22 Jun 2024 17:57:59,977 DEBUG: Resetting Job ID: 5ebdf08e-1329-103d-86c9-dc22ffcd69ea
22 Jun 2024 17:58:00,002 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'
22 Jun 2024 17:58:00,004 INFO : Starting to import Skyline document from 2024-0622-TBI Plasma EV_2024-06-22_17-59-00.sky.zip
22 Jun 2024 17:58:00,004 INFO : Expanding Enolase-PRTC.blib
22 Jun 2024 17:58:00,006 INFO : Expanding 2024-0622-TBI Plasma EV.skyd
22 Jun 2024 17:58:00,036 INFO : Expanding 2024-0622-TBI Plasma EV.sky
22 Jun 2024 17:58:00,039 INFO : Reading Skyline file, 2024-0622-TBI Plasma EV.sky, to determine if the TransitionChromInfos in the document should be stored...
22 Jun 2024 17:58:00,041 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
22 Jun 2024 17:58:00,041 WARN : The version of this Skyline document is 23.13. This is newer than the highest supported version 23.1
22 Jun 2024 17:58:00,043 INFO : 4% Done
22 Jun 2024 17:58:00,053 DEBUG: Starting to load chromatogram headers
22 Jun 2024 17:58:00,054 DEBUG: Done loading chromatogram headers
22 Jun 2024 17:58:00,225 INFO : Inserting iRT standards
22 Jun 2024 17:58:00,226 INFO : Inserting sp|P00924|ENO1_YEAST
22 Jun 2024 17:58:00,231 INFO : 8% Done
22 Jun 2024 17:58:00,241 INFO : 12% Done
22 Jun 2024 17:58:00,251 INFO : 15% Done
22 Jun 2024 17:58:00,259 INFO : 18% Done
22 Jun 2024 17:58:00,266 DEBUG: Total peptides inserted: 4
22 Jun 2024 17:58:00,266 INFO : Inserting PRTC
22 Jun 2024 17:58:00,269 INFO : 21% Done
22 Jun 2024 17:58:00,276 INFO : 24% Done
22 Jun 2024 17:58:00,283 INFO : 26% Done
22 Jun 2024 17:58:00,291 INFO : 29% Done
22 Jun 2024 17:58:00,300 INFO : 32% Done
22 Jun 2024 17:58:00,308 INFO : 34% Done
22 Jun 2024 17:58:00,315 INFO : 37% Done
22 Jun 2024 17:58:00,323 INFO : 40% Done
22 Jun 2024 17:58:00,331 INFO : 44% Done
22 Jun 2024 17:58:00,339 INFO : 47% Done
22 Jun 2024 17:58:00,347 INFO : 49% Done
22 Jun 2024 17:58:00,356 INFO : 52% Done
22 Jun 2024 17:58:00,363 INFO : 55% Done
22 Jun 2024 17:58:00,371 INFO : 58% Done
22 Jun 2024 17:58:00,376 DEBUG: Total peptides inserted: 14
22 Jun 2024 17:58:00,376 INFO : Inserting sp|P00761|TRYP_PIG
22 Jun 2024 17:58:00,380 INFO : 60% Done
22 Jun 2024 17:58:00,386 DEBUG: Total peptides inserted: 1
22 Jun 2024 17:58:00,386 INFO : Done parsing Skyline document.
22 Jun 2024 17:58:00,386 INFO : Updating previously imported data for 1 old sample files.
22 Jun 2024 17:58:00,386 DEBUG: Found data for the following old sample files in the QC folder:
22 Jun 2024 17:58:00,386 DEBUG: D:\mjm\2024-0622-TBI Plasma EV\Ast-0622-TBI-Pilot-Equil-001.raw
22 Jun 2024 17:58:00,400 INFO : 98% Done
22 Jun 2024 17:58:00,400 INFO : Done updating previously imported sample file data.
22 Jun 2024 17:58:01,236 INFO : All the related sampleFiles for /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-22_17-29-09.sky.zip have been updated with newer data.
22 Jun 2024 17:58:01,236 INFO : Deleting /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-22_17-29-09.sky.zip
22 Jun 2024 17:58:01,236 INFO : Deleting directory /data/labkey/files/TPAD2.0/Project 1/2024-0622 TBI Pilot-Plasma EV/QC 2024-0622 TBI Pilot-Plasma EV/@files/2024-0622-TBI Plasma EV_2024-06-22_17-29-09
22 Jun 2024 17:58:01,236 INFO : Creating and populating temp tables for Proportion values
22 Jun 2024 17:58:01,242 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
22 Jun 2024 17:58:01,245 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
22 Jun 2024 17:58:01,248 INFO : Cleaning up temp tables
22 Jun 2024 17:58:01,534 INFO : Completed import of Skyline document from 2024-0622-TBI Plasma EV_2024-06-22_17-59-00.sky.zip
22 Jun 2024 17:58:01,535 INFO : 100% Done
22 Jun 2024 17:58:01,561 INFO : Successfully completed task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'