23 Jun 2024 05:39:34,233 DEBUG: Resetting Job ID: 338c5e9f-138b-103d-86c9-dc22ffcd69ea
23 Jun 2024 05:39:34,250 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
23 Jun 2024 05:39:34,251 INFO : Starting to import Skyline document from 2024-0622-TBI Plasma EV_2024-06-23_05-40-34.sky.zip
23 Jun 2024 05:39:34,251 INFO : Expanding Enolase-PRTC.blib
23 Jun 2024 05:39:34,253 INFO : Expanding 2024-0622-TBI Plasma EV.skyd
23 Jun 2024 05:39:34,460 INFO : Expanding 2024-0622-TBI Plasma EV.sky
23 Jun 2024 05:39:34,467 INFO : Reading Skyline file, 2024-0622-TBI Plasma EV.sky, to determine if the TransitionChromInfos in the document should be stored...
23 Jun 2024 05:39:34,477 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
23 Jun 2024 05:39:34,477 WARN : The version of this Skyline document is 23.13. This is newer than the highest supported version 23.1
23 Jun 2024 05:39:34,479 INFO : 1% Done
23 Jun 2024 05:39:34,557 DEBUG: Starting to load chromatogram headers
23 Jun 2024 05:39:34,558 DEBUG: Done loading chromatogram headers
23 Jun 2024 05:39:35,397 INFO : Inserting iRT standards
23 Jun 2024 05:39:35,399 INFO : 2% Done
23 Jun 2024 05:39:35,399 INFO : Inserting sp|P00924|ENO1_YEAST
23 Jun 2024 05:39:35,409 INFO : 5% Done
23 Jun 2024 05:39:35,449 INFO : 10% Done
23 Jun 2024 05:39:35,487 INFO : 13% Done
23 Jun 2024 05:39:35,516 INFO : 16% Done
23 Jun 2024 05:39:35,543 DEBUG: Total peptides inserted: 4
23 Jun 2024 05:39:35,543 INFO : Inserting PRTC
23 Jun 2024 05:39:35,550 INFO : 19% Done
23 Jun 2024 05:39:35,577 INFO : 22% Done
23 Jun 2024 05:39:35,605 INFO : 25% Done
23 Jun 2024 05:39:35,633 INFO : 28% Done
23 Jun 2024 05:39:35,660 INFO : 31% Done
23 Jun 2024 05:39:35,687 INFO : 34% Done
23 Jun 2024 05:39:35,715 INFO : 37% Done
23 Jun 2024 05:39:35,742 INFO : 39% Done
23 Jun 2024 05:39:35,770 INFO : 42% Done
23 Jun 2024 05:39:35,799 INFO : 45% Done
23 Jun 2024 05:39:35,829 INFO : 48% Done
23 Jun 2024 05:39:35,856 INFO : 51% Done
23 Jun 2024 05:39:35,884 INFO : 54% Done
23 Jun 2024 05:39:35,914 INFO : 57% Done
23 Jun 2024 05:39:35,936 DEBUG: Total peptides inserted: 14
23 Jun 2024 05:39:35,936 INFO : Inserting sp|P00761|TRYP_PIG
23 Jun 2024 05:39:35,944 INFO : 60% Done
23 Jun 2024 05:39:35,966 DEBUG: Total peptides inserted: 1
23 Jun 2024 05:39:35,966 INFO : Done parsing Skyline document.
23 Jun 2024 05:39:35,967 INFO : Updating previously imported data for 23 old sample files.
23 Jun 2024 05:39:35,967 DEBUG: Found data for the following old sample files in the QC folder:
23 Jun 2024 05:39:35,967 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-H1-7826-12.raw
23 Jun 2024 05:39:35,967 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-001.raw
23 Jun 2024 05:39:35,967 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-003.raw
23 Jun 2024 05:39:35,967 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-H4-7380-15.raw
23 Jun 2024 05:39:35,967 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-H2-7849-13.raw
23 Jun 2024 05:39:35,967 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G11-7562-11.raw
23 Jun 2024 05:39:35,967 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G9-MM-09.raw
23 Jun 2024 05:39:35,967 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G2-7555-02.raw
23 Jun 2024 05:39:35,967 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-H3-7397-14.raw
23 Jun 2024 05:39:35,967 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-GPF3-Chrlib-03.raw
23 Jun 2024 05:39:35,967 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-GPF1-Chrlib-01.raw
23 Jun 2024 05:39:35,967 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G4-7626-04.raw
23 Jun 2024 05:39:35,967 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G6-7438-06.raw
23 Jun 2024 05:39:35,967 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G10-TBI-10.raw
23 Jun 2024 05:39:35,968 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G5-7638-05.raw
23 Jun 2024 05:39:35,968 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-002.raw
23 Jun 2024 05:39:35,968 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-GPF4-Chrlib-04.raw
23 Jun 2024 05:39:35,968 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-H5-MM-16.raw
23 Jun 2024 05:39:35,968 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G3-7375-03.raw
23 Jun 2024 05:39:35,968 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G8-7406-08.raw
23 Jun 2024 05:39:35,968 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G7-7485-07.raw
23 Jun 2024 05:39:35,968 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-GPF2-Chrlib-02.raw
23 Jun 2024 05:39:35,968 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G1-7638-01.raw
23 Jun 2024 05:39:40,385 INFO : 98% Done
23 Jun 2024 05:39:40,385 INFO : Done updating previously imported sample file data.
23 Jun 2024 05:39:41,122 INFO : All the related sampleFiles for /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-23_05-10-54.sky.zip have been updated with newer data.
23 Jun 2024 05:39:41,122 INFO : Deleting /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-23_05-10-54.sky.zip
23 Jun 2024 05:39:41,122 INFO : Deleting directory /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-23_05-10-54
23 Jun 2024 05:39:41,122 INFO : Creating and populating temp tables for Proportion values
23 Jun 2024 05:39:41,128 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
23 Jun 2024 05:39:41,145 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
23 Jun 2024 05:39:41,158 INFO : Cleaning up temp tables
23 Jun 2024 05:39:41,443 INFO : Completed import of Skyline document from 2024-0622-TBI Plasma EV_2024-06-23_05-40-34.sky.zip
23 Jun 2024 05:39:41,445 INFO : 100% Done
23 Jun 2024 05:39:41,468 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'