23 Jun 2024 00:27:39,249 DEBUG: Resetting Job ID: b7b90c76-135f-103d-86c9-dc22ffcd69ea
23 Jun 2024 00:27:47,410 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
23 Jun 2024 00:27:47,411 INFO : Starting to import Skyline document from 2024-0622-TBI Plasma EV_2024-06-23_00-28-39.sky.zip
23 Jun 2024 00:27:47,411 INFO : Expanding Enolase-PRTC.blib
23 Jun 2024 00:27:47,412 INFO : Expanding 2024-0622-TBI Plasma EV.skyd
23 Jun 2024 00:27:47,538 INFO : Expanding 2024-0622-TBI Plasma EV.sky
23 Jun 2024 00:27:47,542 INFO : Reading Skyline file, 2024-0622-TBI Plasma EV.sky, to determine if the TransitionChromInfos in the document should be stored...
23 Jun 2024 00:27:47,549 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
23 Jun 2024 00:27:47,549 WARN : The version of this Skyline document is 23.13. This is newer than the highest supported version 23.1
23 Jun 2024 00:27:47,551 INFO : 2% Done
23 Jun 2024 00:27:47,600 DEBUG: Starting to load chromatogram headers
23 Jun 2024 00:27:47,601 DEBUG: Done loading chromatogram headers
23 Jun 2024 00:27:47,803 INFO : Inserting iRT standards
23 Jun 2024 00:27:47,804 INFO : Inserting sp|P00924|ENO1_YEAST
23 Jun 2024 00:27:47,812 INFO : 5% Done
23 Jun 2024 00:27:47,842 INFO : 10% Done
23 Jun 2024 00:27:47,873 INFO : 13% Done
23 Jun 2024 00:27:47,901 INFO : 16% Done
23 Jun 2024 00:27:47,927 DEBUG: Total peptides inserted: 4
23 Jun 2024 00:27:47,927 INFO : Inserting PRTC
23 Jun 2024 00:27:47,934 INFO : 19% Done
23 Jun 2024 00:27:47,957 INFO : 22% Done
23 Jun 2024 00:27:47,977 INFO : 25% Done
23 Jun 2024 00:27:47,998 INFO : 28% Done
23 Jun 2024 00:27:48,017 INFO : 31% Done
23 Jun 2024 00:27:48,036 INFO : 34% Done
23 Jun 2024 00:27:48,056 INFO : 37% Done
23 Jun 2024 00:27:48,076 INFO : 40% Done
23 Jun 2024 00:27:48,096 INFO : 42% Done
23 Jun 2024 00:27:48,117 INFO : 46% Done
23 Jun 2024 00:27:48,138 INFO : 48% Done
23 Jun 2024 00:27:48,158 INFO : 51% Done
23 Jun 2024 00:27:48,181 INFO : 55% Done
23 Jun 2024 00:27:48,203 INFO : 57% Done
23 Jun 2024 00:27:48,220 DEBUG: Total peptides inserted: 14
23 Jun 2024 00:27:48,220 INFO : Inserting sp|P00761|TRYP_PIG
23 Jun 2024 00:27:48,227 INFO : 60% Done
23 Jun 2024 00:27:48,242 DEBUG: Total peptides inserted: 1
23 Jun 2024 00:27:48,242 INFO : Done parsing Skyline document.
23 Jun 2024 00:27:48,242 INFO : Updating previously imported data for 13 old sample files.
23 Jun 2024 00:27:48,242 DEBUG: Found data for the following old sample files in the QC folder:
23 Jun 2024 00:27:48,242 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G5-7638-05.raw
23 Jun 2024 00:27:48,242 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-002.raw
23 Jun 2024 00:27:48,242 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-001.raw
23 Jun 2024 00:27:48,243 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-003.raw
23 Jun 2024 00:27:48,243 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G9-MM-09.raw
23 Jun 2024 00:27:48,243 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G2-7555-02.raw
23 Jun 2024 00:27:48,243 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G3-7375-03.raw
23 Jun 2024 00:27:48,243 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G8-7406-08.raw
23 Jun 2024 00:27:48,243 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G4-7626-04.raw
23 Jun 2024 00:27:48,243 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G7-7485-07.raw
23 Jun 2024 00:27:48,243 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G6-7438-06.raw
23 Jun 2024 00:27:48,243 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G10-TBI-10.raw
23 Jun 2024 00:27:48,243 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G1-7638-01.raw
23 Jun 2024 00:27:52,732 INFO : 98% Done
23 Jun 2024 00:27:52,732 INFO : Done updating previously imported sample file data.
23 Jun 2024 00:27:53,570 INFO : All the related sampleFiles for /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-23_00-24-38.sky.zip have been updated with newer data.
23 Jun 2024 00:27:53,570 INFO : Deleting /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-23_00-24-38.sky.zip
23 Jun 2024 00:27:53,570 INFO : Deleting directory /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-23_00-24-38
23 Jun 2024 00:27:53,570 INFO : Creating and populating temp tables for Proportion values
23 Jun 2024 00:27:53,575 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
23 Jun 2024 00:27:53,586 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
23 Jun 2024 00:27:53,593 INFO : Cleaning up temp tables
23 Jun 2024 00:27:53,870 INFO : Completed import of Skyline document from 2024-0622-TBI Plasma EV_2024-06-23_00-28-39.sky.zip
23 Jun 2024 00:27:53,872 INFO : 100% Done
23 Jun 2024 00:27:53,895 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'