22 Jun 2024 21:12:17,118 DEBUG: Resetting Job ID: ac5c684f-1344-103d-86c9-dc22ffcd69ea
22 Jun 2024 21:12:17,136 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
22 Jun 2024 21:12:17,138 INFO : Starting to import Skyline document from 2024-0622-TBI Plasma EV_2024-06-22_21-13-17.sky.zip
22 Jun 2024 21:12:17,138 INFO : Expanding Enolase-PRTC.blib
22 Jun 2024 21:12:17,140 INFO : Expanding 2024-0622-TBI Plasma EV.skyd
22 Jun 2024 21:12:17,217 INFO : Expanding 2024-0622-TBI Plasma EV.sky
22 Jun 2024 21:12:17,221 INFO : Reading Skyline file, 2024-0622-TBI Plasma EV.sky, to determine if the TransitionChromInfos in the document should be stored...
22 Jun 2024 21:12:17,226 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
22 Jun 2024 21:12:17,226 WARN : The version of this Skyline document is 23.13. This is newer than the highest supported version 23.1
22 Jun 2024 21:12:17,228 INFO : 2% Done
22 Jun 2024 21:12:17,258 DEBUG: Starting to load chromatogram headers
22 Jun 2024 21:12:17,258 DEBUG: Done loading chromatogram headers
22 Jun 2024 21:12:17,430 INFO : Inserting iRT standards
22 Jun 2024 21:12:17,431 INFO : Inserting sp|P00924|ENO1_YEAST
22 Jun 2024 21:12:17,438 INFO : 5% Done
22 Jun 2024 21:12:17,459 INFO : 10% Done
22 Jun 2024 21:12:17,479 INFO : 13% Done
22 Jun 2024 21:12:17,494 INFO : 17% Done
22 Jun 2024 21:12:17,508 DEBUG: Total peptides inserted: 4
22 Jun 2024 21:12:17,508 INFO : Inserting PRTC
22 Jun 2024 21:12:17,512 INFO : 20% Done
22 Jun 2024 21:12:17,526 INFO : 22% Done
22 Jun 2024 21:12:17,540 INFO : 25% Done
22 Jun 2024 21:12:17,554 INFO : 28% Done
22 Jun 2024 21:12:17,568 INFO : 31% Done
22 Jun 2024 21:12:17,582 INFO : 34% Done
22 Jun 2024 21:12:17,596 INFO : 37% Done
22 Jun 2024 21:12:17,611 INFO : 40% Done
22 Jun 2024 21:12:17,624 INFO : 43% Done
22 Jun 2024 21:12:17,643 INFO : 46% Done
22 Jun 2024 21:12:17,663 INFO : 49% Done
22 Jun 2024 21:12:17,681 INFO : 51% Done
22 Jun 2024 21:12:17,700 INFO : 55% Done
22 Jun 2024 21:12:17,718 INFO : 58% Done
22 Jun 2024 21:12:17,733 DEBUG: Total peptides inserted: 14
22 Jun 2024 21:12:17,734 INFO : Inserting sp|P00761|TRYP_PIG
22 Jun 2024 21:12:17,740 INFO : 60% Done
22 Jun 2024 21:12:17,751 DEBUG: Total peptides inserted: 1
22 Jun 2024 21:12:17,751 INFO : Done parsing Skyline document.
22 Jun 2024 21:12:17,752 INFO : Updating previously imported data for 7 old sample files.
22 Jun 2024 21:12:17,752 DEBUG: Found data for the following old sample files in the QC folder:
22 Jun 2024 21:12:17,752 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-002.raw
22 Jun 2024 21:12:17,752 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-001.raw
22 Jun 2024 21:12:17,752 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-003.raw
22 Jun 2024 21:12:17,752 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G2-7555-02.raw
22 Jun 2024 21:12:17,752 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G3-7375-03.raw
22 Jun 2024 21:12:17,752 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G4-7626-04.raw
22 Jun 2024 21:12:17,752 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G1-7638-01.raw
22 Jun 2024 21:12:20,049 INFO : 98% Done
22 Jun 2024 21:12:20,049 INFO : Done updating previously imported sample file data.
22 Jun 2024 21:12:20,865 INFO : All the related sampleFiles for /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-22_20-43-40.sky.zip have been updated with newer data.
22 Jun 2024 21:12:20,865 INFO : Deleting /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-22_20-43-40.sky.zip
22 Jun 2024 21:12:20,865 INFO : Deleting directory /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-22_20-43-40
22 Jun 2024 21:12:20,866 INFO : Creating and populating temp tables for Proportion values
22 Jun 2024 21:12:20,871 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
22 Jun 2024 21:12:20,877 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
22 Jun 2024 21:12:20,882 INFO : Cleaning up temp tables
22 Jun 2024 21:12:20,893 INFO : Completed import of Skyline document from 2024-0622-TBI Plasma EV_2024-06-22_21-13-17.sky.zip
22 Jun 2024 21:12:20,895 INFO : 100% Done
22 Jun 2024 21:12:20,920 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'