27 Jul 2024 17:44:07,877 DEBUG: Resetting Job ID: 622ba5c0-2ea8-103d-b2dd-dc22ffcd6ab4

27 Jul 2024 17:44:07,901 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

27 Jul 2024 17:44:07,902 INFO : Starting to import Skyline document from TPAD-CSF-SP3_1-5_2024-07-27_17-35-36.sky.zip

27 Jul 2024 17:44:07,911 INFO : Expanding uniprot_human_jan2021_yeastENO1.protdb

27 Jul 2024 17:44:10,423 INFO : Expanding Ecl_2022_0414_TPAD_CSF1A.elib

27 Jul 2024 17:44:16,366 INFO : Expanding Ecl_2022_0402_TPAD_CSF1B.elib

27 Jul 2024 17:44:22,957 INFO : Expanding Ecl_2022_0424_TPAD_CSF2A.elib

27 Jul 2024 17:44:29,648 INFO : Expanding Ecl_2022_0505_TPAD_CSF2B.elib

27 Jul 2024 17:44:36,132 INFO : Expanding Ecl_2022_0516_TPAD_CSF3A.elib

27 Jul 2024 17:44:42,408 INFO : Expanding Ecl_2022_0628_TPAD_CSF3B.elib

27 Jul 2024 17:44:48,505 INFO : Expanding Ecl_2022_0709_TPAD_CSF4.elib

27 Jul 2024 17:44:54,590 INFO : Expanding Ecl_2022_0724_TPAD_CSF5.elib

27 Jul 2024 17:45:02,690 INFO : Expanding TPAD-CSF-SP3_1-5.skyd

27 Jul 2024 17:45:53,480 INFO : Expanding TPAD-CSF-SP3_1-5.sky.view

27 Jul 2024 17:45:53,481 INFO : Expanding TPAD-CSF-SP3_1-5.sky

27 Jul 2024 17:45:53,651 INFO : Expanding TPAD-CSF-SP3_1-5.skyl

27 Jul 2024 17:45:53,682 INFO : Reading Skyline file, TPAD-CSF-SP3_1-5.sky, to determine if the TransitionChromInfos in the document should be stored...

27 Jul 2024 17:45:53,922 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored

27 Jul 2024 17:45:53,923 WARN : The version of this Skyline document is 24.1. This is newer than the highest supported version 23.1

27 Jul 2024 17:45:53,932 INFO : 2% Done

27 Jul 2024 17:48:09,539 DEBUG: Starting to load chromatogram headers

27 Jul 2024 17:48:17,969 DEBUG: Done loading chromatogram headers

27 Jul 2024 17:48:19,882 INFO : Inserting sp|O15240|VGF_HUMAN

27 Jul 2024 17:48:20,469 INFO : 3% Done

27 Jul 2024 17:48:20,933 INFO : 4% Done

27 Jul 2024 17:48:21,346 INFO : 5% Done

27 Jul 2024 17:48:21,579 INFO : 6% Done

27 Jul 2024 17:48:21,988 INFO : 7% Done

27 Jul 2024 17:48:22,402 INFO : 8% Done

27 Jul 2024 17:48:22,820 INFO : 9% Done

27 Jul 2024 17:48:23,022 INFO : 10% Done

27 Jul 2024 17:48:23,418 INFO : 11% Done

27 Jul 2024 17:48:23,825 INFO : 12% Done

27 Jul 2024 17:48:24,236 INFO : 13% Done

27 Jul 2024 17:48:24,635 INFO : 14% Done

27 Jul 2024 17:48:24,852 INFO : 15% Done

27 Jul 2024 17:48:25,263 INFO : 16% Done

27 Jul 2024 17:48:25,465 DEBUG: Total peptides inserted: 25

27 Jul 2024 17:48:25,466 INFO : Inserting sp|O43493|TGON2_HUMAN

27 Jul 2024 17:48:25,714 INFO : 17% Done

27 Jul 2024 17:48:26,115 INFO : 18% Done

27 Jul 2024 17:48:26,522 INFO : 19% Done

27 Jul 2024 17:48:26,721 INFO : 20% Done

27 Jul 2024 17:48:27,121 INFO : 21% Done

27 Jul 2024 17:48:27,529 INFO : 22% Done

27 Jul 2024 17:48:27,871 DEBUG: Total peptides inserted: 12

27 Jul 2024 17:48:27,871 INFO : Inserting sp|O95502|NPTXR_HUMAN

27 Jul 2024 17:48:27,911 INFO : 23% Done

27 Jul 2024 17:48:28,255 INFO : 24% Done

27 Jul 2024 17:48:28,428 INFO : 25% Done

27 Jul 2024 17:48:29,215 INFO : 26% Done

27 Jul 2024 17:48:29,611 INFO : 27% Done

27 Jul 2024 17:48:29,807 INFO : 28% Done

27 Jul 2024 17:48:30,205 INFO : 29% Done

27 Jul 2024 17:48:30,369 DEBUG: Total peptides inserted: 13

27 Jul 2024 17:48:30,369 INFO : Inserting sp|P01303|NPY_HUMAN

27 Jul 2024 17:48:30,626 INFO : 30% Done

27 Jul 2024 17:48:30,955 DEBUG: Total peptides inserted: 3

27 Jul 2024 17:48:30,955 INFO : Inserting sp|P05090|APOD_HUMAN

27 Jul 2024 17:48:30,998 INFO : 31% Done

27 Jul 2024 17:48:31,193 INFO : 32% Done

27 Jul 2024 17:48:31,585 INFO : 33% Done

27 Jul 2024 17:48:31,966 INFO : 34% Done

27 Jul 2024 17:48:32,117 DEBUG: Total peptides inserted: 6

27 Jul 2024 17:48:32,117 INFO : Inserting sp|P06733|ENOA_HUMAN

27 Jul 2024 17:48:32,359 INFO : 35% Done

27 Jul 2024 17:48:32,771 INFO : 36% Done

27 Jul 2024 17:48:32,972 INFO : 37% Done

27 Jul 2024 17:48:33,364 INFO : 38% Done

27 Jul 2024 17:48:33,523 DEBUG: Total peptides inserted: 7

27 Jul 2024 17:48:33,523 INFO : Inserting sp|P09104|ENOG_HUMAN

27 Jul 2024 17:48:33,724 DEBUG: Total peptides inserted: 1

27 Jul 2024 17:48:33,724 INFO : Inserting sp|P13929|ENOB_HUMAN

27 Jul 2024 17:48:33,764 INFO : 39% Done

27 Jul 2024 17:48:33,927 DEBUG: Total peptides inserted: 1

27 Jul 2024 17:48:33,927 INFO : Inserting sp|P27348|1433T_HUMAN

27 Jul 2024 17:48:34,166 INFO : 40% Done

27 Jul 2024 17:48:34,360 INFO : 41% Done

27 Jul 2024 17:48:34,697 DEBUG: Total peptides inserted: 4

27 Jul 2024 17:48:34,697 INFO : Inserting sp|P31150|GDIA_HUMAN

27 Jul 2024 17:48:34,739 INFO : 42% Done

27 Jul 2024 17:48:35,089 INFO : 43% Done

27 Jul 2024 17:48:35,446 INFO : 44% Done

27 Jul 2024 17:48:35,773 DEBUG: Total peptides inserted: 6

27 Jul 2024 17:48:35,773 INFO : Inserting sp|P31946|1433B_HUMAN

27 Jul 2024 17:48:35,819 INFO : 45% Done

27 Jul 2024 17:48:36,179 INFO : 46% Done

27 Jul 2024 17:48:36,363 INFO : 47% Done

27 Jul 2024 17:48:36,721 INFO : 48% Done

27 Jul 2024 17:48:36,863 DEBUG: Total peptides inserted: 6

27 Jul 2024 17:48:36,863 INFO : Inserting sp|P31947|1433S_HUMAN

27 Jul 2024 17:48:37,061 DEBUG: Total peptides inserted: 1

27 Jul 2024 17:48:37,061 INFO : Inserting sp|P36222|CH3L1_HUMAN

27 Jul 2024 17:48:37,103 INFO : 49% Done

27 Jul 2024 17:48:37,497 INFO : 50% Done

27 Jul 2024 17:48:37,893 INFO : 51% Done

27 Jul 2024 17:48:38,090 INFO : 52% Done

27 Jul 2024 17:48:38,475 INFO : 53% Done

27 Jul 2024 17:48:38,849 INFO : 54% Done

27 Jul 2024 17:48:39,262 INFO : 55% Done

27 Jul 2024 17:48:39,477 INFO : 56% Done

27 Jul 2024 17:48:39,897 INFO : 57% Done

27 Jul 2024 17:48:40,306 INFO : 58% Done

27 Jul 2024 17:48:40,472 DEBUG: Total peptides inserted: 17

27 Jul 2024 17:48:40,472 INFO : Inserting sp|P47972|NPTX2_HUMAN

27 Jul 2024 17:48:40,706 INFO : 59% Done

27 Jul 2024 17:48:41,138 INFO : 60% Done

27 Jul 2024 17:48:41,334 INFO : 61% Done

27 Jul 2024 17:48:41,747 INFO : 62% Done

27 Jul 2024 17:48:42,131 INFO : 63% Done

27 Jul 2024 17:48:42,511 DEBUG: Total peptides inserted: 10

27 Jul 2024 17:48:42,511 INFO : Inserting sp|P50395|GDIB_HUMAN

27 Jul 2024 17:48:42,553 INFO : 64% Done

27 Jul 2024 17:48:42,966 INFO : 65% Done

27 Jul 2024 17:48:43,331 DEBUG: Total peptides inserted: 4

27 Jul 2024 17:48:43,331 INFO : Inserting sp|P61278|SMS_HUMAN

27 Jul 2024 17:48:43,371 INFO : 66% Done

27 Jul 2024 17:48:43,571 INFO : 67% Done

27 Jul 2024 17:48:43,920 DEBUG: Total peptides inserted: 3

27 Jul 2024 17:48:43,920 INFO : Inserting sp|P61981|1433G_HUMAN

27 Jul 2024 17:48:43,965 INFO : 68% Done

27 Jul 2024 17:48:44,354 INFO : 69% Done

27 Jul 2024 17:48:44,748 INFO : 70% Done

27 Jul 2024 17:48:45,107 DEBUG: Total peptides inserted: 6

27 Jul 2024 17:48:45,107 INFO : Inserting sp|P62258|1433E_HUMAN

27 Jul 2024 17:48:45,147 INFO : 71% Done

27 Jul 2024 17:48:45,311 DEBUG: Total peptides inserted: 1

27 Jul 2024 17:48:45,311 INFO : Inserting sp|P62937|PPIA_HUMAN

27 Jul 2024 17:48:45,555 INFO : 72% Done

27 Jul 2024 17:48:45,722 DEBUG: Total peptides inserted: 2

27 Jul 2024 17:48:45,722 INFO : Inserting sp|P63104|1433Z_HUMAN

27 Jul 2024 17:48:45,765 INFO : 73% Done

27 Jul 2024 17:48:46,157 INFO : 74% Done

27 Jul 2024 17:48:46,697 DEBUG: Total peptides inserted: 5

27 Jul 2024 17:48:46,697 INFO : Inserting sp|P98160|PGBM_HUMAN

27 Jul 2024 17:48:46,949 INFO : 75% Done

27 Jul 2024 17:48:47,345 INFO : 76% Done

27 Jul 2024 17:48:47,764 INFO : 77% Done

27 Jul 2024 17:48:47,977 INFO : 78% Done

27 Jul 2024 17:48:48,403 INFO : 79% Done

27 Jul 2024 17:48:48,801 INFO : 80% Done

27 Jul 2024 17:48:49,156 DEBUG: Total peptides inserted: 12

27 Jul 2024 17:48:49,156 INFO : Inserting sp|Q04917|1433F_HUMAN

27 Jul 2024 17:48:49,195 INFO : 81% Done

27 Jul 2024 17:48:49,397 INFO : 82% Done

27 Jul 2024 17:48:49,582 DEBUG: Total peptides inserted: 2

27 Jul 2024 17:48:49,582 INFO : Inserting sp|Q13740|CD166_HUMAN

27 Jul 2024 17:48:49,839 INFO : 83% Done

27 Jul 2024 17:48:50,267 INFO : 84% Done

27 Jul 2024 17:48:50,691 INFO : 85% Done

27 Jul 2024 17:48:51,096 INFO : 86% Done

27 Jul 2024 17:48:51,304 INFO : 87% Done

27 Jul 2024 17:48:51,654 DEBUG: Total peptides inserted: 10

27 Jul 2024 17:48:51,654 INFO : Inserting sp|Q24JP5|T132A_HUMAN

27 Jul 2024 17:48:51,698 INFO : 88% Done

27 Jul 2024 17:48:52,092 INFO : 89% Done

27 Jul 2024 17:48:52,505 INFO : 90% Done

27 Jul 2024 17:48:52,890 INFO : 91% Done

27 Jul 2024 17:48:53,056 DEBUG: Total peptides inserted: 7

27 Jul 2024 17:48:53,056 INFO : Inserting sp|Q86UN3|R4RL2_HUMAN

27 Jul 2024 17:48:53,095 INFO : 92% Done

27 Jul 2024 17:48:53,491 INFO : 93% Done

27 Jul 2024 17:48:53,883 INFO : 94% Done

27 Jul 2024 17:48:54,045 DEBUG: Total peptides inserted: 5

27 Jul 2024 17:48:54,045 INFO : Inserting sp|Q96GD0|PLPP_HUMAN

27 Jul 2024 17:48:54,290 INFO : 95% Done

27 Jul 2024 17:48:54,672 INFO : 96% Done

27 Jul 2024 17:48:54,827 DEBUG: Total peptides inserted: 4

27 Jul 2024 17:48:54,827 INFO : Inserting sp|Q9H4F8|SMOC1_HUMAN

27 Jul 2024 17:48:55,011 DEBUG: Total peptides inserted: 1

27 Jul 2024 17:48:55,011 INFO : Inserting sp|Q9ULZ9|MMP17_HUMAN

27 Jul 2024 17:48:55,052 INFO : 97% Done

27 Jul 2024 17:48:55,439 INFO : 98% Done

27 Jul 2024 17:48:55,582 DEBUG: Total peptides inserted: 3

27 Jul 2024 17:48:55,582 INFO : Done parsing Skyline document.

27 Jul 2024 17:48:55,891 INFO : Creating and populating temp tables for Proportion values

27 Jul 2024 17:48:55,983 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Jul 2024 17:48:57,740 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Jul 2024 17:48:58,456 INFO : Cleaning up temp tables

27 Jul 2024 17:48:58,800 INFO : Completed import of Skyline document from TPAD-CSF-SP3_1-5_2024-07-27_17-35-36.sky.zip

27 Jul 2024 17:48:58,803 INFO : 100% Done

27 Jul 2024 17:48:58,856 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'