MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments.
Authors: Matthew J. Rardin, Birgit Schilling, Lin-Yang Cheng, Brendan X. MacLean, Dylan J. Sorensen, Alexandria K. Sahu, Michael J. MacCoss, Olga Vitek, and Bradford W. Gibson.
Data sets acquired on a TripleTOF 5600 mass spectrometer and uploaded to Panorama:
- MS1 and SWATH-MS – Kinase Inhibitor Study for quantifying changes in endogenous phosphopeptide isomers YHGHpS293MSDPGVSYR and YHGHSMSDPGVpS300YR from PDHE1a (3 injection replicates), go to Kinase Inhibitor Study in Panorama, download Kinase Inhibitor Study.
- MS1 and SWATH-MS – dilution curve of heavy labeled phosphopeptide isomers YHGHpS293MSDPGVSYR and YHGHSMSDPGVpS300YR from PDHE1a (3 injection replicates), download various isomer ratio sub files: 16:1/1:16, 8:1/1:8, 4:1/1:4, 1:2, 1:1.