Skyline document import - 220909_PlasmaVsSerum.sky.zip: /TAMADOR/UW Medicine - NIDDK U01 Diabetes Assays/Glucagon and Oxyntomodulin

Skyline document import - 220909_PlasmaVsSerum.sky.zip

Glucagon and Oxyntomodulin

Job Status

Created:

2024-11-18 13:56:10

Modified:

2024-11-19 13:15:56

Email:

becker78@uw.edu

Status:

ERROR

Info:

NoCut: Value is too long for column 'NoCut', a maximum length of 20 is allowed. The supplied value, 'RHKDESTNQCUGPAVILMFYW', was 21 characters long.

Description:

Skyline document import - 220909_PlasmaVsSerum.sky.zip

File Path:

/data/labkey/files/TAMADOR/UW Medicine - NIDDK U01 Diabetes Assays/Glucagon and Oxyntomodulin/@files/220909_PlasmaVsSerum.sky_2024-11-18_13-56-09.log

Files:

220909_PlasmaVsSerum.sky_2024-11-18_13-56-09.log

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Log File

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18 Nov 2024 13:56:10,405 DEBUG: Resetting Job ID: 5ebc5b4f-8825-103d-a53a-8d1d6db29c7c

18 Nov 2024 13:59:22,492 INFO : Starting to run task 'org.labkey.targetedms.pipeline.TargetedMSImportTask' at location 'webserver-high-priority'

18 Nov 2024 13:59:22,494 INFO : Starting to import Skyline document from 220909_PlasmaVsSerum.sky.zip

18 Nov 2024 13:59:22,494 INFO : Expanding 220909_PlasmaVsSerum.skyd

18 Nov 2024 13:59:22,498 INFO : Expanding 220909_PlasmaVsSerum.sky.view

18 Nov 2024 13:59:22,499 INFO : Expanding 220909_PlasmaVsSerum.sky

18 Nov 2024 13:59:22,500 INFO : Reading Skyline file, 220909_PlasmaVsSerum.sky, to determine if the TransitionChromInfos in the document should be stored...

18 Nov 2024 13:59:22,502 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored

18 Nov 2024 13:59:22,503 INFO : 10% Done

18 Nov 2024 13:59:22,511 DEBUG: Starting to load chromatogram headers

18 Nov 2024 13:59:22,512 DEBUG: Done loading chromatogram headers

18 Nov 2024 13:59:22,783 ERROR: Import failed
org.labkey.api.query.RuntimeValidationException: NoCut: Value is too long for column 'NoCut', a maximum length of 20 is allowed. The supplied value, 'RHKDESTNQCUGPAVILMFYW', was 21 characters long.
	at org.labkey.api.data.Table.insert(Table.java:853)
	at org.labkey.targetedms.SkylineDocImporter.insertDigestSettings(SkylineDocImporter.java:814)
	at org.labkey.targetedms.SkylineDocImporter.insertPeptideSettings(SkylineDocImporter.java:768)
	at org.labkey.targetedms.SkylineDocImporter.importSkylineDoc(SkylineDocImporter.java:356)
	at org.labkey.targetedms.SkylineDocImporter.importRun(SkylineDocImporter.java:249)
	at org.labkey.targetedms.pipeline.TargetedMSImportTask.run(TargetedMSImportTask.java:63)
	at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:833)
	at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1075)
	at org.labkey.pipeline.mule.PipelineJobRunner.run(PipelineJobRunner.java:40)
	at jdk.internal.reflect.GeneratedMethodAccessor1864.invoke(Unknown Source)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.mule.impl.model.resolvers.DynamicEntryPoint.invokeMethod(DynamicEntryPoint.java:312)
	at org.mule.impl.model.resolvers.DynamicEntryPoint.invoke(DynamicEntryPoint.java:259)
	at org.mule.impl.DefaultLifecycleAdapter.intercept(DefaultLifecycleAdapter.java:193)
	at org.mule.impl.InterceptorsInvoker.execute(InterceptorsInvoker.java:47)
	at org.mule.impl.model.DefaultMuleProxy.run(DefaultMuleProxy.java:470)
	at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
	at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$CallerRunsPolicy.rejectedExecution(ThreadPoolExecutor.java:1486)
	at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:391)
	at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.execute(ThreadPoolExecutor.java:865)
	at org.mule.impl.work.ScheduleWorkExecutor.doExecute(ScheduleWorkExecutor.java:39)
	at org.mule.impl.work.MuleWorkManager.executeWork(MuleWorkManager.java:277)
	at org.mule.impl.work.MuleWorkManager.scheduleWork(MuleWorkManager.java:244)
	at org.mule.impl.model.seda.SedaComponent.run(SedaComponent.java:483)
	at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
	at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
	at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:675)
	at java.base/java.lang.Thread.run(Thread.java:840)
Caused by: NoCut: Value is too long for column 'NoCut', a maximum length of 20 is allowed. The supplied value, 'RHKDESTNQCUGPAVILMFYW', was 21 characters long.
	at org.labkey.api.query.RuntimeValidationException.<init>(RuntimeValidationException.java:36)
	... 29 more

18 Nov 2024 13:59:22,807 INFO : Failed to complete task 'org.labkey.targetedms.pipeline.TargetedMSImportTask'

18 Nov 2024 13:59:22,808 ERROR: NoCut: Value is too long for column 'NoCut', a maximum length of 20 is allowed. The supplied value, 'RHKDESTNQCUGPAVILMFYW', was 21 characters long.
org.labkey.api.pipeline.PipelineJobException: NoCut: Value is too long for column 'NoCut', a maximum length of 20 is allowed. The supplied value, 'RHKDESTNQCUGPAVILMFYW', was 21 characters long.
	at org.labkey.targetedms.SkylineDocImporter.importRun(SkylineDocImporter.java:276)
	at org.labkey.targetedms.pipeline.TargetedMSImportTask.run(TargetedMSImportTask.java:63)
	at org.labkey.api.pipeline.PipelineJob.runActiveTask(PipelineJob.java:833)
	at org.labkey.api.pipeline.PipelineJob.run(PipelineJob.java:1075)
	at org.labkey.pipeline.mule.PipelineJobRunner.run(PipelineJobRunner.java:40)
	at jdk.internal.reflect.GeneratedMethodAccessor1864.invoke(Unknown Source)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.mule.impl.model.resolvers.DynamicEntryPoint.invokeMethod(DynamicEntryPoint.java:312)
	at org.mule.impl.model.resolvers.DynamicEntryPoint.invoke(DynamicEntryPoint.java:259)
	at org.mule.impl.DefaultLifecycleAdapter.intercept(DefaultLifecycleAdapter.java:193)
	at org.mule.impl.InterceptorsInvoker.execute(InterceptorsInvoker.java:47)
	at org.mule.impl.model.DefaultMuleProxy.run(DefaultMuleProxy.java:470)
	at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
	at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$CallerRunsPolicy.rejectedExecution(ThreadPoolExecutor.java:1486)
	at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:391)
	at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.execute(ThreadPoolExecutor.java:865)
	at org.mule.impl.work.ScheduleWorkExecutor.doExecute(ScheduleWorkExecutor.java:39)
	at org.mule.impl.work.MuleWorkManager.executeWork(MuleWorkManager.java:277)
	at org.mule.impl.work.MuleWorkManager.scheduleWork(MuleWorkManager.java:244)
	at org.mule.impl.model.seda.SedaComponent.run(SedaComponent.java:483)
	at org.mule.impl.work.WorkerContext.run(WorkerContext.java:310)
	at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
	at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:675)
	at java.base/java.lang.Thread.run(Thread.java:840)
Caused by: org.labkey.api.query.RuntimeValidationException: NoCut: Value is too long for column 'NoCut', a maximum length of 20 is allowed. The supplied value, 'RHKDESTNQCUGPAVILMFYW', was 21 characters long.
	at org.labkey.api.data.Table.insert(Table.java:853)
	at org.labkey.targetedms.SkylineDocImporter.insertDigestSettings(SkylineDocImporter.java:814)
	at org.labkey.targetedms.SkylineDocImporter.insertPeptideSettings(SkylineDocImporter.java:768)
	at org.labkey.targetedms.SkylineDocImporter.importSkylineDoc(SkylineDocImporter.java:356)
	at org.labkey.targetedms.SkylineDocImporter.importRun(SkylineDocImporter.java:249)
	... 24 more
Caused by: NoCut: Value is too long for column 'NoCut', a maximum length of 20 is allowed. The supplied value, 'RHKDESTNQCUGPAVILMFYW', was 21 characters long.
	at org.labkey.api.query.RuntimeValidationException.<init>(RuntimeValidationException.java:36)
	... 29 more