23 Jun 2024 04:40:17,523 DEBUG: Resetting Job ID: 07b01a57-1383-103d-86c9-dc22ffcd69ea
23 Jun 2024 04:40:17,540 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
23 Jun 2024 04:40:17,541 INFO : Starting to import Skyline document from 2024-0622-TBI Plasma EV_2024-06-23_04-41-17.sky.zip
23 Jun 2024 04:40:17,542 INFO : Expanding Enolase-PRTC.blib
23 Jun 2024 04:40:17,543 INFO : Expanding 2024-0622-TBI Plasma EV.skyd
23 Jun 2024 04:40:17,736 INFO : Expanding 2024-0622-TBI Plasma EV.sky
23 Jun 2024 04:40:17,742 INFO : Reading Skyline file, 2024-0622-TBI Plasma EV.sky, to determine if the TransitionChromInfos in the document should be stored...
23 Jun 2024 04:40:17,751 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
23 Jun 2024 04:40:17,751 WARN : The version of this Skyline document is 23.13. This is newer than the highest supported version 23.1
23 Jun 2024 04:40:17,753 INFO : 2% Done
23 Jun 2024 04:40:17,823 DEBUG: Starting to load chromatogram headers
23 Jun 2024 04:40:17,825 DEBUG: Done loading chromatogram headers
23 Jun 2024 04:40:18,439 INFO : Inserting iRT standards
23 Jun 2024 04:40:18,440 INFO : Inserting sp|P00924|ENO1_YEAST
23 Jun 2024 04:40:18,450 INFO : 5% Done
23 Jun 2024 04:40:18,496 INFO : 10% Done
23 Jun 2024 04:40:18,531 INFO : 13% Done
23 Jun 2024 04:40:18,560 INFO : 16% Done
23 Jun 2024 04:40:18,585 DEBUG: Total peptides inserted: 4
23 Jun 2024 04:40:18,585 INFO : Inserting PRTC
23 Jun 2024 04:40:18,593 INFO : 19% Done
23 Jun 2024 04:40:18,620 INFO : 22% Done
23 Jun 2024 04:40:18,646 INFO : 25% Done
23 Jun 2024 04:40:18,671 INFO : 28% Done
23 Jun 2024 04:40:18,697 INFO : 31% Done
23 Jun 2024 04:40:18,724 INFO : 34% Done
23 Jun 2024 04:40:18,750 INFO : 37% Done
23 Jun 2024 04:40:18,776 INFO : 39% Done
23 Jun 2024 04:40:18,803 INFO : 42% Done
23 Jun 2024 04:40:18,829 INFO : 45% Done
23 Jun 2024 04:40:18,857 INFO : 48% Done
23 Jun 2024 04:40:18,882 INFO : 51% Done
23 Jun 2024 04:40:18,909 INFO : 54% Done
23 Jun 2024 04:40:18,936 INFO : 57% Done
23 Jun 2024 04:40:18,957 DEBUG: Total peptides inserted: 14
23 Jun 2024 04:40:18,957 INFO : Inserting sp|P00761|TRYP_PIG
23 Jun 2024 04:40:18,964 INFO : 60% Done
23 Jun 2024 04:40:18,984 DEBUG: Total peptides inserted: 1
23 Jun 2024 04:40:18,984 INFO : Done parsing Skyline document.
23 Jun 2024 04:40:18,985 INFO : Updating previously imported data for 21 old sample files.
23 Jun 2024 04:40:18,985 DEBUG: Found data for the following old sample files in the QC folder:
23 Jun 2024 04:40:18,985 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-H1-7826-12.raw
23 Jun 2024 04:40:18,985 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-001.raw
23 Jun 2024 04:40:18,985 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-003.raw
23 Jun 2024 04:40:18,985 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-H2-7849-13.raw
23 Jun 2024 04:40:18,985 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G11-7562-11.raw
23 Jun 2024 04:40:18,985 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G9-MM-09.raw
23 Jun 2024 04:40:18,985 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G2-7555-02.raw
23 Jun 2024 04:40:18,985 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-H3-7397-14.raw
23 Jun 2024 04:40:18,985 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-GPF3-Chrlib-03.raw
23 Jun 2024 04:40:18,985 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-GPF1-Chrlib-01.raw
23 Jun 2024 04:40:18,985 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G4-7626-04.raw
23 Jun 2024 04:40:18,985 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G6-7438-06.raw
23 Jun 2024 04:40:18,985 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G10-TBI-10.raw
23 Jun 2024 04:40:18,985 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G5-7638-05.raw
23 Jun 2024 04:40:18,986 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-002.raw
23 Jun 2024 04:40:18,986 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-GPF4-Chrlib-04.raw
23 Jun 2024 04:40:18,986 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G3-7375-03.raw
23 Jun 2024 04:40:18,986 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G8-7406-08.raw
23 Jun 2024 04:40:18,986 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G7-7485-07.raw
23 Jun 2024 04:40:18,986 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-GPF2-Chrlib-02.raw
23 Jun 2024 04:40:18,986 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G1-7638-01.raw
23 Jun 2024 04:40:23,252 INFO : 98% Done
23 Jun 2024 04:40:23,252 INFO : Done updating previously imported sample file data.
23 Jun 2024 04:40:24,025 INFO : All the related sampleFiles for /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-23_04-11-35.sky.zip have been updated with newer data.
23 Jun 2024 04:40:24,025 INFO : Deleting /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-23_04-11-35.sky.zip
23 Jun 2024 04:40:24,025 INFO : Deleting directory /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-23_04-11-35
23 Jun 2024 04:40:24,025 INFO : Creating and populating temp tables for Proportion values
23 Jun 2024 04:40:24,031 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
23 Jun 2024 04:40:24,047 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
23 Jun 2024 04:40:24,059 INFO : Cleaning up temp tables
23 Jun 2024 04:40:24,366 INFO : Completed import of Skyline document from 2024-0622-TBI Plasma EV_2024-06-23_04-41-17.sky.zip
23 Jun 2024 04:40:24,368 INFO : 100% Done
23 Jun 2024 04:40:24,393 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'