22 Jun 2024 20:42:39,637 DEBUG: Resetting Job ID: 4b864658-1340-103d-86c9-dc22ffcd69ea
22 Jun 2024 20:42:39,657 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
22 Jun 2024 20:42:39,658 INFO : Starting to import Skyline document from 2024-0622-TBI Plasma EV_2024-06-22_20-43-40.sky.zip
22 Jun 2024 20:42:39,658 INFO : Expanding Enolase-PRTC.blib
22 Jun 2024 20:42:39,660 INFO : Expanding 2024-0622-TBI Plasma EV.skyd
22 Jun 2024 20:42:39,734 INFO : Expanding 2024-0622-TBI Plasma EV.sky
22 Jun 2024 20:42:39,739 INFO : Reading Skyline file, 2024-0622-TBI Plasma EV.sky, to determine if the TransitionChromInfos in the document should be stored...
22 Jun 2024 20:42:39,744 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
22 Jun 2024 20:42:39,744 WARN : The version of this Skyline document is 23.13. This is newer than the highest supported version 23.1
22 Jun 2024 20:42:39,746 INFO : 2% Done
22 Jun 2024 20:42:39,773 DEBUG: Starting to load chromatogram headers
22 Jun 2024 20:42:39,773 DEBUG: Done loading chromatogram headers
22 Jun 2024 20:42:39,949 INFO : Inserting iRT standards
22 Jun 2024 20:42:39,950 INFO : Inserting sp|P00924|ENO1_YEAST
22 Jun 2024 20:42:39,957 INFO : 6% Done
22 Jun 2024 20:42:39,976 INFO : 10% Done
22 Jun 2024 20:42:39,996 INFO : 13% Done
22 Jun 2024 20:42:40,010 INFO : 17% Done
22 Jun 2024 20:42:40,021 DEBUG: Total peptides inserted: 4
22 Jun 2024 20:42:40,021 INFO : Inserting PRTC
22 Jun 2024 20:42:40,026 INFO : 20% Done
22 Jun 2024 20:42:40,038 INFO : 22% Done
22 Jun 2024 20:42:40,050 INFO : 25% Done
22 Jun 2024 20:42:40,062 INFO : 28% Done
22 Jun 2024 20:42:40,074 INFO : 31% Done
22 Jun 2024 20:42:40,086 INFO : 34% Done
22 Jun 2024 20:42:40,098 INFO : 37% Done
22 Jun 2024 20:42:40,110 INFO : 40% Done
22 Jun 2024 20:42:40,123 INFO : 43% Done
22 Jun 2024 20:42:40,136 INFO : 46% Done
22 Jun 2024 20:42:40,149 INFO : 49% Done
22 Jun 2024 20:42:40,161 INFO : 51% Done
22 Jun 2024 20:42:40,173 INFO : 54% Done
22 Jun 2024 20:42:40,186 INFO : 58% Done
22 Jun 2024 20:42:40,195 DEBUG: Total peptides inserted: 14
22 Jun 2024 20:42:40,195 INFO : Inserting sp|P00761|TRYP_PIG
22 Jun 2024 20:42:40,200 INFO : 60% Done
22 Jun 2024 20:42:40,210 DEBUG: Total peptides inserted: 1
22 Jun 2024 20:42:40,210 INFO : Done parsing Skyline document.
22 Jun 2024 20:42:40,211 INFO : Updating previously imported data for 6 old sample files.
22 Jun 2024 20:42:40,211 DEBUG: Found data for the following old sample files in the QC folder:
22 Jun 2024 20:42:40,211 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-002.raw
22 Jun 2024 20:42:40,211 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-001.raw
22 Jun 2024 20:42:40,211 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-003.raw
22 Jun 2024 20:42:40,211 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G2-7555-02.raw
22 Jun 2024 20:42:40,211 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G3-7375-03.raw
22 Jun 2024 20:42:40,211 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-G1-7638-01.raw
22 Jun 2024 20:42:42,319 INFO : 98% Done
22 Jun 2024 20:42:42,319 INFO : Done updating previously imported sample file data.
22 Jun 2024 20:42:43,187 INFO : All the related sampleFiles for /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-22_20-13-48.sky.zip have been updated with newer data.
22 Jun 2024 20:42:43,187 INFO : Deleting /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-22_20-13-48.sky.zip
22 Jun 2024 20:42:43,187 INFO : Deleting directory /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-22_20-13-48
22 Jun 2024 20:42:43,188 INFO : Creating and populating temp tables for Proportion values
22 Jun 2024 20:42:43,193 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
22 Jun 2024 20:42:43,199 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
22 Jun 2024 20:42:43,203 INFO : Cleaning up temp tables
22 Jun 2024 20:42:43,204 INFO : Completed import of Skyline document from 2024-0622-TBI Plasma EV_2024-06-22_20-43-40.sky.zip
22 Jun 2024 20:42:43,208 INFO : 100% Done
22 Jun 2024 20:42:43,235 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'