyd [2/10/2018 12:22:10 PM] Removing results before 1/11/2018... [2/10/2018 12:22:10 PM] Saving file... [2/10/2018 12:22:10 PM] File PRM_EC2_biognosys_template.sky saved. [2/10/2018 12:22:14 PM] Uploaded 312.00 KB of 76.97 MB [2/10/2018 12:22:16 PM] Uploaded 872.00 KB of 76.97 MB [2/10/2018 12:22:18 PM] 1% - Uploaded 1.73 MB of 76.97 MB [2/10/2018 12:22:20 PM] Uploaded 2.85 MB of 76.97 MB [2/10/2018 12:22:22 PM] 2% - Uploaded 4.29 MB of 76.97 MB [2/10/2018 12:22:24 PM] 3% - Uploaded 5.98 MB of 76.97 MB [2/10/2018 12:22:26 PM] 4% - Uploaded 7.66 MB of 76.97 MB [2/10/2018 12:22:28 PM] 6% - Uploaded 9.35 MB of 76.97 MB [2/10/2018 12:22:30 PM] 7% - Uploaded 11.04 MB of 76.97 MB [2/10/2018 12:22:32 PM] 8% - Uploaded 12.73 MB of 76.97 MB [2/10/2018 12:22:35 PM] 9% - Uploaded 14.41 MB of 76.97 MB [2/10/2018 12:22:37 PM] 10% - Uploaded 16.04 MB of 76.97 MB [2/10/2018 12:22:39 PM] 11% - Uploaded 17.73 MB of 76.97 MB [2/10/2018 12:22:41 PM] 12% - Uploaded 19.41 MB of 76.97 MB [2/10/2018 12:22:43 PM] 13% - Uploaded 21.10 MB of 76.97 MB [2/10/2018 12:22:45 PM] 14% - Uploaded 22.79 MB of 76.97 MB [2/10/2018 12:22:47 PM] 15% - Uploaded 24.48 MB of 76.97 MB [2/10/2018 12:22:49 PM] 16% - Uploaded 26.16 MB of 76.97 MB [2/10/2018 12:22:51 PM] 18% - Uploaded 27.85 MB of 76.97 MB [2/10/2018 12:22:53 PM] 19% - Uploaded 29.54 MB of 76.97 MB [2/10/2018 12:22:55 PM] 20% - Uploaded 31.23 MB of 76.97 MB [2/10/2018 12:22:57 PM] 21% - Uploaded 32.91 MB of 76.97 MB [2/10/2018 12:22:59 PM] 22% - Uploaded 34.60 MB of 76.97 MB [2/10/2018 12:23:01 PM] 23% - Uploaded 36.29 MB of 76.97 MB [2/10/2018 12:23:03 PM] 24% - Uploaded 37.98 MB of 76.97 MB [2/10/2018 12:23:05 PM] 25% - Uploaded 39.66 MB of 76.97 MB [2/10/2018 12:23:07 PM] 26% - Uploaded 41.29 MB of 76.97 MB [2/10/2018 12:23:09 PM] 27% - Uploaded 42.98 MB of 76.97 MB [2/10/2018 12:23:11 PM] 29% - Uploaded 44.66 MB of 76.97 MB [2/10/2018 12:23:13 PM] 30% - Uploaded 46.35 MB of 76.97 MB [2/10/2018 12:23:15 PM] 31% - Uploaded 48.04 MB of 76.97 MB [2/10/2018 12:23:17 PM] 32% - Uploaded 49.66 MB of 76.97 MB [2/10/2018 12:23:19 PM] 33% - Uploaded 51.35 MB of 76.97 MB [2/10/2018 12:23:21 PM] 34% - Uploaded 53.04 MB of 76.97 MB [2/10/2018 12:23:23 PM] 35% - Uploaded 54.73 MB of 76.97 MB [2/10/2018 12:23:25 PM] 36% - Uploaded 56.41 MB of 76.97 MB [2/10/2018 12:23:27 PM] 37% - Uploaded 58.10 MB of 76.97 MB [2/10/2018 12:23:29 PM] 38% - Uploaded 59.73 MB of 76.97 MB [2/10/2018 12:23:31 PM] 39% - Uploaded 61.41 MB of 76.97 MB [2/10/2018 12:23:33 PM] 40% - Uploaded 63.10 MB of 76.97 MB [2/10/2018 12:23:35 PM] 42% - Uploaded 64.79 MB of 76.97 MB [2/10/2018 12:23:37 PM] 43% - Uploaded 66.48 MB of 76.97 MB [2/10/2018 12:23:39 PM] 44% - Uploaded 68.10 MB of 76.97 MB [2/10/2018 12:23:41 PM] 45% - Uploaded 69.79 MB of 76.97 MB [2/10/2018 12:23:43 PM] 46% - Uploaded 71.48 MB of 76.97 MB [2/10/2018 12:23:45 PM] 47% - Uploaded 73.16 MB of 76.97 MB [2/10/2018 12:23:47 PM] 48% - Uploaded 74.85 MB of 76.97 MB [2/10/2018 12:23:49 PM] 49% - Uploaded 76.54 MB of 76.97 MB [2/10/2018 12:23:50 PM] 100% - Uploaded 76.97 MB of 76.97 MB [2/10/2018 12:23:51 PM] Unknown error attempting to publish to Panorama. [2/10/2018 12:23:51 PM] File was not uploaded to the server. Please try again, or if the problem persists, please contact your Panorama server administrator. [2/10/2018 12:23:51 PM] The remote server returned an error: (404) Not Found. [2/10/2018 12:23:51 PM] SkylineDailyRunner.exe exited successfully. [2/10/2018 12:23:51 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 12:23:51 PM] q180209_EC2SS1199i_02_180210120627.raw is ready [2/10/2018 12:23:51 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 12:23:51 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 12:23:54 PM] Opening file... [2/10/2018 12:23:54 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 12:23:55 PM] [2/10/2018 12:23:55 PM] Adding results... [2/10/2018 12:23:55 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 12:23:55 PM] [2/10/2018 12:23:55 PM] Error: Failed importing the results file Importing q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 12:23:55 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw'. [2/10/2018 12:23:55 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 12:23:55 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/10/2018 12:23:55 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/10/2018 12:23:55 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/10/2018 12:23:55 PM] --- End of inner exception stack trace --- [2/10/2018 12:23:55 PM] [2/10/2018 12:23:55 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/10/2018 12:23:55 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw to re-import queue. [2/10/2018 12:35:55 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 12:35:55 PM] q180209_EC2SS1199i_02_180210120627.raw is ready [2/10/2018 12:35:55 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 12:35:55 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 12:35:58 PM] Opening file... [2/10/2018 12:35:59 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 12:35:59 PM] [2/10/2018 12:35:59 PM] Adding results... [2/10/2018 12:35:59 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 12:35:59 PM] [2/10/2018 12:35:59 PM] Error: Failed importing the results file Importing q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 12:35:59 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw'. [2/10/2018 12:35:59 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 12:35:59 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/10/2018 12:35:59 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/10/2018 12:35:59 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/10/2018 12:35:59 PM] --- End of inner exception stack trace --- [2/10/2018 12:35:59 PM] [2/10/2018 12:35:59 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/10/2018 12:35:59 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw to re-import queue. [2/10/2018 12:47:59 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 12:47:59 PM] q180209_EC2SS1199i_02_180210120627.raw is ready [2/10/2018 12:48:00 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 12:48:00 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 12:48:02 PM] Opening file... [2/10/2018 12:48:03 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 12:48:03 PM] [2/10/2018 12:48:03 PM] Adding results... [2/10/2018 12:48:03 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 12:48:03 PM] [2/10/2018 12:48:04 PM] Error: Failed importing the results file Importing q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 12:48:04 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw'. [2/10/2018 12:48:04 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 12:48:04 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/10/2018 12:48:04 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/10/2018 12:48:04 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/10/2018 12:48:04 PM] --- End of inner exception stack trace --- [2/10/2018 12:48:04 PM] [2/10/2018 12:48:04 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/10/2018 12:48:04 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw to re-import queue. [2/10/2018 1:00:04 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 1:00:04 PM] q180209_EC2SS1199i_02_180210120627.raw is ready [2/10/2018 1:00:04 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 1:00:04 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 1:00:07 PM] Opening file... [2/10/2018 1:00:07 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 1:00:08 PM] [2/10/2018 1:00:08 PM] Adding results... [2/10/2018 1:00:08 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 1:00:08 PM] [2/10/2018 1:00:08 PM] Error: Failed importing the results file Importing q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 1:00:08 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw'. [2/10/2018 1:00:08 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 1:00:08 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/10/2018 1:00:08 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/10/2018 1:00:08 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/10/2018 1:00:08 PM] --- End of inner exception stack trace --- [2/10/2018 1:00:08 PM] [2/10/2018 1:00:08 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/10/2018 1:00:08 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw to re-import queue. [2/10/2018 1:12:08 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 1:12:08 PM] q180209_EC2SS1199i_02_180210120627.raw is ready [2/10/2018 1:12:08 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 1:12:08 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 1:12:11 PM] Opening file... [2/10/2018 1:12:12 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 1:12:12 PM] [2/10/2018 1:12:12 PM] Adding results... [2/10/2018 1:12:12 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 1:12:12 PM] [2/10/2018 1:12:12 PM] Error: Failed importing the results file Importing q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 1:12:12 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw'. [2/10/2018 1:12:12 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 1:12:12 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/10/2018 1:12:12 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/10/2018 1:12:12 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/10/2018 1:12:12 PM] --- End of inner exception stack trace --- [2/10/2018 1:12:12 PM] [2/10/2018 1:12:12 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/10/2018 1:12:12 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw to re-import queue. [2/10/2018 1:24:12 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 1:24:13 PM] q180209_EC2SS1199i_02_180210120627.raw is ready [2/10/2018 1:24:13 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 1:24:13 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 1:24:15 PM] Opening file... [2/10/2018 1:24:16 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 1:24:16 PM] [2/10/2018 1:24:16 PM] Adding results... [2/10/2018 1:24:16 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 1:24:16 PM] [2/10/2018 1:24:17 PM] Error: Failed importing the results file Importing q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 1:24:17 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw'. [2/10/2018 1:24:17 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 1:24:17 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/10/2018 1:24:17 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/10/2018 1:24:17 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/10/2018 1:24:17 PM] --- End of inner exception stack trace --- [2/10/2018 1:24:17 PM] [2/10/2018 1:24:17 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/10/2018 1:24:17 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw to re-import queue. [2/10/2018 1:36:17 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 1:36:17 PM] q180209_EC2SS1199i_02_180210120627.raw is ready [2/10/2018 1:36:17 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 1:36:17 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 1:36:20 PM] Opening file... [2/10/2018 1:36:20 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 1:36:21 PM] [2/10/2018 1:36:21 PM] Adding results... [2/10/2018 1:36:21 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 1:36:21 PM] [2/10/2018 1:36:21 PM] Error: Failed importing the results file Importing q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 1:36:21 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw'. [2/10/2018 1:36:21 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 1:36:21 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/10/2018 1:36:21 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/10/2018 1:36:21 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/10/2018 1:36:21 PM] --- End of inner exception stack trace --- [2/10/2018 1:36:21 PM] [2/10/2018 1:36:21 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/10/2018 1:36:21 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw to re-import queue. [2/10/2018 1:48:21 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 1:48:21 PM] q180209_EC2SS1199i_02_180210120627.raw is ready [2/10/2018 1:48:21 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 1:48:21 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 1:48:24 PM] Opening file... [2/10/2018 1:48:25 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 1:48:25 PM] [2/10/2018 1:48:25 PM] Adding results... [2/10/2018 1:48:25 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 1:48:25 PM] [2/10/2018 1:48:25 PM] Error: Failed importing the results file Importing q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 1:48:25 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw'. [2/10/2018 1:48:25 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 1:48:25 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/10/2018 1:48:26 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/10/2018 1:48:26 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/10/2018 1:48:26 PM] --- End of inner exception stack trace --- [2/10/2018 1:48:26 PM] [2/10/2018 1:48:26 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/10/2018 1:48:26 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw to re-import queue. [2/10/2018 2:00:26 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 2:00:26 PM] q180209_EC2SS1199i_02_180210120627.raw is ready [2/10/2018 2:00:26 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 2:00:26 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 2:00:28 PM] Opening file... [2/10/2018 2:00:29 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 2:00:29 PM] [2/10/2018 2:00:29 PM] Adding results... [2/10/2018 2:00:30 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 2:00:30 PM] [2/10/2018 2:00:30 PM] Error: Failed importing the results file Importing q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 2:00:30 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw'. [2/10/2018 2:00:30 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 2:00:30 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/10/2018 2:00:30 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/10/2018 2:00:30 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/10/2018 2:00:30 PM] --- End of inner exception stack trace --- [2/10/2018 2:00:30 PM] [2/10/2018 2:00:30 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/10/2018 2:00:30 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw to re-import queue. [2/10/2018 2:12:30 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 2:12:30 PM] q180209_EC2SS1199i_02_180210120627.raw is ready [2/10/2018 2:12:30 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 2:12:30 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 2:12:33 PM] Opening file... [2/10/2018 2:12:34 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 2:12:34 PM] [2/10/2018 2:12:34 PM] Adding results... [2/10/2018 2:12:34 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 2:12:34 PM] [2/10/2018 2:12:34 PM] Error: Failed importing the results file Importing q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 2:12:34 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw'. [2/10/2018 2:12:34 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 2:12:34 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/10/2018 2:12:34 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/10/2018 2:12:34 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/10/2018 2:12:34 PM] --- End of inner exception stack trace --- [2/10/2018 2:12:34 PM] [2/10/2018 2:12:34 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/10/2018 2:12:34 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw to re-import queue. [2/10/2018 2:24:34 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 2:24:34 PM] q180209_EC2SS1199i_02_180210120627.raw is ready [2/10/2018 2:24:34 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 2:24:34 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 2:24:38 PM] Opening file... [2/10/2018 2:24:38 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 2:24:39 PM] [2/10/2018 2:24:39 PM] Adding results... [2/10/2018 2:24:39 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 2:24:39 PM] [2/10/2018 2:24:39 PM] Error: Failed importing the results file Importing q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 2:24:39 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw'. [2/10/2018 2:24:39 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 2:24:39 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/10/2018 2:24:39 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/10/2018 2:24:39 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/10/2018 2:24:39 PM] --- End of inner exception stack trace --- [2/10/2018 2:24:39 PM] [2/10/2018 2:24:39 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/10/2018 2:24:39 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw to re-import queue. [2/10/2018 2:36:39 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 2:36:39 PM] q180209_EC2SS1199i_02_180210120627.raw is ready [2/10/2018 2:36:39 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 2:36:39 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 2:36:42 PM] Opening file... [2/10/2018 2:36:43 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 2:36:43 PM] [2/10/2018 2:36:43 PM] Adding results... [2/10/2018 2:36:43 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 2:36:43 PM] [2/10/2018 2:36:43 PM] Error: Failed importing the results file Importing q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 2:36:43 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw'. [2/10/2018 2:36:43 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 2:36:43 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/10/2018 2:36:43 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/10/2018 2:36:43 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/10/2018 2:36:44 PM] --- End of inner exception stack trace --- [2/10/2018 2:36:44 PM] [2/10/2018 2:36:44 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/10/2018 2:36:44 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw to re-import queue. [2/10/2018 2:48:44 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 2:48:44 PM] q180209_EC2SS1199i_02_180210120627.raw is ready [2/10/2018 2:48:44 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 2:48:44 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 2:48:46 PM] Opening file... [2/10/2018 2:48:47 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 2:48:47 PM] [2/10/2018 2:48:47 PM] Adding results... [2/10/2018 2:48:47 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 2:48:48 PM] [2/10/2018 2:48:48 PM] Error: Failed importing the results file Importing q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 2:48:48 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw'. [2/10/2018 2:48:48 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 2:48:48 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/10/2018 2:48:48 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/10/2018 2:48:48 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/10/2018 2:48:48 PM] --- End of inner exception stack trace --- [2/10/2018 2:48:48 PM] [2/10/2018 2:48:48 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/10/2018 2:48:48 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw to re-import queue. [2/10/2018 3:00:48 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 3:00:48 PM] q180209_EC2SS1199i_02_180210120627.raw is ready [2/10/2018 3:00:48 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 3:00:48 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 3:00:51 PM] Opening file... [2/10/2018 3:00:52 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 3:00:52 PM] [2/10/2018 3:00:52 PM] Adding results... [2/10/2018 3:00:52 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 3:00:52 PM] [2/10/2018 3:00:52 PM] Error: Failed importing the results file Importing q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 3:00:52 PM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw'. [2/10/2018 3:00:52 PM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 3:00:52 PM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/10/2018 3:00:52 PM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/10/2018 3:00:52 PM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/10/2018 3:00:52 PM] --- End of inner exception stack trace --- [2/10/2018 3:00:52 PM] [2/10/2018 3:00:52 PM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/10/2018 3:00:52 PM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw to re-import queue. [2/10/2018 3:12:53 PM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw. [2/10/2018 3:12:53 PM] q180209_EC2SS1199i_02_180210120627.raw is ready [2/10/2018 3:12:53 PM] Running SkylineDailyRunner.exe with args: [2/10/2018 3:12:53 PM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/11/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw" --import-on-or-after=1/11/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/10/2018 3:12:55 PM] Opening file... [2/10/2018 3:12:56 PM] File PRM_EC2_biognosys_template.sky opened. [2/10/2018 3:12:56 PM] [2/10/2018 3:12:56 PM] Adding results... [2/10/2018 3:12:56 PM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_02_180210120627.raw [2/10/2018 3:12:57 PM] [2/10/2018 3:13:01 PM] [1] 14% [2/10/2018 3:13:04 PM] [1] 18% [2/10/2018 3:13:06 PM] [1] 22% [2/10/2018 3:13:08 PM] [1] 25% [2/10/2018 3:13:11 PM] [1] 28% [2/10/2018 3:13:13 PM] [1] 31% [2/10/2018 3:13:15 PM] [1] 34% [2/10/2018 3:13:17 PM] [1] 38% [2/10/2018 3:13:19 PM] [1] 41% [2/10/2018 3:13:22 PM] [1] 45% [2/10/2018 3:13:24 PM] [1] 48% [2/10/2018 3:13:26 PM] [1] 51% [2/10/2018 3:13:29 PM] [1] 54% [2/10/2018 3:13:31 PM] [1] 56% [2/10/2018 3:13:33 PM] [1] 58% [2/10/2018 3:13:37 PM] [1] 60% [2/10/2018 3:13:40 PM] [1] 62% [2/10/2018 3:13:43 PM] [1] 63% [2/10/2018 3:13:48 PM] [1] 65% [2/10/2018 3:13:52 PM] [1] 66% [2/10/2018 3:13:55 PM] [1] 68% [2/10/2018 3:13:58 PM] [2/10/2018 3:13:58 PM] Updating peak statistics [2/10/2018 3:13:58 PM] Joining file C:\Skyline\data\QC\q180209_EC2SS1199i_02_180210120627_1916799047.raw.skyd [2/10/2018 3:13:58 PM] Removing results before 1/11/2018... [2/10/2018 3:13:58 PM] Saving file... [2/10/2018 3:13:58 PM] File PRM_EC2_biognosys_template.sky saved. [2/10/2018 3:14:02 PM] Uploaded 312.00 KB of 77.57 MB [2/10/2018 3:14:04 PM] Uploaded 872.00 KB of 77.57 MB [2/10/2018 3:14:06 PM] 1% - Uploaded 1.73 MB of 77.57 MB [2/10/2018 3:14:08 PM] Uploaded 2.85 MB of 77.57 MB [2/10/2018 3:14:10 PM] 2% - Uploaded 4.16 MB of 77.57 MB [2/10/2018 3:14:12 PM] 3% - Uploaded 5.79 MB of 77.57 MB [2/10/2018 3:14:14 PM] 4% - Uploaded 7.48 MB of 77.57 MB [2/10/2018 3:14:16 PM] 5% - Uploaded 9.14 MB of 77.57 MB [2/10/2018 3:14:18 PM] 6% - Uploaded 10.73 MB of 77.57 MB [2/10/2018 3:14:20 PM] 7% - Uploaded 12.41 MB of 77.57 MB [2/10/2018 3:14:22 PM] 9% - Uploaded 14.04 MB of 77.57 MB [2/10/2018 3:14:24 PM] 10% - Uploaded 15.74 MB of 77.57 MB [2/10/2018 3:14:26 PM] 11% - Uploaded 17.41 MB of 77.57 MB [2/10/2018 3:14:28 PM] 12% - Uploaded 19.05 MB of 77.57 MB [2/10/2018 3:14:30 PM] 13% - Uploaded 20.78 MB of 77.57 MB [2/10/2018 3:14:32 PM] 14% - Uploaded 22.47 MB of 77.57 MB [2/10/2018 3:14:34 PM] 15% - Uploaded 24.16 MB of 77.57 MB [2/10/2018 3:14:36 PM] 16% - Uploaded 25.84 MB of 77.57 MB [2/10/2018 3:14:39 PM] 17% - Uploaded 27.53 MB of 77.57 MB [2/10/2018 3:14:41 PM] 18% - Uploaded 29.22 MB of 77.57 MB [2/10/2018 3:14:43 PM] 19% - Uploaded 30.91 MB of 77.57 MB [2/10/2018 3:14:45 PM] 21% - Uploaded 32.59 MB of 77.57 MB [2/10/2018 3:14:47 PM] 22% - Uploaded 34.28 MB of 77.57 MB [2/10/2018 3:14:49 PM] 23% - Uploaded 35.97 MB of 77.57 MB [2/10/2018 3:14:51 PM] 24% - Uploaded 37.59 MB of 77.57 MB [2/10/2018 3:14:53 PM] 25% - Uploaded 39.28 MB of 77.57 MB [2/10/2018 3:14:55 PM] 26% - Uploaded 40.97 MB of 77.57 MB [2/10/2018 3:14:57 PM] 27% - Uploaded 42.66 MB of 77.57 MB [2/10/2018 3:14:59 PM] 28% - Uploaded 44.34 MB of 77.57 MB [2/10/2018 3:15:01 PM] 29% - Uploaded 46.03 MB of 77.57 MB [2/10/2018 3:15:03 PM] 30% - Uploaded 47.72 MB of 77.57 MB [2/10/2018 3:15:05 PM] 31% - Uploaded 49.34 MB of 77.57 MB [2/10/2018 3:15:07 PM] 32% - Uploaded 51.03 MB of 77.57 MB [2/10/2018 3:15:09 PM] 33% - Uploaded 52.72 MB of 77.57 MB [2/10/2018 3:15:11 PM] 35% - Uploaded 54.41 MB of 77.57 MB [2/10/2018 3:15:13 PM] 36% - Uploaded 56.09 MB of 77.57 MB [2/10/2018 3:15:15 PM] 37% - Uploaded 57.77 MB of 77.57 MB [2/10/2018 3:15:17 PM] 38% - Uploaded 59.35 MB of 77.57 MB [2/10/2018 3:15:19 PM] 39% - Uploaded 61.04 MB of 77.57 MB [2/10/2018 3:15:21 PM] 40% - Uploaded 62.72 MB of 77.57 MB [2/10/2018 3:15:23 PM] 41% - Uploaded 64.41 MB of 77.57 MB [2/10/2018 3:15:25 PM] 42% - Uploaded 66.09 MB of 77.57 MB [2/10/2018 3:15:27 PM] 43% - Uploaded 67.78 MB of 77.57 MB [2/10/2018 3:15:29 PM] 44% - Uploaded 69.47 MB of 77.57 MB [2/10/2018 3:15:31 PM] 45% - Uploaded 71.16 MB of 77.57 MB [2/10/2018 3:15:33 PM] 46% - Uploaded 72.84 MB of 77.57 MB [2/10/2018 3:15:35 PM] 48% - Uploaded 74.53 MB of 77.57 MB [2/10/2018 3:15:37 PM] 49% - Uploaded 76.22 MB of 77.57 MB [2/10/2018 3:15:39 PM] 100% - Uploaded 77.57 MB of 77.57 MB [2/10/2018 3:15:40 PM] Unknown error attempting to publish to Panorama. [2/10/2018 3:15:40 PM] File was not uploaded to the server. Please try again, or if the problem persists, please contact your Panorama server administrator. [2/10/2018 3:15:40 PM] The remote server returned an error: (404) Not Found. [2/10/2018 3:15:40 PM] SkylineDailyRunner.exe exited successfully. [2/11/2018 3:08:29 AM] q180209_EC2SS1199i_05.raw added to directory. [2/11/2018 3:08:30 AM] q180209_EC2SS1199i_05.raw is ready [2/11/2018 3:08:30 AM] Running SkylineDailyRunner.exe with args: [2/11/2018 3:08:30 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/12/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw" --import-on-or-after=1/12/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/11/2018 3:08:34 AM] Opening file... [2/11/2018 3:08:35 AM] File PRM_EC2_biognosys_template.sky opened. [2/11/2018 3:08:35 AM] [2/11/2018 3:08:35 AM] Adding results... [2/11/2018 3:08:35 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 3:08:35 AM] [2/11/2018 3:08:35 AM] Error: Failed importing the results file Importing q180209_EC2SS1199i_05.raw. [2/11/2018 3:08:35 AM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw'. [2/11/2018 3:08:35 AM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 3:08:35 AM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/11/2018 3:08:36 AM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/11/2018 3:08:36 AM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/11/2018 3:08:36 AM] --- End of inner exception stack trace --- [2/11/2018 3:08:36 AM] [2/11/2018 3:08:36 AM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/11/2018 3:08:36 AM] Adding q180209_EC2SS1199i_05.raw to re-import queue. [2/11/2018 3:08:36 AM] Waiting for files... [2/11/2018 3:20:36 AM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw. [2/11/2018 3:20:36 AM] q180209_EC2SS1199i_05.raw is ready [2/11/2018 3:20:36 AM] Running SkylineDailyRunner.exe with args: [2/11/2018 3:20:36 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/12/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw" --import-on-or-after=1/12/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/11/2018 3:20:39 AM] Opening file... [2/11/2018 3:20:39 AM] File PRM_EC2_biognosys_template.sky opened. [2/11/2018 3:20:39 AM] [2/11/2018 3:20:40 AM] Adding results... [2/11/2018 3:20:40 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 3:20:40 AM] [2/11/2018 3:20:40 AM] Error: Failed importing the results file Importing q180209_EC2SS1199i_05.raw. [2/11/2018 3:20:40 AM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw'. [2/11/2018 3:20:40 AM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 3:20:40 AM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/11/2018 3:20:40 AM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/11/2018 3:20:40 AM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/11/2018 3:20:40 AM] --- End of inner exception stack trace --- [2/11/2018 3:20:40 AM] [2/11/2018 3:20:40 AM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/11/2018 3:20:40 AM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw to re-import queue. [2/11/2018 3:32:40 AM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw. [2/11/2018 3:32:40 AM] q180209_EC2SS1199i_05.raw is ready [2/11/2018 3:32:40 AM] Running SkylineDailyRunner.exe with args: [2/11/2018 3:32:40 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/12/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw" --import-on-or-after=1/12/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/11/2018 3:32:43 AM] Opening file... [2/11/2018 3:32:44 AM] File PRM_EC2_biognosys_template.sky opened. [2/11/2018 3:32:44 AM] [2/11/2018 3:32:44 AM] Adding results... [2/11/2018 3:32:44 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 3:32:44 AM] [2/11/2018 3:32:44 AM] Error: Failed importing the results file Importing q180209_EC2SS1199i_05.raw. [2/11/2018 3:32:44 AM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw'. [2/11/2018 3:32:44 AM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 3:32:44 AM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/11/2018 3:32:45 AM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/11/2018 3:32:45 AM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/11/2018 3:32:45 AM] --- End of inner exception stack trace --- [2/11/2018 3:32:45 AM] [2/11/2018 3:32:45 AM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/11/2018 3:32:45 AM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw to re-import queue. [2/11/2018 3:44:45 AM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw. [2/11/2018 3:44:45 AM] q180209_EC2SS1199i_05.raw is ready [2/11/2018 3:44:45 AM] Running SkylineDailyRunner.exe with args: [2/11/2018 3:44:45 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/12/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw" --import-on-or-after=1/12/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/11/2018 3:44:48 AM] Opening file... [2/11/2018 3:44:48 AM] File PRM_EC2_biognosys_template.sky opened. [2/11/2018 3:44:49 AM] [2/11/2018 3:44:49 AM] Adding results... [2/11/2018 3:44:49 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 3:44:49 AM] [2/11/2018 3:44:49 AM] Error: Failed importing the results file Importing q180209_EC2SS1199i_05.raw. [2/11/2018 3:44:49 AM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw'. [2/11/2018 3:44:49 AM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 3:44:49 AM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/11/2018 3:44:49 AM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/11/2018 3:44:49 AM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/11/2018 3:44:49 AM] --- End of inner exception stack trace --- [2/11/2018 3:44:49 AM] [2/11/2018 3:44:49 AM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/11/2018 3:44:49 AM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw to re-import queue. [2/11/2018 3:56:49 AM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw. [2/11/2018 3:56:49 AM] q180209_EC2SS1199i_05.raw is ready [2/11/2018 3:56:49 AM] Running SkylineDailyRunner.exe with args: [2/11/2018 3:56:49 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/12/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw" --import-on-or-after=1/12/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/11/2018 3:56:52 AM] Opening file... [2/11/2018 3:56:53 AM] File PRM_EC2_biognosys_template.sky opened. [2/11/2018 3:56:53 AM] [2/11/2018 3:56:53 AM] Adding results... [2/11/2018 3:56:53 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 3:56:53 AM] [2/11/2018 3:56:54 AM] Error: Failed importing the results file Importing q180209_EC2SS1199i_05.raw. [2/11/2018 3:56:54 AM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw'. [2/11/2018 3:56:54 AM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 3:56:54 AM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/11/2018 3:56:54 AM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/11/2018 3:56:54 AM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/11/2018 3:56:54 AM] --- End of inner exception stack trace --- [2/11/2018 3:56:54 AM] [2/11/2018 3:56:54 AM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/11/2018 3:56:54 AM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw to re-import queue. [2/11/2018 4:08:54 AM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw. [2/11/2018 4:08:54 AM] q180209_EC2SS1199i_05.raw is ready [2/11/2018 4:08:54 AM] Running SkylineDailyRunner.exe with args: [2/11/2018 4:08:54 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/12/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw" --import-on-or-after=1/12/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/11/2018 4:08:57 AM] Opening file... [2/11/2018 4:08:58 AM] File PRM_EC2_biognosys_template.sky opened. [2/11/2018 4:08:58 AM] [2/11/2018 4:08:58 AM] Adding results... [2/11/2018 4:08:58 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 4:08:58 AM] [2/11/2018 4:08:58 AM] Error: Failed importing the results file Importing q180209_EC2SS1199i_05.raw. [2/11/2018 4:08:58 AM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw'. [2/11/2018 4:08:58 AM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 4:08:58 AM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/11/2018 4:08:58 AM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/11/2018 4:08:58 AM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/11/2018 4:08:58 AM] --- End of inner exception stack trace --- [2/11/2018 4:08:58 AM] [2/11/2018 4:08:58 AM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/11/2018 4:08:58 AM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw to re-import queue. [2/11/2018 4:20:59 AM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw. [2/11/2018 4:20:59 AM] q180209_EC2SS1199i_05.raw is ready [2/11/2018 4:20:59 AM] Running SkylineDailyRunner.exe with args: [2/11/2018 4:20:59 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/12/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw" --import-on-or-after=1/12/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/11/2018 4:21:02 AM] Opening file... [2/11/2018 4:21:03 AM] File PRM_EC2_biognosys_template.sky opened. [2/11/2018 4:21:03 AM] [2/11/2018 4:21:03 AM] Adding results... [2/11/2018 4:21:03 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 4:21:03 AM] [2/11/2018 4:21:03 AM] Error: Failed importing the results file Importing q180209_EC2SS1199i_05.raw. [2/11/2018 4:21:03 AM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw'. [2/11/2018 4:21:03 AM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 4:21:03 AM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/11/2018 4:21:03 AM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/11/2018 4:21:03 AM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/11/2018 4:21:03 AM] --- End of inner exception stack trace --- [2/11/2018 4:21:03 AM] [2/11/2018 4:21:03 AM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/11/2018 4:21:03 AM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw to re-import queue. [2/11/2018 4:33:03 AM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw. [2/11/2018 4:33:03 AM] q180209_EC2SS1199i_05.raw is ready [2/11/2018 4:33:03 AM] Running SkylineDailyRunner.exe with args: [2/11/2018 4:33:03 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/12/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw" --import-on-or-after=1/12/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/11/2018 4:33:06 AM] Opening file... [2/11/2018 4:33:07 AM] File PRM_EC2_biognosys_template.sky opened. [2/11/2018 4:33:07 AM] [2/11/2018 4:33:07 AM] Adding results... [2/11/2018 4:33:07 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 4:33:07 AM] [2/11/2018 4:33:07 AM] Error: Failed importing the results file Importing q180209_EC2SS1199i_05.raw. [2/11/2018 4:33:07 AM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw'. [2/11/2018 4:33:07 AM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 4:33:08 AM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/11/2018 4:33:08 AM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/11/2018 4:33:08 AM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/11/2018 4:33:08 AM] --- End of inner exception stack trace --- [2/11/2018 4:33:08 AM] [2/11/2018 4:33:08 AM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/11/2018 4:33:08 AM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw to re-import queue. [2/11/2018 4:45:08 AM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw. [2/11/2018 4:45:08 AM] q180209_EC2SS1199i_05.raw is ready [2/11/2018 4:45:08 AM] Running SkylineDailyRunner.exe with args: [2/11/2018 4:45:08 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/12/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw" --import-on-or-after=1/12/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/11/2018 4:45:11 AM] Opening file... [2/11/2018 4:45:12 AM] File PRM_EC2_biognosys_template.sky opened. [2/11/2018 4:45:12 AM] [2/11/2018 4:45:12 AM] Adding results... [2/11/2018 4:45:12 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 4:45:12 AM] [2/11/2018 4:45:12 AM] Error: Failed importing the results file Importing q180209_EC2SS1199i_05.raw. [2/11/2018 4:45:12 AM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw'. [2/11/2018 4:45:12 AM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 4:45:12 AM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/11/2018 4:45:12 AM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/11/2018 4:45:12 AM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/11/2018 4:45:12 AM] --- End of inner exception stack trace --- [2/11/2018 4:45:12 AM] [2/11/2018 4:45:12 AM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/11/2018 4:45:12 AM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw to re-import queue. [2/11/2018 4:57:12 AM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw. [2/11/2018 4:57:12 AM] q180209_EC2SS1199i_05.raw is ready [2/11/2018 4:57:12 AM] Running SkylineDailyRunner.exe with args: [2/11/2018 4:57:12 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/12/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw" --import-on-or-after=1/12/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/11/2018 4:57:15 AM] Opening file... [2/11/2018 4:57:16 AM] File PRM_EC2_biognosys_template.sky opened. [2/11/2018 4:57:16 AM] [2/11/2018 4:57:16 AM] Adding results... [2/11/2018 4:57:16 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 4:57:16 AM] [2/11/2018 4:57:16 AM] Error: Failed importing the results file Importing q180209_EC2SS1199i_05.raw. [2/11/2018 4:57:16 AM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw'. [2/11/2018 4:57:17 AM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 4:57:17 AM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/11/2018 4:57:17 AM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/11/2018 4:57:17 AM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/11/2018 4:57:17 AM] --- End of inner exception stack trace --- [2/11/2018 4:57:17 AM] [2/11/2018 4:57:17 AM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/11/2018 4:57:17 AM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw to re-import queue. [2/11/2018 5:09:17 AM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw. [2/11/2018 5:09:17 AM] q180209_EC2SS1199i_05.raw is ready [2/11/2018 5:09:17 AM] Running SkylineDailyRunner.exe with args: [2/11/2018 5:09:17 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/12/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw" --import-on-or-after=1/12/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/11/2018 5:09:20 AM] Opening file... [2/11/2018 5:09:20 AM] File PRM_EC2_biognosys_template.sky opened. [2/11/2018 5:09:21 AM] [2/11/2018 5:09:21 AM] Adding results... [2/11/2018 5:09:21 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 5:09:21 AM] [2/11/2018 5:09:21 AM] Error: Failed importing the results file Importing q180209_EC2SS1199i_05.raw. [2/11/2018 5:09:21 AM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw'. [2/11/2018 5:09:21 AM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 5:09:21 AM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/11/2018 5:09:21 AM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/11/2018 5:09:21 AM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/11/2018 5:09:21 AM] --- End of inner exception stack trace --- [2/11/2018 5:09:21 AM] [2/11/2018 5:09:21 AM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/11/2018 5:09:21 AM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw to re-import queue. [2/11/2018 5:21:21 AM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw. [2/11/2018 5:21:21 AM] q180209_EC2SS1199i_05.raw is ready [2/11/2018 5:21:21 AM] Running SkylineDailyRunner.exe with args: [2/11/2018 5:21:21 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/12/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw" --import-on-or-after=1/12/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/11/2018 5:21:24 AM] Opening file... [2/11/2018 5:21:25 AM] File PRM_EC2_biognosys_template.sky opened. [2/11/2018 5:21:25 AM] [2/11/2018 5:21:25 AM] Adding results... [2/11/2018 5:21:25 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 5:21:25 AM] [2/11/2018 5:21:25 AM] Error: Failed importing the results file Importing q180209_EC2SS1199i_05.raw. [2/11/2018 5:21:25 AM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw'. [2/11/2018 5:21:25 AM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 5:21:25 AM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/11/2018 5:21:25 AM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/11/2018 5:21:25 AM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/11/2018 5:21:25 AM] --- End of inner exception stack trace --- [2/11/2018 5:21:25 AM] [2/11/2018 5:21:25 AM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/11/2018 5:21:25 AM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw to re-import queue. [2/11/2018 5:33:25 AM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw. [2/11/2018 5:33:25 AM] q180209_EC2SS1199i_05.raw is ready [2/11/2018 5:33:26 AM] Running SkylineDailyRunner.exe with args: [2/11/2018 5:33:26 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/12/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw" --import-on-or-after=1/12/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/11/2018 5:33:29 AM] Opening file... [2/11/2018 5:33:29 AM] File PRM_EC2_biognosys_template.sky opened. [2/11/2018 5:33:29 AM] [2/11/2018 5:33:29 AM] Adding results... [2/11/2018 5:33:30 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 5:33:30 AM] [2/11/2018 5:33:30 AM] Error: Failed importing the results file Importing q180209_EC2SS1199i_05.raw. [2/11/2018 5:33:30 AM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw'. [2/11/2018 5:33:30 AM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 5:33:30 AM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/11/2018 5:33:30 AM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/11/2018 5:33:30 AM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/11/2018 5:33:30 AM] --- End of inner exception stack trace --- [2/11/2018 5:33:30 AM] [2/11/2018 5:33:30 AM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/11/2018 5:33:30 AM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw to re-import queue. [2/11/2018 5:45:30 AM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw. [2/11/2018 5:45:30 AM] q180209_EC2SS1199i_05.raw is ready [2/11/2018 5:45:30 AM] Running SkylineDailyRunner.exe with args: [2/11/2018 5:45:30 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/12/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw" --import-on-or-after=1/12/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/11/2018 5:45:33 AM] Opening file... [2/11/2018 5:45:34 AM] File PRM_EC2_biognosys_template.sky opened. [2/11/2018 5:45:34 AM] [2/11/2018 5:45:34 AM] Adding results... [2/11/2018 5:45:34 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 5:45:34 AM] [2/11/2018 5:45:34 AM] Error: Failed importing the results file Importing q180209_EC2SS1199i_05.raw. [2/11/2018 5:45:34 AM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw'. [2/11/2018 5:45:34 AM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 5:45:34 AM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/11/2018 5:45:34 AM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/11/2018 5:45:34 AM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/11/2018 5:45:34 AM] --- End of inner exception stack trace --- [2/11/2018 5:45:34 AM] [2/11/2018 5:45:34 AM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/11/2018 5:45:34 AM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw to re-import queue. [2/11/2018 5:57:34 AM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw. [2/11/2018 5:57:34 AM] q180209_EC2SS1199i_05.raw is ready [2/11/2018 5:57:34 AM] Running SkylineDailyRunner.exe with args: [2/11/2018 5:57:34 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/12/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw" --import-on-or-after=1/12/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/11/2018 5:57:37 AM] Opening file... [2/11/2018 5:57:38 AM] File PRM_EC2_biognosys_template.sky opened. [2/11/2018 5:57:38 AM] [2/11/2018 5:57:38 AM] Adding results... [2/11/2018 5:57:38 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 5:57:38 AM] [2/11/2018 5:57:38 AM] Error: Failed importing the results file Importing q180209_EC2SS1199i_05.raw. [2/11/2018 5:57:38 AM] Message: pwiz.Skyline.Model.Results.ChromCacheBuildException: Failed importing results file 'C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw'. [2/11/2018 5:57:39 AM] [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw ---> System.Exception: [ThermoRawFile] [RawFile::ctor] Unable to open file C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 5:57:39 AM] at pwiz.CLI.msdata.ReaderList.read(String filename, MSData result, Int32 runIndex, ReaderConfig config) [2/11/2018 5:57:39 AM] at pwiz.ProteowizardWrapper.MsDataFileImpl..ctor(String path, Int32 sampleIndex, LockMassParameters lockmassParameters, Boolean simAsSpectra, Boolean srmAsSpectra, Boolean acceptZeroLengthSpectra, Boolean requireVendorCentroidedMS1, Boolean requireVendorCentroidedMS2, Boolean ignoreZeroIntensityPoints) in c:\proj\pwiz_x64\pwiz_tools\Shared\ProteowizardWrapper\MsDataFileImpl.cs:line 140 [2/11/2018 5:57:39 AM] at pwiz.Skyline.Model.Results.ChromCacheBuilder.BuildCache() in c:\proj\pwiz_x64\pwiz_tools\Skyline\Model\Results\ChromCacheBuilder.cs:line 197 [2/11/2018 5:57:39 AM] --- End of inner exception stack trace --- [2/11/2018 5:57:39 AM] [2/11/2018 5:57:39 AM] ERROR: SkylineDailyRunner.exe exited with code 0. Skyline document import failed. [2/11/2018 5:57:39 AM] Adding C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw to re-import queue. [2/11/2018 6:09:39 AM] Attempting to re-import C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw. [2/11/2018 6:09:39 AM] q180209_EC2SS1199i_05.raw is ready [2/11/2018 6:09:39 AM] Running SkylineDailyRunner.exe with args: [2/11/2018 6:09:39 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/12/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw" --import-on-or-after=1/12/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/11/2018 6:09:42 AM] Opening file... [2/11/2018 6:09:43 AM] File PRM_EC2_biognosys_template.sky opened. [2/11/2018 6:09:43 AM] [2/11/2018 6:09:43 AM] Adding results... [2/11/2018 6:09:43 AM] 1. C:\Xcalibur\data\2018\EC2\q180209_EC2SS1199i_05.raw [2/11/2018 6:09:43 AM] [2/11/2018 6:09:48 AM] [1] 12% [2/11/2018 6:09:51 AM] [1] 15% [2/11/2018 6:09:53 AM] [1] 18% [2/11/2018 6:09:56 AM] [1] 21% [2/11/2018 6:09:58 AM] [1] 24% [2/11/2018 6:10:00 AM] [1] 27% [2/11/2018 6:10:02 AM] [1] 30% [2/11/2018 6:10:04 AM] [1] 33% [2/11/2018 6:10:07 AM] [1] 37% [2/11/2018 6:10:09 AM] [1] 40% [2/11/2018 6:10:11 AM] [1] 43% [2/11/2018 6:10:13 AM] [1] 46% [2/11/2018 6:10:15 AM] [1] 49% [2/11/2018 6:10:17 AM] [1] 52% [2/11/2018 6:10:20 AM] [1] 54% [2/11/2018 6:10:22 AM] [1] 56% [2/11/2018 6:10:24 AM] [1] 58% [2/11/2018 6:10:27 AM] [1] 60% [2/11/2018 6:10:30 AM] [1] 62% [2/11/2018 6:10:33 AM] [1] 63% [2/11/2018 6:10:39 AM] [1] 65% [2/11/2018 6:10:44 AM] [1] 66% [2/11/2018 6:10:46 AM] [1] 67% [2/11/2018 6:10:49 AM] [1] 68% [2/11/2018 6:10:52 AM] [1] 69% [2/11/2018 6:10:53 AM] [2/11/2018 6:10:53 AM] Updating peak statistics [2/11/2018 6:10:54 AM] Joining file C:\Skyline\data\QC\q180209_EC2SS1199i_05_1916799047.raw.skyd [2/11/2018 6:10:54 AM] Removing results before 1/12/2018... [2/11/2018 6:10:54 AM] Removed C:\Xcalibur\data\2018\EC2\q180109_EC2SZ1111c_04.raw. [2/11/2018 6:10:54 AM] Saving file... [2/11/2018 6:10:55 AM] File PRM_EC2_biognosys_template.sky saved. [2/11/2018 6:10:55 AM] Loading PRM_EC2_biognosys_template.skyd cache [2/11/2018 6:10:55 AM] Updating peak statistics [2/11/2018 6:10:59 AM] Uploaded 312.00 KB of 77.61 MB [2/11/2018 6:11:01 AM] Uploaded 872.00 KB of 77.61 MB [2/11/2018 6:11:03 AM] Uploaded 1.54 MB of 77.61 MB [2/11/2018 6:11:05 AM] 1% - Uploaded 2.10 MB of 77.61 MB [2/11/2018 6:11:07 AM] Uploaded 2.91 MB of 77.61 MB [2/11/2018 6:11:09 AM] 2% - Uploaded 3.91 MB of 77.61 MB [2/11/2018 6:11:11 AM] 3% - Uploaded 5.16 MB of 77.61 MB [2/11/2018 6:11:13 AM] 4% - Uploaded 6.67 MB of 77.61 MB [2/11/2018 6:11:15 AM] 5% - Uploaded 8.36 MB of 77.61 MB [2/11/2018 6:11:17 AM] 6% - Uploaded 10.04 MB of 77.61 MB [2/11/2018 6:11:19 AM] 7% - Uploaded 11.72 MB of 77.61 MB [2/11/2018 6:11:21 AM] 8% - Uploaded 13.35 MB of 77.61 MB [2/11/2018 6:11:23 AM] 9% - Uploaded 15.04 MB of 77.61 MB [2/11/2018 6:11:25 AM] 10% - Uploaded 16.66 MB of 77.61 MB [2/11/2018 6:11:27 AM] 11% - Uploaded 18.35 MB of 77.61 MB [2/11/2018 6:11:29 AM] 12% - Uploaded 20.04 MB of 77.61 MB [2/11/2018 6:11:31 AM] 13% - Uploaded 21.73 MB of 77.61 MB [2/11/2018 6:11:33 AM] 15% - Uploaded 23.41 MB of 77.61 MB [2/11/2018 6:11:35 AM] 16% - Uploaded 25.10 MB of 77.61 MB [2/11/2018 6:11:37 AM] 17% - Uploaded 26.73 MB of 77.61 MB [2/11/2018 6:11:39 AM] 18% - Uploaded 28.41 MB of 77.61 MB [2/11/2018 6:11:41 AM] 19% - Uploaded 30.10 MB of 77.61 MB [2/11/2018 6:11:43 AM] 20% - Uploaded 31.79 MB of 77.61 MB [2/11/2018 6:11:45 AM] 21% - Uploaded 33.48 MB of 77.61 MB [2/11/2018 6:11:47 AM] 22% - Uploaded 35.16 MB of 77.61 MB [2/11/2018 6:11:49 AM] 23% - Uploaded 36.85 MB of 77.61 MB [2/11/2018 6:11:51 AM] 24% - Uploaded 38.54 MB of 77.61 MB [2/11/2018 6:11:53 AM] 25% - Uploaded 40.23 MB of 77.61 MB [2/11/2018 6:11:55 AM] 26% - Uploaded 41.89 MB of 77.61 MB [2/11/2018 6:11:57 AM] 28% - Uploaded 43.54 MB of 77.61 MB [2/11/2018 6:11:59 AM] 29% - Uploaded 45.23 MB of 77.61 MB [2/11/2018 6:12:01 AM] 30% - Uploaded 46.91 MB of 77.61 MB [2/11/2018 6:12:03 AM] 31% - Uploaded 48.60 MB of 77.61 MB [2/11/2018 6:12:05 AM] 32% - Uploaded 50.27 MB of 77.61 MB [2/11/2018 6:12:07 AM] 33% - Uploaded 51.91 MB of 77.61 MB [2/11/2018 6:12:10 AM] 34% - Uploaded 53.60 MB of 77.61 MB [2/11/2018 6:12:12 AM] 35% - Uploaded 55.29 MB of 77.61 MB [2/11/2018 6:12:14 AM] 36% - Uploaded 56.98 MB of 77.61 MB [2/11/2018 6:12:16 AM] 37% - Uploaded 58.66 MB of 77.61 MB [2/11/2018 6:12:18 AM] 38% - Uploaded 60.35 MB of 77.61 MB [2/11/2018 6:12:20 AM] 39% - Uploaded 62.04 MB of 77.61 MB [2/11/2018 6:12:22 AM] 41% - Uploaded 63.73 MB of 77.61 MB [2/11/2018 6:12:24 AM] 42% - Uploaded 65.41 MB of 77.61 MB [2/11/2018 6:12:26 AM] 43% - Uploaded 67.10 MB of 77.61 MB [2/11/2018 6:12:28 AM] 44% - Uploaded 68.79 MB of 77.61 MB [2/11/2018 6:12:30 AM] 45% - Uploaded 70.48 MB of 77.61 MB [2/11/2018 6:12:32 AM] 46% - Uploaded 72.16 MB of 77.61 MB [2/11/2018 6:12:34 AM] 47% - Uploaded 73.85 MB of 77.61 MB [2/11/2018 6:12:36 AM] 48% - Uploaded 75.54 MB of 77.61 MB [2/11/2018 6:12:38 AM] 49% - Uploaded 77.23 MB of 77.61 MB [2/11/2018 6:12:39 AM] 100% - Uploaded 77.61 MB of 77.61 MB [2/11/2018 6:12:39 AM] Unknown error attempting to publish to Panorama. [2/11/2018 6:12:39 AM] File was not uploaded to the server. Please try again, or if the problem persists, please contact your Panorama server administrator. [2/11/2018 6:12:39 AM] The remote server returned an error: (404) Not Found. [2/11/2018 6:12:39 AM] SkylineDailyRunner.exe exited successfully. [2/11/2018 9:08:29 AM] q180211_EC2SS1199i_01.raw added to directory. [2/11/2018 9:08:29 AM] q180211_EC2SS1199i_01.raw is ready [2/11/2018 9:08:30 AM] Running SkylineDailyRunner.exe with args: [2/11/2018 9:08:30 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/12/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180211_EC2SS1199i_01.raw" --import-on-or-after=1/12/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/11/2018 9:08:33 AM] Opening file... [2/11/2018 9:08:33 AM] File PRM_EC2_biognosys_template.sky opened. [2/11/2018 9:08:34 AM] [2/11/2018 9:08:34 AM] Adding results... [2/11/2018 9:08:34 AM] 1. C:\Xcalibur\data\2018\EC2\q180211_EC2SS1199i_01.raw [2/11/2018 9:08:34 AM] [2/11/2018 9:08:41 AM] [1] 12% [2/11/2018 9:08:43 AM] [1] 14% [2/11/2018 9:08:46 AM] [1] 16% [2/11/2018 9:08:48 AM] [1] 18% [2/11/2018 9:08:51 AM] [1] 21% [2/11/2018 9:08:54 AM] [1] 24% [2/11/2018 9:08:57 AM] [1] 27% [2/11/2018 9:08:59 AM] [1] 30% [2/11/2018 9:09:01 AM] [1] 33% [2/11/2018 9:09:03 AM] [1] 36% [2/11/2018 9:09:05 AM] [1] 39% [2/11/2018 9:09:08 AM] [1] 42% [2/11/2018 9:09:10 AM] [1] 45% [2/11/2018 9:09:12 AM] [1] 48% [2/11/2018 9:09:14 AM] [1] 51% [2/11/2018 9:09:17 AM] [1] 54% [2/11/2018 9:09:19 AM] [1] 56% [2/11/2018 9:09:21 AM] [1] 58% [2/11/2018 9:09:24 AM] [1] 60% [2/11/2018 9:09:27 AM] [1] 62% [2/11/2018 9:09:30 AM] [1] 63% [2/11/2018 9:09:36 AM] [1] 65% [2/11/2018 9:09:40 AM] [1] 66% [2/11/2018 9:09:45 AM] [1] 68% [2/11/2018 9:09:47 AM] [1] 69% [2/11/2018 9:09:49 AM] [2/11/2018 9:09:49 AM] Updating peak statistics [2/11/2018 9:09:49 AM] Joining file C:\Skyline\data\QC\q180211_EC2SS1199i_01_1916799047.raw.skyd [2/11/2018 9:09:49 AM] Removing results before 1/12/2018... [2/11/2018 9:09:49 AM] Saving file... [2/11/2018 9:09:49 AM] File PRM_EC2_biognosys_template.sky saved. [2/11/2018 9:09:53 AM] Uploaded 368.00 KB of 78.12 MB [2/11/2018 9:09:55 AM] Uploaded 1,000.00 KB of 78.12 MB [2/11/2018 9:09:57 AM] 1% - Uploaded 1.85 MB of 78.12 MB [2/11/2018 9:09:59 AM] Uploaded 2.98 MB of 78.12 MB [2/11/2018 9:10:01 AM] 2% - Uploaded 4.29 MB of 78.12 MB [2/11/2018 9:10:03 AM] 3% - Uploaded 5.87 MB of 78.12 MB [2/11/2018 9:10:05 AM] 4% - Uploaded 7.54 MB of 78.12 MB [2/11/2018 9:10:07 AM] 5% - Uploaded 9.23 MB of 78.12 MB [2/11/2018 9:10:09 AM] 6% - Uploaded 10.89 MB of 78.12 MB [2/11/2018 9:10:11 AM] 8% - Uploaded 12.54 MB of 78.12 MB [2/11/2018 9:10:13 AM] 9% - Uploaded 14.21 MB of 78.12 MB [2/11/2018 9:10:15 AM] 10% - Uploaded 15.85 MB of 78.12 MB [2/11/2018 9:10:17 AM] 11% - Uploaded 17.54 MB of 78.12 MB [2/11/2018 9:10:19 AM] 12% - Uploaded 19.23 MB of 78.12 MB [2/11/2018 9:10:21 AM] 13% - Uploaded 20.91 MB of 78.12 MB [2/11/2018 9:10:23 AM] 14% - Uploaded 22.60 MB of 78.12 MB [2/11/2018 9:10:25 AM] 15% - Uploaded 24.27 MB of 78.12 MB [2/11/2018 9:10:27 AM] 16% - Uploaded 25.91 MB of 78.12 MB [2/11/2018 9:10:29 AM] 17% - Uploaded 27.60 MB of 78.12 MB [2/11/2018 9:10:31 AM] 18% - Uploaded 29.29 MB of 78.12 MB [2/11/2018 9:10:34 AM] 19% - Uploaded 30.98 MB of 78.12 MB [2/11/2018 9:10:36 AM] 20% - Uploaded 32.64 MB of 78.12 MB [2/11/2018 9:10:38 AM] 21% - Uploaded 34.29 MB of 78.12 MB [2/11/2018 9:10:40 AM] 22% - Uploaded 35.91 MB of 78.12 MB [2/11/2018 9:10:42 AM] 24% - Uploaded 37.60 MB of 78.12 MB [2/11/2018 9:10:44 AM] 25% - Uploaded 39.29 MB of 78.12 MB [2/11/2018 9:10:46 AM] 26% - Uploaded 40.98 MB of 78.12 MB [2/11/2018 9:10:48 AM] 27% - Uploaded 42.66 MB of 78.12 MB [2/11/2018 9:10:50 AM] 28% - Uploaded 44.35 MB of 78.12 MB [2/11/2018 9:10:52 AM] 29% - Uploaded 45.99 MB of 78.12 MB [2/11/2018 9:10:54 AM] 30% - Uploaded 47.66 MB of 78.12 MB [2/11/2018 9:10:56 AM] 31% - Uploaded 49.35 MB of 78.12 MB [2/11/2018 9:10:58 AM] 32% - Uploaded 51.04 MB of 78.12 MB [2/11/2018 9:11:00 AM] 33% - Uploaded 52.73 MB of 78.12 MB [2/11/2018 9:11:02 AM] 34% - Uploaded 54.41 MB of 78.12 MB [2/11/2018 9:11:04 AM] 35% - Uploaded 56.09 MB of 78.12 MB [2/11/2018 9:11:06 AM] 36% - Uploaded 57.73 MB of 78.12 MB [2/11/2018 9:11:08 AM] 38% - Uploaded 59.41 MB of 78.12 MB [2/11/2018 9:11:10 AM] 39% - Uploaded 61.10 MB of 78.12 MB [2/11/2018 9:11:12 AM] 40% - Uploaded 62.78 MB of 78.12 MB [2/11/2018 9:11:14 AM] 41% - Uploaded 64.41 MB of 78.12 MB [2/11/2018 9:11:16 AM] 42% - Uploaded 66.10 MB of 78.12 MB [2/11/2018 9:11:18 AM] 43% - Uploaded 67.79 MB of 78.12 MB [2/11/2018 9:11:20 AM] 44% - Uploaded 69.48 MB of 78.12 MB [2/11/2018 9:11:22 AM] 45% - Uploaded 71.13 MB of 78.12 MB [2/11/2018 9:11:24 AM] 46% - Uploaded 72.79 MB of 78.12 MB [2/11/2018 9:11:26 AM] 47% - Uploaded 74.43 MB of 78.12 MB [2/11/2018 9:11:28 AM] 48% - Uploaded 76.10 MB of 78.12 MB [2/11/2018 9:11:30 AM] 49% - Uploaded 77.79 MB of 78.12 MB [2/11/2018 9:11:31 AM] 100% - Uploaded 78.12 MB of 78.12 MB [2/11/2018 9:11:31 AM] Unknown error attempting to publish to Panorama. [2/11/2018 9:11:31 AM] File was not uploaded to the server. Please try again, or if the problem persists, please contact your Panorama server administrator. [2/11/2018 9:11:32 AM] The remote server returned an error: (404) Not Found. [2/11/2018 9:11:32 AM] SkylineDailyRunner.exe exited successfully. [2/11/2018 9:11:32 AM] Waiting for files... [2/12/2018 12:08:29 AM] q180211_EC2SS1199i_02.raw added to directory. [2/12/2018 12:08:32 AM] q180211_EC2SS1199i_02.raw is ready [2/12/2018 12:08:32 AM] Running SkylineDailyRunner.exe with args: [2/12/2018 12:08:32 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --remove-before=1/13/2018 --import-file="C:\Xcalibur\data\2018\EC2\q180211_EC2SS1199i_02.raw" --import-on-or-after=1/13/2018 --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/12/2018 12:08:37 AM] Opening file... [2/12/2018 12:08:39 AM] File PRM_EC2_biognosys_template.sky opened. [2/12/2018 12:08:39 AM] [2/12/2018 12:08:39 AM] Adding results... [2/12/2018 12:08:40 AM] 1. C:\Xcalibur\data\2018\EC2\q180211_EC2SS1199i_02.raw [2/12/2018 12:08:40 AM] [2/12/2018 12:08:47 AM] [1] 12% [2/12/2018 12:08:49 AM] [1] 14% [2/12/2018 12:08:52 AM] [1] 16% [2/12/2018 12:08:54 AM] [1] 18% [2/12/2018 12:08:57 AM] [1] 20% [2/12/2018 12:09:00 AM] [1] 23% [2/12/2018 12:09:03 AM] [1] 26% [2/12/2018 12:09:05 AM] [1] 29% [2/12/2018 12:09:07 AM] [1] 32% [2/12/2018 12:09:10 AM] [1] 35% [2/12/2018 12:09:13 AM] [1] 38% [2/12/2018 12:09:15 AM] [1] 41% [2/12/2018 12:09:17 AM] [1] 44% [2/12/2018 12:09:19 AM] [1] 47% [2/12/2018 12:09:22 AM] [1] 50% [2/12/2018 12:09:24 AM] [1] 53% [2/12/2018 12:09:27 AM] [1] 56% [2/12/2018 12:09:29 AM] [1] 58% [2/12/2018 12:09:33 AM] [1] 60% [2/12/2018 12:09:35 AM] [1] 62% [2/12/2018 12:09:39 AM] [1] 63% [2/12/2018 12:09:44 AM] [1] 65% [2/12/2018 12:09:48 AM] [1] 66% [2/12/2018 12:09:50 AM] [1] 67% [2/12/2018 12:09:54 AM] [1] 68% [2/12/2018 12:09:57 AM] [1] 69% [2/12/2018 12:09:58 AM] [2/12/2018 12:09:58 AM] Updating peak statistics [2/12/2018 12:09:59 AM] Joining file C:\Skyline\data\QC\q180211_EC2SS1199i_02_1916799047.raw.skyd [2/12/2018 12:09:59 AM] Removing results before 1/13/2018... [2/12/2018 12:09:59 AM] Removed C:\Xcalibur\data\2018\EC2\q180109_EC2SZ1111c_05.raw. [2/12/2018 12:09:59 AM] Removed C:\Xcalibur\data\2018\EC2\q180109_EC2SZ1111c_06.raw. [2/12/2018 12:09:59 AM] Removed C:\Xcalibur\data\2018\EC2\q180112_EC2TB1265_01.raw. [2/12/2018 12:09:59 AM] Removed C:\Xcalibur\data\2018\EC2\q180112_EC2TB1265_02.raw. [2/12/2018 12:09:59 AM] Saving file... [2/12/2018 12:10:00 AM] File PRM_EC2_biognosys_template.sky saved. [2/12/2018 12:10:00 AM] Loading PRM_EC2_biognosys_template.skyd cache [2/12/2018 12:10:00 AM] Updating peak statistics [2/12/2018 12:10:04 AM] Uploaded 312.00 KB of 76.44 MB [2/12/2018 12:10:06 AM] Uploaded 872.00 KB of 76.44 MB [2/12/2018 12:10:08 AM] 1% - Uploaded 1.60 MB of 76.44 MB [2/12/2018 12:10:10 AM] Uploaded 2.54 MB of 76.44 MB [2/12/2018 12:10:12 AM] 2% - Uploaded 3.72 MB of 76.44 MB [2/12/2018 12:10:14 AM] 3% - Uploaded 4.98 MB of 76.44 MB [2/12/2018 12:10:16 AM] 4% - Uploaded 6.54 MB of 76.44 MB [2/12/2018 12:10:18 AM] 5% - Uploaded 8.16 MB of 76.44 MB [2/12/2018 12:10:20 AM] 6% - Uploaded 9.85 MB of 76.44 MB [2/12/2018 12:10:22 AM] 7% - Uploaded 11.48 MB of 76.44 MB [2/12/2018 12:10:24 AM] 8% - Uploaded 13.16 MB of 76.44 MB [2/12/2018 12:10:26 AM] 9% - Uploaded 14.85 MB of 76.44 MB [2/12/2018 12:10:28 AM] 10% - Uploaded 16.54 MB of 76.44 MB [2/12/2018 12:10:30 AM] 11% - Uploaded 18.23 MB of 76.44 MB [2/12/2018 12:10:32 AM] 13% - Uploaded 19.91 MB of 76.44 MB [2/12/2018 12:10:34 AM] 14% - Uploaded 21.54 MB of 76.44 MB [2/12/2018 12:10:36 AM] 15% - Uploaded 23.23 MB of 76.44 MB [2/12/2018 12:10:38 AM] 16% - Uploaded 24.91 MB of 76.44 MB [2/12/2018 12:10:40 AM] 17% - Uploaded 26.60 MB of 76.44 MB [2/12/2018 12:10:42 AM] 18% - Uploaded 28.29 MB of 76.44 MB [2/12/2018 12:10:44 AM] 19% - Uploaded 29.98 MB of 76.44 MB [2/12/2018 12:10:46 AM] 20% - Uploaded 31.60 MB of 76.44 MB [2/12/2018 12:10:48 AM] 21% - Uploaded 33.28 MB of 76.44 MB [2/12/2018 12:10:50 AM] 22% - Uploaded 34.91 MB of 76.44 MB [2/12/2018 12:10:52 AM] 23% - Uploaded 36.60 MB of 76.44 MB [2/12/2018 12:10:54 AM] 25% - Uploaded 38.29 MB of 76.44 MB [2/12/2018 12:10:56 AM] 26% - Uploaded 39.93 MB of 76.44 MB [2/12/2018 12:10:58 AM] 27% - Uploaded 41.60 MB of 76.44 MB [2/12/2018 12:11:00 AM] 28% - Uploaded 43.24 MB of 76.44 MB [2/12/2018 12:11:02 AM] 29% - Uploaded 44.91 MB of 76.44 MB [2/12/2018 12:11:04 AM] 30% - Uploaded 46.60 MB of 76.44 MB [2/12/2018 12:11:06 AM] 31% - Uploaded 48.29 MB of 76.44 MB [2/12/2018 12:11:08 AM] 32% - Uploaded 49.95 MB of 76.44 MB [2/12/2018 12:11:11 AM] 33% - Uploaded 51.60 MB of 76.44 MB [2/12/2018 12:11:13 AM] 34% - Uploaded 53.23 MB of 76.44 MB [2/12/2018 12:11:15 AM] 35% - Uploaded 54.91 MB of 76.44 MB [2/12/2018 12:11:17 AM] 36% - Uploaded 56.56 MB of 76.44 MB [2/12/2018 12:11:19 AM] 38% - Uploaded 58.23 MB of 76.44 MB [2/12/2018 12:11:21 AM] 39% - Uploaded 59.91 MB of 76.44 MB [2/12/2018 12:11:23 AM] 40% - Uploaded 61.60 MB of 76.44 MB [2/12/2018 12:11:25 AM] 41% - Uploaded 63.29 MB of 76.44 MB [2/12/2018 12:11:27 AM] 42% - Uploaded 64.98 MB of 76.44 MB [2/12/2018 12:11:29 AM] 43% - Uploaded 66.66 MB of 76.44 MB [2/12/2018 12:11:31 AM] 44% - Uploaded 68.35 MB of 76.44 MB [2/12/2018 12:11:33 AM] 45% - Uploaded 70.04 MB of 76.44 MB [2/12/2018 12:11:35 AM] 46% - Uploaded 71.73 MB of 76.44 MB [2/12/2018 12:11:37 AM] 48% - Uploaded 73.41 MB of 76.44 MB [2/12/2018 12:11:39 AM] 49% - Uploaded 75.10 MB of 76.44 MB [2/12/2018 12:11:41 AM] 100% - Uploaded 76.44 MB of 76.44 MB [2/12/2018 12:11:42 AM] Unknown error attempting to publish to Panorama. [2/12/2018 12:11:42 AM] File was not uploaded to the server. Please try again, or if the problem persists, please contact your Panorama server administrator. [2/12/2018 12:11:42 AM] The remote server returned an error: (404) Not Found. [2/12/2018 12:11:42 AM] SkylineDailyRunner.exe exited successfully. [2/12/2018 12:11:42 AM] Waiting for files... [2/12/2018 10:02:15 AM] Logging initialized... Name: QC_QEHF1 Enabled: True Panorama User: fazeliniah@email.chop.edu Created: 11/29/20173:28 PM Modified: 1/18/201811:28 AM Main Settings Skyline file: C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky Folder to watch: C:\Xcalibur\data\2018\EC2 Include subfolders: False Filter Type: All Instrument: Thermo Results window: 31 days Acquisition time: 120 minutes Panorama Settings Panorama server URL: https://panoramaweb.org/ Panorama user email: fazeliniah@email.chop.edu Panorama folder: Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1 [2/12/2018 10:02:17 AM] Getting the acquisition date on the newest file imported into the Skyline document. [2/12/2018 10:02:17 AM] Running SkylineDailyRunner.exe with args: [2/12/2018 10:02:17 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --report-conflict-resolution=overwrite --report-add="C:\Users\QEHFuser\AppData\Local\Apps\2.0\T5A3EBQY.W7Y\TJH34WYO.BWK\auto..tion_e4141a2a22107248_0001.0001_b9326b333da709f8\FileAcquisitionTime.skyr" --report-name="AcquisitionTimes" --report-file="C:\Skyline\data\QC\AcquisitionTimes.csv" [2/12/2018 10:02:18 AM] The name 'AcquisitionTimes' already exists. [2/12/2018 10:02:18 AM] Resolving conflicts by overwriting. [2/12/2018 10:02:18 AM] Success! Imported Reports from FileAcquisitionTime [2/12/2018 10:02:18 AM] Opening file... [2/12/2018 10:02:19 AM] File PRM_EC2_biognosys_template.sky opened. [2/12/2018 10:02:19 AM] Exporting report AcquisitionTimes... [2/12/2018 10:02:19 AM] Report AcquisitionTimes exported successfully to C:\Skyline\data\QC\AcquisitionTimes.csv. [2/12/2018 10:02:19 AM] SkylineDailyRunner.exe exited successfully. [2/12/2018 10:02:19 AM] The most recent acquisition date in the Skyline document is 2/11/2018 9:34:26 PM [2/12/2018 10:02:19 AM] Initializing Panorama pinger... [2/12/2018 10:02:19 AM] Starting configuration... [2/12/2018 10:02:19 AM] Importing existing files... [2/12/2018 10:02:19 AM] Existing files found: 30 [2/12/2018 10:02:19 AM] q180201_EC2HI1276_02.raw was acquired (2/2/2018 12:04:24 AM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180201_EC2HI1276_03.raw was acquired (2/2/2018 6:19:56 AM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180201_EC2SS1201i_01.raw was acquired (2/2/2018 10:30:24 AM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180205_EC2postvent_01.raw was acquired (2/5/2018 4:48:36 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180205_EC2postvent_02.raw was acquired (2/5/2018 5:47:27 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180205_EC2postvent_P2_01.raw was acquired (2/6/2018 1:16:02 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180205_EC2postvent_P2_02.raw was acquired (2/6/2018 3:21:12 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180205_EC2postvent_P2_03.raw was acquired (2/6/2018 5:26:21 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180201_EC2_01.raw was acquired (2/7/2018 12:13:10 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180201_EC2_01_180207121311.raw was acquired (2/7/2018 12:37:02 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180207_EC2_01.raw was acquired (2/7/2018 2:28:47 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180207_EC2_01_180207143138.raw was acquired (2/7/2018 4:36:53 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180207_EC2_02.raw was acquired (2/7/2018 6:42:07 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180205_EC2NY1268_01.raw was acquired (2/7/2018 8:47:30 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180205_EC2NY1268_02.raw was acquired (2/8/2018 3:02:59 AM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180205_EC2NY1268_03.raw was acquired (2/8/2018 9:18:26 AM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180205_EC2NY1268_04.raw was acquired (2/8/2018 3:33:57 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180205_EC2NY1268_05.raw was acquired (2/8/2018 9:49:24 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180205_EC2NY1268_06.raw was acquired (2/9/2018 4:04:53 AM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180205_EC2NY1268_07.raw was acquired (2/9/2018 10:20:22 AM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180205_EC2NY1268_07_180209102022.raw was acquired (2/9/2018 11:30:25 AM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180209_EC2_01.raw was acquired (2/9/2018 5:19:35 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180209_EC2_02.raw was acquired (2/9/2018 7:24:51 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180209_EC2_03.raw was acquired (2/9/2018 9:30:06 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180209_EC2SS1199i_01.raw was acquired (2/9/2018 11:35:20 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180209_EC2SS1199i_02.raw was acquired (2/10/2018 12:06:26 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180209_EC2SS1199i_02_180210120627.raw was acquired (2/10/2018 2:11:41 PM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180209_EC2SS1199i_05.raw was acquired (2/11/2018 4:48:00 AM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180211_EC2SS1199i_01.raw was acquired (2/11/2018 8:58:25 AM) before the acquisition date (2/11/2018 9:34:26 PM) on the last imported file in the Skyline document. Skipping... [2/12/2018 10:02:19 AM] q180211_EC2SS1199i_02.raw is ready [2/12/2018 10:02:19 AM] Running SkylineDailyRunner.exe with args: [2/12/2018 10:02:19 AM] --in="C:\Skyline\data\QC\PRM_EC2_biognosys_template.sky" --import-file="C:\Xcalibur\data\2018\EC2\q180211_EC2SS1199i_02.raw" --import-on-or-after=2/11/2018 9:34:26 PM --save --panorama-server="https://panoramaweb.org/" --panorama-folder="Childrens Hospital Philadelphia – Proteomics Core Facility/QC_QEHF1" --panorama-username="fazeliniah@email.chop.edu" [2/12/2018 10:02:22 AM] Opening file... [2/12/2018 10:02:22 AM] File PRM_EC2_biognosys_template.sky opened. [2/12/2018 10:02:23 AM] Warning: The replicate q180211_EC2SS1199i_02 already exists in the given document and the --import-append option is not specified. The replicate will not be added to the document. [2/12/2018 10:02:23 AM] Saving file... [2/12/2018 10:02:23 AM] File PRM_EC2_biognosys_template.sky saved. [2/12/2018 10:02:23 AM] No new results added. Skipping Panorama import. [2/12/2018 10:02:23 AM] SkylineDailyRunner.exe exited successfully. [2/12/2018 10:02:23 AM] Finished importing existing files... [2/12/2018 10:02:23 AM] Importing new files... [2/12/2018 10:02:23 AM] Waiting for files...