23 Jun 2024 02:13:15,329 DEBUG: Resetting Job ID: a2fc9315-136e-103d-86c9-dc22ffcd69ea
23 Jun 2024 02:13:15,348 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
23 Jun 2024 02:13:15,349 INFO : Starting to import Skyline document from 2024-0622-TBI Plasma EV_2024-06-23_02-14-15.sky.zip
23 Jun 2024 02:13:15,349 INFO : Expanding Enolase-PRTC.blib
23 Jun 2024 02:13:15,351 INFO : Expanding 2024-0622-TBI Plasma EV.skyd
23 Jun 2024 02:13:15,510 INFO : Expanding 2024-0622-TBI Plasma EV.sky
23 Jun 2024 02:13:15,515 INFO : Reading Skyline file, 2024-0622-TBI Plasma EV.sky, to determine if the TransitionChromInfos in the document should be stored...
23 Jun 2024 02:13:15,523 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
23 Jun 2024 02:13:15,523 WARN : The version of this Skyline document is 23.13. This is newer than the highest supported version 23.1
23 Jun 2024 02:13:15,525 INFO : 2% Done
23 Jun 2024 02:13:15,583 DEBUG: Starting to load chromatogram headers
23 Jun 2024 02:13:15,584 DEBUG: Done loading chromatogram headers
23 Jun 2024 02:13:15,776 INFO : Inserting iRT standards
23 Jun 2024 02:13:15,777 INFO : Inserting sp|P00924|ENO1_YEAST
23 Jun 2024 02:13:15,786 INFO : 5% Done
23 Jun 2024 02:13:15,820 INFO : 10% Done
23 Jun 2024 02:13:15,851 INFO : 13% Done
23 Jun 2024 02:13:15,875 INFO : 16% Done
23 Jun 2024 02:13:15,897 DEBUG: Total peptides inserted: 4
23 Jun 2024 02:13:15,897 INFO : Inserting PRTC
23 Jun 2024 02:13:15,903 INFO : 19% Done
23 Jun 2024 02:13:15,926 INFO : 22% Done
23 Jun 2024 02:13:15,948 INFO : 25% Done
23 Jun 2024 02:13:15,970 INFO : 28% Done
23 Jun 2024 02:13:15,993 INFO : 31% Done
23 Jun 2024 02:13:16,015 INFO : 34% Done
23 Jun 2024 02:13:16,038 INFO : 37% Done
23 Jun 2024 02:13:16,061 INFO : 39% Done
23 Jun 2024 02:13:16,085 INFO : 42% Done
23 Jun 2024 02:13:16,108 INFO : 45% Done
23 Jun 2024 02:13:16,132 INFO : 48% Done
23 Jun 2024 02:13:16,155 INFO : 51% Done
23 Jun 2024 02:13:16,177 INFO : 54% Done
23 Jun 2024 02:13:16,202 INFO : 57% Done
23 Jun 2024 02:13:16,220 DEBUG: Total peptides inserted: 14
23 Jun 2024 02:13:16,220 INFO : Inserting sp|P00761|TRYP_PIG
23 Jun 2024 02:13:16,227 INFO : 60% Done
23 Jun 2024 02:13:16,246 DEBUG: Total peptides inserted: 1
23 Jun 2024 02:13:16,246 INFO : Done parsing Skyline document.
23 Jun 2024 02:13:16,247 INFO : Updating previously imported data for 17 old sample files.
23 Jun 2024 02:13:16,247 DEBUG: Found data for the following old sample files in the QC folder:
23 Jun 2024 02:13:16,247 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-001.raw
23 Jun 2024 02:13:16,247 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-003.raw
23 Jun 2024 02:13:16,247 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G11-7562-11.raw
23 Jun 2024 02:13:16,247 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G9-MM-09.raw
23 Jun 2024 02:13:16,247 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G2-7555-02.raw
23 Jun 2024 02:13:16,247 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-GPF3-Chrlib-03.raw
23 Jun 2024 02:13:16,247 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-GPF1-Chrlib-01.raw
23 Jun 2024 02:13:16,247 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G4-7626-04.raw
23 Jun 2024 02:13:16,247 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G6-7438-06.raw
23 Jun 2024 02:13:16,247 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G10-TBI-10.raw
23 Jun 2024 02:13:16,247 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G5-7638-05.raw
23 Jun 2024 02:13:16,247 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-002.raw
23 Jun 2024 02:13:16,247 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G3-7375-03.raw
23 Jun 2024 02:13:16,248 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G8-7406-08.raw
23 Jun 2024 02:13:16,249 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G7-7485-07.raw
23 Jun 2024 02:13:16,249 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-GPF2-Chrlib-02.raw
23 Jun 2024 02:13:16,249 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G1-7638-01.raw
23 Jun 2024 02:13:21,314 INFO : 98% Done
23 Jun 2024 02:13:21,314 INFO : Done updating previously imported sample file data.
23 Jun 2024 02:13:22,266 INFO : All the related sampleFiles for /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-23_01-56-16.sky.zip have been updated with newer data.
23 Jun 2024 02:13:22,266 INFO : Deleting /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-23_01-56-16.sky.zip
23 Jun 2024 02:13:22,266 INFO : Deleting directory /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-23_01-56-16
23 Jun 2024 02:13:22,266 INFO : Creating and populating temp tables for Proportion values
23 Jun 2024 02:13:22,272 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
23 Jun 2024 02:13:22,289 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
23 Jun 2024 02:13:22,300 INFO : Cleaning up temp tables
23 Jun 2024 02:13:22,629 INFO : Completed import of Skyline document from 2024-0622-TBI Plasma EV_2024-06-23_02-14-15.sky.zip
23 Jun 2024 02:13:22,631 INFO : 100% Done
23 Jun 2024 02:13:22,656 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'