Lumos_8mz_staggered_yeast_EncyclopeDIA_carafe_2024-10-11_15-06-52.sky.zip

MacCoss - Carafe
Lumos_8mz_staggered_yeast_EncyclopeDIA_carafe_2024-10-11_15-06-52.sky.zip   1 version
 
4,358 proteins, 44,140 peptides, 44,140 precursors, 353,069 transitions  -  3 replicates  -  Skyline (64-bit) 24.1.0.199 (6a0775ef83)
Protein Note/Annotations
 
sp|P05739|RL6B_YEASTLarge ribosomal subunit protein eL6B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL6B PE=1 SV=4
Peptide Note/Annotations
Precursor Note/Annotations
WYPSEDVAAPK
01261.5979 
WYPSEDVAAPK
light2+631.80621261.597980.0000 
WYPSEDVAAPKK
11389.6929 
WYPSEDVAAPKK
light3+464.23821389.692980.0000 
ASLVPGTVLILLAGR
01478.9184 
ASLVPGTVLILLAGR
light3+493.98011478.918480.0000 
HLEDNTLLVTGPFK
01582.8355 
HLEDNTLLVTGPFK
light2+792.42501582.835580.0000 
VNGVPLRR
1909.5508 
VNGVPLRR
light2+455.7827909.550880.0000 
YVIATSTK
0881.4858 
YVIATSTK
light2+441.7502881.485880.0000 
VSVEGVNVEK
01058.5608 
VSVEGVNVEK
light2+530.28771058.560880.0000 
KEANLFPEQQTK
11431.7358 
KEANLFPEQQTK
light2+716.87521431.735880.0000 
EANLFPEQQTK
01303.6408 
EANLFPEQQTK
light2+652.82771303.640880.0000 
VEDQKVVDK
11058.5608 
VEDQKVVDK
light2+530.28771058.560880.0000 
ALLAEIKK
1884.5695 
ALLAEIKK
light2+443.2920884.569580.0000 
QYLSASFSLK
01142.5972 
QYLSASFSLK
light2+572.30591142.597280.0000 
NGDKPHLLK
11020.5716 
NGDKPHLLK
light2+511.29311020.571680.0000 
sp|P06844|SPT3_YEASTProtein SPT3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SPT3 PE=1 SV=1
Peptide Note/Annotations
Precursor Note/Annotations
GQVIEILLQSNK
01340.7664 
GQVIEILLQSNK
light2+671.39051340.766480.0000 
DQDASAGVASGTGNPGAGGEDDLKK
12316.0466 
DQDASAGVASGTGNPGAGGEDDLKK
light3+773.02282316.046680.0000 
EQVLQTQK
0972.5240 
EQVLQTQK
light2+487.2693972.524080.0000 
SQQSSQDNTNFEFASSTLHR
02283.0152 
SQQSSQDNTNFEFASSTLHR
light3+762.01232283.015280.0000 
LFDGPENVINPLKPR
11707.9308 
LFDGPENVINPLKPR
light3+570.31751707.930880.0000 
VLQTIDMR
0974.5219 
VLQTIDMR
light2+488.2682974.521980.0000 
sp|P07263|SYH_YEASTHistidine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HTS1 PE=1 SV=2
Peptide Note/Annotations
Precursor Note/Annotations
GTKDWADSDMVIR
11492.6980 
GTKDWADSDMVIR
light3+498.57331492.698080.0000 
DWADSDMVIR
01206.5339 
DWADSDMVIR
light2+604.27421206.533980.0000 
KHGGVTIDTPVFELR
11667.8995 
KHGGVTIDTPVFELR
light3+556.97381667.899580.0000 
HGGVTIDTPVFELR
01539.8045 
HGGVTIDTPVFELR
light2+770.90951539.804580.0000 
LIYNLEDQGGELCSLR
01878.9146 
LIYNLEDQGGELCSLR
light2+940.46461878.914680.0000 
YDLTVPFAR
01080.5604 
YDLTVPFAR
light2+541.28751080.560480.0000 
YVAMNNIQSIK
01279.6595 
YVAMNNIQSIK
light2+640.83701279.659580.0000 
YVAMNNIQSIKR
11435.7606 
YVAMNNIQSIKR
light3+479.59411435.760680.0000 
KILDGIFQIAGVK
11400.8391 
KILDGIFQIAGVK
light3+467.95371400.839180.0000 
ILDGIFQIAGVK
01272.7442 
ILDGIFQIAGVK
light2+637.37941272.744280.0000 
ILDGIFQIAGVKDEDVR
11887.0102 
ILDGIFQIAGVKDEDVR
light3+630.01071887.010280.0000 
ISSAVDKLDK
11074.5921 
ISSAVDKLDK
light2+538.30331074.592180.0000 
SPWEAVK
0815.4178 
SPWEAVK
light2+408.7162815.417880.0000 
SPWEAVKK
1943.5127 
SPWEAVKK
light2+472.7636943.512780.0000 
EMTEEKGQSEETADK
11710.7254 
EMTEEKGQSEETADK
light3+571.24911710.725480.0000 
GQSEETADKIGEYVK
11652.7893 
GQSEETADKIGEYVK
light2+827.40191652.789380.0000 
EIHAVLSADANITSNEK
01810.9061 
EIHAVLSADANITSNEK
light3+604.64261810.906180.0000 
AKQGLDDIATLMK
11402.7490 
AKQGLDDIATLMK
light3+468.59031402.749080.0000 
QGLDDIATLMK
01203.6169 
QGLDDIATLMK
light2+602.81571203.616980.0000 
SAEDASEFVGVGSIAAGGR
01778.8435 
SAEDASEFVGVGSIAAGGR
light2+890.42901778.843580.0000 
YDNLVNMFSEASGK
01573.7083 
YDNLVNMFSEASGK
light2+787.86141573.708380.0000 
YDNLVNMFSEASGKK
11701.8032 
YDNLVNMFSEASGKK
light3+568.27501701.803280.0000 
KSTQIPCVGISFGVER
11776.9193 
KSTQIPCVGISFGVER
light3+593.31371776.919380.0000 
STQIPCVGISFGVER
01648.8243 
STQIPCVGISFGVER
light3+550.61541648.824380.0000 
INSSTTIKPTATQVFVMAFGGGK
12354.2304 
INSSTTIKPTATQVFVMAFGGGK
light3+785.75072354.230480.0000 
DWTGYLPER
01135.5298 
DWTGYLPER
light2+568.77221135.529880.0000 
QLWDAGIEAEYVYK
01683.8144 
QLWDAGIEAEYVYK
light2+842.91451683.814480.0000 
AGCHIAVILGK
01137.6328 
AGCHIAVILGK
light2+569.82371137.632880.0000 
AGCHIAVILGKEEYLEGK
11986.0244 
AGCHIAVILGKEEYLEGK
light4+497.51341986.024480.0000 
EEYLEGK
0866.4022 
EEYLEGK
light2+434.2084866.402280.0000 
RLGQEFADDDGELVSAADIVPIVQEK
12813.4083 
RLGQEFADDDGELVSAADIVPIVQEK
light3+938.81002813.408380.0000 
LGQEFADDDGELVSAADIVPIVQEK
02657.3072 
LGQEFADDDGELVSAADIVPIVQEK
light3+886.77632657.307280.0000 
LSQIHEDGLNEVTR
01609.8060 
LSQIHEDGLNEVTR
light3+537.60931609.806080.0000 
sp|P07276|RAD2_YEASTDNA repair protein RAD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RAD2 PE=1 SV=2
Peptide Note/Annotations
Precursor Note/Annotations
EQLETIFPNSMDFSR
01812.8353 
EQLETIFPNSMDFSR
light2+907.42491812.835380.0000 
FQIDMVK
0879.4524 
FQIDMVK
light2+440.7335879.452480.0000 
SDEILIPLIR
01167.6863 
SDEILIPLIR
light2+584.85041167.686380.0000 
INEFFPR
0921.4709 
INEFFPR
light2+461.7427921.470980.0000 
sp|P0CH08|RL40A_YEAST / sp|P0CH09|RL40B_YEASTUbiquitin-ribosomal protein eL40A fusion protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL40A PE=1 SV=1
Ubiquitin-ribosomal protein eL40B fusion protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL40B PE=1 SV=1
Peptide Note/Annotations
Precursor Note/Annotations
TITLEVESSDTIDNVK
01762.8836 
TITLEVESSDTIDNVK
light2+882.44911762.883680.0000 
IQDKEGIPPDQQR
11522.7740 
IQDKEGIPPDQQR
light3+508.59861522.774080.0000 
TLSDYNIQK
01080.5451 
TLSDYNIQK
light2+541.27981080.545180.0000 
ESTLHLVLR
01066.6135 
ESTLHLVLR
light2+534.31401066.613580.0000 
CGHTNQLRPK
11209.6037 
CGHTNQLRPK
light3+404.20851209.603780.0000 
sp|P0CX80|MTCU1_YEAST / sp|P0CX81|MTCU2_YEASTCopper metallothionein 1-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CUP1-1 PE=1 SV=1
Copper metallothionein 1-2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CUP1-2 PE=1 SV=1
Peptide Note/Annotations
Precursor Note/Annotations
SCSCPTGCNSDDK
01486.5123 
SCSCPTGCNSDDK
light2+744.26341486.512380.0000 
SCSCPTGCNSDDKCPCGNK
12202.7857 
SCSCPTGCNSDDKCPCGNK
light3+735.26922202.785780.0000 
sp|P10962|MAK16_YEASTProtein MAK16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MAK16 PE=1 SV=2
Peptide Note/Annotations
Precursor Note/Annotations
IKAPNGQNFCR
11303.6455 
IKAPNGQNFCR
light3+435.55581303.645580.0000 
APNGQNFCR
01062.4665 
APNGQNFCR
light2+532.24051062.466580.0000 
NEYNVTGLCTR
01325.6034 
NEYNVTGLCTR
light2+663.80901325.603480.0000 
QSCPLANSK
01003.4757 
QSCPLANSK
light2+502.74511003.475780.0000 
ALQQIDEHLLHWSK
01716.8948 
ALQQIDEHLLHWSK
light3+573.30551716.894880.0000 
LTQVMITER
01089.5852 
LTQVMITER
light2+545.79991089.585280.0000 
HYVGVAPK
0869.4759 
HYVGVAPK
light2+435.7452869.475980.0000 
SGAYGDKPLNVDEK
11491.7205 
SGAYGDKPLNVDEK
light3+498.24751491.720580.0000 
sp|P13663|DHAS_YEASTAspartate-semialdehyde dehydrogenase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HOM2 PE=1 SV=1
Peptide Note/Annotations
Precursor Note/Annotations
KIAGVLGATGSVGQR
11412.8100 
KIAGVLGATGSVGQR
light3+471.94391412.810080.0000 
IAGVLGATGSVGQR
01284.7150 
IAGVLGATGSVGQR
light2+643.36481284.715080.0000 
FILLLANHPHFELK
01690.9559 
FILLLANHPHFELK
light4+423.74621690.955980.0000 
KYVDAVNWK
11121.5869 
KYVDAVNWK
light2+561.80071121.586980.0000 
YVDAVNWK
0993.4920 
YVDAVNWK
light2+497.7533993.492080.0000 
YVDAVNWKQTDLLPESATDIIVSECK
12993.4692 
YVDAVNWKQTDLLPESATDIIVSECK
light3+998.83032993.469280.0000 
QTDLLPESATDIIVSECK
02017.9878 
QTDLLPESATDIIVSECK
light3+673.66992017.987880.0000 
EFMEAGIAIVSNAK
01478.7439 
EFMEAGIAIVSNAK
light2+740.37921478.743980.0000 
REQDVPLIVPVVNPEHLDIVAQK
12607.4384 
REQDVPLIVPVVNPEHLDIVAQK
light3+870.15342607.438480.0000 
EQDVPLIVPVVNPEHLDIVAQK
02451.3373 
EQDVPLIVPVVNPEHLDIVAQK
light3+818.11972451.337380.0000 
EQDVPLIVPVVNPEHLDIVAQKLDTAK
12979.6281 
EQDVPLIVPVVNPEHLDIVAQKLDTAK
light4+745.91432979.628180.0000 
KILAPLAEDK
11096.6492 
KILAPLAEDK
light2+549.33191096.649280.0000 
ILAPLAEDK
0968.5542 
ILAPLAEDK
light2+485.2844968.554280.0000 
ILAPLAEDKTHVK
11433.8242 
ILAPLAEDKTHVK
light3+478.94871433.824280.0000 
LLTPEEIK
0941.5433 
LLTPEEIK
light2+471.7790941.543380.0000 
VAVSDGHTECISLR
01542.7460 
VAVSDGHTECISLR
light2+772.38031542.746080.0000 
NRPAPSVEQVK
11223.6622 
NRPAPSVEQVK
light3+408.89471223.662280.0000 
PAPSVEQVK
0953.5182 
PAPSVEQVK
light2+477.7664953.518280.0000 
EYVCDAYK
01046.4379 
EYVCDAYK
light2+524.22621046.437980.0000 
LGCHSAPK
0868.4225 
LGCHSAPK
light2+435.2185868.422580.0000 
QTIHVLEQPDRPQPR
11812.9595 
QTIHVLEQPDRPQPR
light3+605.32711812.959580.0000 
DSGYGVSVGR
0995.4672 
DSGYGVSVGR
light2+498.7409995.467280.0000 
IREDPLLDFK
11244.6765 
IREDPLLDFK
light3+415.89941244.676580.0000 
EDPLLDFK
0975.4913 
EDPLLDFK
light2+488.7529975.491380.0000 
sp|P16664|RGP1_YEASTGuanine nucleotide exchange factor subunit RGP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RGP1 PE=1 SV=2
Peptide Note/Annotations
Precursor Note/Annotations
HLGSQHELFNYK
01471.7208 
HLGSQHELFNYK
light3+491.58091471.720880.0000 
NFIELVESNQNVSR
01647.8216 
NFIELVESNQNVSR
light2+824.91811647.821680.0000 
VSLSAPFYK
01010.5437 
VSLSAPFYK
light2+506.27911010.543780.0000 
SPTNQITGQFK
01219.6197 
SPTNQITGQFK
light2+610.81711219.619780.0000 
sp|P17119|KAR3_YEASTKinesin-like protein KAR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=KAR3 PE=1 SV=1
Peptide Note/Annotations
Precursor Note/Annotations
GTANLIYGNQK
01177.6091 
GTANLIYGNQK
light2+589.81181177.609180.0000 
TQAILFEK
0948.5280 
TQAILFEK
light2+475.2713948.528080.0000 
ASLLDKIEEVR
11271.7085 
ASLLDKIEEVR
light3+424.91011271.708580.0000 
HMQEIESIKK
11241.6438 
HMQEIESIKK
light3+414.88851241.643880.0000 
ELEEYIK
0922.4648 
ELEEYIK
light2+462.2397922.464880.0000 
INVSQVVGDR
01085.5829 
INVSQVVGDR
light2+543.79871085.582980.0000