27 Jul 2024 15:55:04,564 DEBUG: Resetting Job ID: 1d216bd0-2e99-103d-b2dd-dc22ffcd6ab4

27 Jul 2024 15:55:04,588 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

27 Jul 2024 15:55:04,589 INFO : Starting to import Skyline document from testCrudepeps_2024-07-27_15-54-32.sky.zip

27 Jul 2024 15:55:04,589 INFO : Expanding uniprot_human_jan2021_yeastENO1.protdb

27 Jul 2024 15:55:07,538 INFO : Expanding firstpass2.elib

27 Jul 2024 15:55:07,955 INFO : Expanding testCrudepeps.skyd

27 Jul 2024 15:55:08,808 INFO : Expanding testCrudepeps.sky.view

27 Jul 2024 15:55:08,809 INFO : Expanding testCrudepeps.sky

27 Jul 2024 15:55:08,816 INFO : Expanding testCrudepeps.skyl

27 Jul 2024 15:55:08,817 INFO : Reading Skyline file, testCrudepeps.sky, to determine if the TransitionChromInfos in the document should be stored...

27 Jul 2024 15:55:08,828 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored

27 Jul 2024 15:55:08,829 WARN : The version of this Skyline document is 24.1. This is newer than the highest supported version 23.1

27 Jul 2024 15:55:08,831 INFO : 2% Done

27 Jul 2024 15:55:10,041 DEBUG: Starting to load chromatogram headers

27 Jul 2024 15:55:10,152 DEBUG: Done loading chromatogram headers

27 Jul 2024 15:55:10,413 INFO : Inserting sp|O15240|VGF_HUMAN

27 Jul 2024 15:55:10,421 INFO : 3% Done

27 Jul 2024 15:55:10,442 INFO : 4% Done

27 Jul 2024 15:55:10,465 INFO : 5% Done

27 Jul 2024 15:55:10,484 INFO : 6% Done

27 Jul 2024 15:55:10,493 INFO : 7% Done

27 Jul 2024 15:55:10,512 INFO : 8% Done

27 Jul 2024 15:55:10,531 INFO : 9% Done

27 Jul 2024 15:55:10,550 INFO : 10% Done

27 Jul 2024 15:55:10,560 INFO : 11% Done

27 Jul 2024 15:55:10,579 INFO : 12% Done

27 Jul 2024 15:55:10,599 INFO : 13% Done

27 Jul 2024 15:55:10,609 INFO : 14% Done

27 Jul 2024 15:55:10,628 INFO : 15% Done

27 Jul 2024 15:55:10,645 DEBUG: Total peptides inserted: 24

27 Jul 2024 15:55:10,646 INFO : 16% Done

27 Jul 2024 15:55:10,646 INFO : Inserting sp|O43493|TGON2_HUMAN

27 Jul 2024 15:55:10,662 INFO : 17% Done

27 Jul 2024 15:55:10,681 INFO : 18% Done

27 Jul 2024 15:55:10,700 INFO : 19% Done

27 Jul 2024 15:55:10,710 INFO : 20% Done

27 Jul 2024 15:55:10,730 INFO : 21% Done

27 Jul 2024 15:55:10,749 DEBUG: Total peptides inserted: 10

27 Jul 2024 15:55:10,750 INFO : 22% Done

27 Jul 2024 15:55:10,750 INFO : Inserting sp|O95502|NPTXR_HUMAN

27 Jul 2024 15:55:10,766 INFO : 23% Done

27 Jul 2024 15:55:10,786 INFO : 24% Done

27 Jul 2024 15:55:10,806 INFO : 25% Done

27 Jul 2024 15:55:10,835 INFO : 26% Done

27 Jul 2024 15:55:10,854 INFO : 27% Done

27 Jul 2024 15:55:10,872 INFO : 28% Done

27 Jul 2024 15:55:10,880 DEBUG: Total peptides inserted: 13

27 Jul 2024 15:55:10,880 INFO : Inserting sp|P01303|NPY_HUMAN

27 Jul 2024 15:55:10,886 INFO : 29% Done

27 Jul 2024 15:55:10,903 INFO : 30% Done

27 Jul 2024 15:55:10,911 DEBUG: Total peptides inserted: 3

27 Jul 2024 15:55:10,911 INFO : Inserting sp|P05090|APOD_HUMAN

27 Jul 2024 15:55:10,926 INFO : 31% Done

27 Jul 2024 15:55:10,937 INFO : 32% Done

27 Jul 2024 15:55:10,956 INFO : 33% Done

27 Jul 2024 15:55:10,973 DEBUG: Total peptides inserted: 6

27 Jul 2024 15:55:10,973 INFO : Inserting sp|P06733|ENOA_HUMAN

27 Jul 2024 15:55:10,980 INFO : 34% Done

27 Jul 2024 15:55:10,999 INFO : 35% Done

27 Jul 2024 15:55:11,009 INFO : 36% Done

27 Jul 2024 15:55:11,029 INFO : 37% Done

27 Jul 2024 15:55:11,047 DEBUG: Total peptides inserted: 7

27 Jul 2024 15:55:11,047 INFO : Inserting sp|P09104|ENOG_HUMAN

27 Jul 2024 15:55:11,054 INFO : 38% Done

27 Jul 2024 15:55:11,061 DEBUG: Total peptides inserted: 1

27 Jul 2024 15:55:11,062 INFO : Inserting sp|P13929|ENOB_HUMAN

27 Jul 2024 15:55:11,074 DEBUG: Total peptides inserted: 1

27 Jul 2024 15:55:11,074 INFO : Inserting sp|P27348|1433T_HUMAN

27 Jul 2024 15:55:11,081 INFO : 39% Done

27 Jul 2024 15:55:11,092 INFO : 40% Done

27 Jul 2024 15:55:11,110 INFO : 41% Done

27 Jul 2024 15:55:11,118 DEBUG: Total peptides inserted: 4

27 Jul 2024 15:55:11,119 INFO : Inserting sp|P31150|GDIA_HUMAN

27 Jul 2024 15:55:11,135 INFO : 42% Done

27 Jul 2024 15:55:11,155 INFO : 43% Done

27 Jul 2024 15:55:11,165 INFO : 44% Done

27 Jul 2024 15:55:11,182 DEBUG: Total peptides inserted: 6

27 Jul 2024 15:55:11,182 INFO : Inserting sp|P31946|1433B_HUMAN

27 Jul 2024 15:55:11,188 INFO : 45% Done

27 Jul 2024 15:55:11,198 INFO : 46% Done

27 Jul 2024 15:55:11,216 INFO : 47% Done

27 Jul 2024 15:55:11,234 INFO : 48% Done

27 Jul 2024 15:55:11,241 DEBUG: Total peptides inserted: 6

27 Jul 2024 15:55:11,241 INFO : Inserting sp|P31947|1433S_HUMAN

27 Jul 2024 15:55:11,247 INFO : 49% Done

27 Jul 2024 15:55:11,255 DEBUG: Total peptides inserted: 1

27 Jul 2024 15:55:11,255 INFO : Inserting sp|P36222|CH3L1_HUMAN

27 Jul 2024 15:55:11,270 INFO : 50% Done

27 Jul 2024 15:55:11,289 INFO : 51% Done

27 Jul 2024 15:55:11,298 INFO : 52% Done

27 Jul 2024 15:55:11,317 INFO : 53% Done

27 Jul 2024 15:55:11,335 INFO : 54% Done

27 Jul 2024 15:55:11,345 INFO : 55% Done

27 Jul 2024 15:55:11,363 INFO : 56% Done

27 Jul 2024 15:55:11,381 INFO : 57% Done

27 Jul 2024 15:55:11,398 DEBUG: Total peptides inserted: 15

27 Jul 2024 15:55:11,398 INFO : Inserting sp|P47972|NPTX2_HUMAN

27 Jul 2024 15:55:11,404 INFO : 58% Done

27 Jul 2024 15:55:11,413 INFO : 59% Done

27 Jul 2024 15:55:11,437 INFO : 60% Done

27 Jul 2024 15:55:11,456 INFO : 61% Done

27 Jul 2024 15:55:11,473 INFO : 62% Done

27 Jul 2024 15:55:11,481 DEBUG: Total peptides inserted: 9

27 Jul 2024 15:55:11,481 INFO : Inserting sp|P50395|GDIB_HUMAN

27 Jul 2024 15:55:11,486 INFO : 63% Done

27 Jul 2024 15:55:11,505 INFO : 64% Done

27 Jul 2024 15:55:11,521 DEBUG: Total peptides inserted: 4

27 Jul 2024 15:55:11,522 INFO : 65% Done

27 Jul 2024 15:55:11,522 INFO : Inserting sp|P61278|SMS_HUMAN

27 Jul 2024 15:55:11,537 INFO : 66% Done

27 Jul 2024 15:55:11,554 DEBUG: Total peptides inserted: 3

27 Jul 2024 15:55:11,554 INFO : Inserting sp|P61981|1433G_HUMAN

27 Jul 2024 15:55:11,559 INFO : 67% Done

27 Jul 2024 15:55:11,570 INFO : 68% Done

27 Jul 2024 15:55:11,589 INFO : 69% Done

27 Jul 2024 15:55:11,606 DEBUG: Total peptides inserted: 5

27 Jul 2024 15:55:11,606 INFO : Inserting sp|P62258|1433E_HUMAN

27 Jul 2024 15:55:11,612 INFO : 70% Done

27 Jul 2024 15:55:11,619 DEBUG: Total peptides inserted: 1

27 Jul 2024 15:55:11,619 INFO : Inserting sp|P62937|PPIA_HUMAN

27 Jul 2024 15:55:11,627 INFO : 71% Done

27 Jul 2024 15:55:11,643 DEBUG: Total peptides inserted: 2

27 Jul 2024 15:55:11,643 INFO : Inserting sp|P63104|1433Z_HUMAN

27 Jul 2024 15:55:11,651 INFO : 72% Done

27 Jul 2024 15:55:11,669 INFO : 73% Done

27 Jul 2024 15:55:11,680 INFO : 74% Done

27 Jul 2024 15:55:11,688 DEBUG: Total peptides inserted: 4

27 Jul 2024 15:55:11,688 INFO : Inserting sp|P98160|PGBM_HUMAN

27 Jul 2024 15:55:11,713 INFO : 75% Done

27 Jul 2024 15:55:11,732 INFO : 76% Done

27 Jul 2024 15:55:11,742 INFO : 77% Done

27 Jul 2024 15:55:11,759 INFO : 78% Done

27 Jul 2024 15:55:11,778 INFO : 79% Done

27 Jul 2024 15:55:11,796 INFO : 80% Done

27 Jul 2024 15:55:11,804 DEBUG: Total peptides inserted: 12

27 Jul 2024 15:55:11,804 INFO : Inserting sp|Q04917|1433F_HUMAN

27 Jul 2024 15:55:11,811 INFO : 81% Done

27 Jul 2024 15:55:11,827 DEBUG: Total peptides inserted: 2

27 Jul 2024 15:55:11,827 INFO : Inserting sp|Q13740|CD166_HUMAN

27 Jul 2024 15:55:11,833 INFO : 82% Done

27 Jul 2024 15:55:11,852 INFO : 83% Done

27 Jul 2024 15:55:11,871 INFO : 84% Done

27 Jul 2024 15:55:11,882 INFO : 85% Done

27 Jul 2024 15:55:11,901 INFO : 86% Done

27 Jul 2024 15:55:11,919 DEBUG: Total peptides inserted: 9

27 Jul 2024 15:55:11,919 INFO : Inserting sp|Q24JP5|T132A_HUMAN

27 Jul 2024 15:55:11,925 INFO : 87% Done

27 Jul 2024 15:55:11,936 INFO : 88% Done

27 Jul 2024 15:55:11,956 INFO : 89% Done

27 Jul 2024 15:55:11,976 INFO : 90% Done

27 Jul 2024 15:55:11,993 DEBUG: Total peptides inserted: 7

27 Jul 2024 15:55:11,994 INFO : 91% Done

27 Jul 2024 15:55:11,994 INFO : Inserting sp|Q86UN3|R4RL2_HUMAN

27 Jul 2024 15:55:12,010 INFO : 92% Done

27 Jul 2024 15:55:12,029 INFO : 93% Done

27 Jul 2024 15:55:12,043 DEBUG: Total peptides inserted: 5

27 Jul 2024 15:55:12,043 INFO : Inserting sp|Q96GD0|PLPP_HUMAN

27 Jul 2024 15:55:12,049 INFO : 94% Done

27 Jul 2024 15:55:12,068 INFO : 95% Done

27 Jul 2024 15:55:12,078 INFO : 96% Done

27 Jul 2024 15:55:12,086 DEBUG: Total peptides inserted: 4

27 Jul 2024 15:55:12,086 INFO : Inserting sp|Q9H4F8|SMOC1_HUMAN

27 Jul 2024 15:55:12,100 DEBUG: Total peptides inserted: 1

27 Jul 2024 15:55:12,101 INFO : 97% Done

27 Jul 2024 15:55:12,101 INFO : Inserting sp|Q9ULZ9|MMP17_HUMAN

27 Jul 2024 15:55:12,116 INFO : 98% Done

27 Jul 2024 15:55:12,134 DEBUG: Total peptides inserted: 3

27 Jul 2024 15:55:12,134 INFO : Done parsing Skyline document.

27 Jul 2024 15:55:12,212 INFO : Creating and populating temp tables for Proportion values

27 Jul 2024 15:55:12,221 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo

27 Jul 2024 15:55:12,247 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo

27 Jul 2024 15:55:12,266 INFO : Cleaning up temp tables

27 Jul 2024 15:55:12,577 INFO : Completed import of Skyline document from testCrudepeps_2024-07-27_15-54-32.sky.zip

27 Jul 2024 15:55:12,580 INFO : 100% Done

27 Jul 2024 15:55:12,623 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'