16 May 2025 09:25:43,949 INFO : Copying experiment "Combination of in vivo and in vitro phosphoproteomics determines the PP2A target repertoire on proteome scale" from folder /UNIFR - Dengjel lab/OBIPhA - PP2 to /Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2
16 May 2025 09:25:43,949 INFO : =======================================
16 May 2025 09:25:43,961 DEBUG: Resetting Job ID: 19ad0f87-14a0-103e-9c0d-1cc91aa94300
16 May 2025 09:25:43,979 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
16 May 2025 09:25:43,979 INFO :
16 May 2025 09:25:43,979 INFO : Exporting experiment.
16 May 2025 09:25:49,920 INFO : Exporting files metadata.
16 May 2025 09:25:49,920 DEBUG: [/UNIFR - Dengjel lab/OBIPhA - PP2] Writing files metadata to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/export
16 May 2025 09:25:49,927 INFO :
16 May 2025 09:25:49,927 INFO : Experiment export completed successfully.
16 May 2025 09:25:49,928 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
16 May 2025 09:25:49,945 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
16 May 2025 09:25:49,945 INFO :
16 May 2025 09:25:49,945 INFO : Importing experiment.
16 May 2025 09:25:49,978 DEBUG: [/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2] Importing folder properties from: /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/export
16 May 2025 09:25:49,979 INFO : Loading folder properties (folder type, settings and active modules)
16 May 2025 09:25:49,979 DEBUG: [/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2] Folder type: Targeted MS
16 May 2025 09:25:49,979 DEBUG: [/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2] Active modules: TargetedMS, Query, PanoramaPublic, FileContent, Search, Protein, Core, Issues, Experiment, Pipeline, Wiki, Announcements, API
16 May 2025 09:25:50,020 INFO : Done importing folder properties (folder type, settings and active modules)
16 May 2025 09:25:50,021 INFO : Loading container specific module properties
16 May 2025 09:25:50,026 INFO : Done importing container specific module properties
16 May 2025 09:25:50,027 INFO : Loading queries
16 May 2025 09:25:50,073 INFO : 1 query imported
16 May 2025 09:25:50,073 INFO : Done importing queries
16 May 2025 09:25:50,074 INFO : Loading etl definitions
16 May 2025 09:25:50,075 INFO : Loading wikis
16 May 2025 09:25:50,080 INFO : 1 wiki imported
16 May 2025 09:25:50,080 INFO : Done importing wikis
16 May 2025 09:25:50,081 INFO : Starting Data Class Importer
16 May 2025 09:25:50,081 INFO : No types XAR file to process.
16 May 2025 09:25:50,081 INFO : Finished Data Class Importer
16 May 2025 09:25:50,082 INFO : Starting to copy files to @files
16 May 2025 09:25:50,082 INFO : Copied 0 files to @files
16 May 2025 09:25:50,083 INFO : Starting to copy files to @assayfiles
16 May 2025 09:25:50,083 INFO : Copied 0 files to @assayfiles
16 May 2025 09:25:50,083 INFO : Ensuring exp.data rows exist for imported files
16 May 2025 09:25:50,142 INFO : Starting Sample Type Importer
16 May 2025 09:25:50,142 INFO : No types XAR file to process.
16 May 2025 09:25:50,142 INFO : Finished Sample Type Importer
16 May 2025 09:25:50,143 INFO : Loading xar
16 May 2025 09:25:51,809 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-15054:TargetedMS.ImportSkyZip'
16 May 2025 09:25:51,811 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-15054:TargetedMS.ImportSkyZip.Core'
16 May 2025 09:25:51,812 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-15054:TargetedMS.ImportSkyZip.Output'
16 May 2025 09:25:51,812 DEBUG: Protocol import complete
16 May 2025 09:25:51,813 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-15054:Combination+of+in+vivo+and+in+vitro+phosphoproteomics+determines+the+PP2A+target+repertoire+on+proteome+scale'
16 May 2025 09:25:51,813 DEBUG: Experiment/Run group import complete
16 May 2025 09:25:51,818 DEBUG: Protocol action set import complete
16 May 2025 09:25:51,824 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-15054:TargetedMS.ImportSkyZip'
16 May 2025 09:25:51,828 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-15054:6fd39f16-1450-103e-9c0d-1cc91aa94300'
16 May 2025 09:25:51,831 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-15054:6fd39e6a-1450-103e-9c0d-1cc91aa94300'
16 May 2025 09:25:51,831 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-15054:TargetedMS.ImportSkyZip.Core'
16 May 2025 09:25:51,832 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-15054:TargetedMS.ImportSkyZip.Output'
16 May 2025 09:25:51,833 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-15054:c69b8284-1450-103e-9c0d-1cc91aa94300'
16 May 2025 09:25:51,838 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2025/UNIFR%20Dengjel%20lab%20-%20OBIPhA%20-%20PP2/@files/export/xar/experiments_and_runs.xar.exploded/Run266133/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.skyd into the system
16 May 2025 09:25:51,838 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2025/UNIFR%20Dengjel%20lab%20-%20OBIPhA%20-%20PP2/@files/export/xar/experiments_and_runs.xar.exploded/Run266133/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.skyd into the system
16 May 2025 09:25:51,838 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2025/UNIFR%20Dengjel%20lab%20-%20OBIPhA%20-%20PP2/@files/export/xar/experiments_and_runs.xar.exploded/Run266133/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51.sky.zip into the system
16 May 2025 09:25:51,839 INFO : Starting import from 20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51.sky.zip
16 May 2025 09:25:51,841 INFO : Starting to import Skyline document from 20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51.sky.zip
16 May 2025 09:25:51,878 INFO : Expanding UNIPROT_Human_Jan_2022.protdb
16 May 2025 09:25:54,159 INFO : Expanding 20240709_AM_PRM-assay.blib
16 May 2025 09:25:54,166 INFO : Expanding 20240709_as_prm_forupload_onelibrary.skyd
16 May 2025 09:25:54,365 INFO : Expanding 20240709_as_prm_forupload_onelibrary.sky.view
16 May 2025 09:25:54,366 INFO : Expanding 20240709_as_prm_forupload_onelibrary.sky
16 May 2025 09:25:54,371 INFO : Expanding 20240709_as_prm_forupload_onelibrary.skyl
16 May 2025 09:25:54,373 INFO : Reading Skyline file, 20240709_as_prm_forupload_onelibrary.sky, to determine if the TransitionChromInfos in the document should be stored...
16 May 2025 09:25:54,379 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
16 May 2025 09:25:54,379 WARN : The version of this Skyline document is 24.1. This is newer than the highest supported version 23.1
16 May 2025 09:25:54,381 INFO : 1% Done
16 May 2025 09:25:54,381 INFO : Copying SKYD to temp directory for import purposes
16 May 2025 09:25:54,427 INFO : Copying complete
16 May 2025 09:25:54,428 DEBUG: Starting to load chromatogram headers
16 May 2025 09:25:54,429 DEBUG: Done loading chromatogram headers
16 May 2025 09:25:54,561 INFO : Inserting sp|O00571|DDX3X_HUMAN
16 May 2025 09:25:54,567 INFO : 7% Done
16 May 2025 09:25:54,592 INFO : 10% Done
16 May 2025 09:25:54,604 INFO : 15% Done
16 May 2025 09:25:54,627 INFO : 18% Done
16 May 2025 09:25:54,641 INFO : 20% Done
16 May 2025 09:25:54,652 INFO : 23% Done
16 May 2025 09:25:54,663 INFO : 25% Done
16 May 2025 09:25:54,676 DEBUG: Total peptides inserted: 7
16 May 2025 09:25:54,677 INFO : Inserting sp|Q14152|EIF3A_HUMAN
16 May 2025 09:25:54,680 INFO : 28% Done
16 May 2025 09:25:54,691 INFO : 31% Done
16 May 2025 09:25:54,705 INFO : 35% Done
16 May 2025 09:25:54,718 INFO : 39% Done
16 May 2025 09:25:54,731 INFO : 42% Done
16 May 2025 09:25:54,742 INFO : 45% Done
16 May 2025 09:25:54,756 INFO : 48% Done
16 May 2025 09:25:54,765 DEBUG: Total peptides inserted: 7
16 May 2025 09:25:54,765 INFO : Inserting sp|P23588|IF4B_HUMAN
16 May 2025 09:25:54,769 INFO : 51% Done
16 May 2025 09:25:54,782 INFO : 53% Done
16 May 2025 09:25:54,791 INFO : 55% Done
16 May 2025 09:25:54,802 INFO : 58% Done
16 May 2025 09:25:54,813 INFO : 61% Done
16 May 2025 09:25:54,825 INFO : 66% Done
16 May 2025 09:25:54,842 INFO : 69% Done
16 May 2025 09:25:54,852 INFO : 71% Done
16 May 2025 09:25:54,862 INFO : 72% Done
16 May 2025 09:25:54,868 INFO : 74% Done
16 May 2025 09:25:54,878 INFO : 76% Done
16 May 2025 09:25:54,889 INFO : 81% Done
16 May 2025 09:25:54,907 INFO : 84% Done
16 May 2025 09:25:54,918 INFO : 86% Done
16 May 2025 09:25:54,926 INFO : 87% Done
16 May 2025 09:25:54,933 INFO : 88% Done
16 May 2025 09:25:54,940 INFO : 92% Done
16 May 2025 09:25:54,952 INFO : 95% Done
16 May 2025 09:25:54,964 INFO : 98% Done
16 May 2025 09:25:54,975 DEBUG: Total peptides inserted: 19
16 May 2025 09:25:54,975 INFO : Done parsing Skyline document.
16 May 2025 09:25:55,052 INFO : Creating and populating temp tables for Proportion values
16 May 2025 09:25:55,056 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
16 May 2025 09:25:55,068 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
16 May 2025 09:25:55,076 INFO : Cleaning up temp tables
16 May 2025 09:25:55,100 INFO : Deleted temp copy of SKYD file
16 May 2025 09:25:55,100 INFO : Completed import of Skyline document from 20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51.sky.zip
16 May 2025 09:25:55,102 INFO : 100% Done
16 May 2025 09:25:55,105 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2025/UNIFR%20Dengjel%20lab%20-%20OBIPhA%20-%20PP2/@files/export/xar/experiments_and_runs.xar.exploded/Run266133/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51.sky.zip into the system
16 May 2025 09:25:55,344 INFO : Done importing xar
16 May 2025 09:25:55,345 INFO : Loading pages and webpart properties
16 May 2025 09:25:55,396 INFO : Done importing 3 page(s) with 4 webpart(s)
16 May 2025 09:25:55,396 INFO : Loading File Browser config
16 May 2025 09:25:55,396 INFO : Done importing File Browser config
16 May 2025 09:25:55,397 INFO : Starting Sample Status Data import
16 May 2025 09:25:55,397 INFO : No sample types XAR file to process.
16 May 2025 09:25:55,397 INFO : Finished importing Sample Status Data
16 May 2025 09:25:55,400 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
16 May 2025 09:25:55,402 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
16 May 2025 09:25:55,403 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
16 May 2025 09:25:55,403 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
16 May 2025 09:25:55,403 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
16 May 2025 09:25:55,403 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
16 May 2025 09:25:55,405 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
16 May 2025 09:25:55,409 INFO : Moving files to folder /Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2 and creating symlinks
16 May 2025 09:25:55,411 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51.sky.zip to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51.sky.zip
16 May 2025 09:25:55,412 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51.sky.zip targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51.sky.zip
16 May 2025 09:25:55,414 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles
16 May 2025 09:25:55,415 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_1.raw to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_1.raw
16 May 2025 09:25:55,416 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_1.raw targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_1.raw
16 May 2025 09:25:55,417 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_2.raw to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_2.raw
16 May 2025 09:25:55,418 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_2.raw targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_2.raw
16 May 2025 09:25:55,419 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_3.raw to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_3.raw
16 May 2025 09:25:55,419 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_3.raw targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_3.raw
16 May 2025 09:25:55,420 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_OA_2.raw to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_OA_2.raw
16 May 2025 09:25:55,421 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_OA_2.raw targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_OA_2.raw
16 May 2025 09:25:55,422 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_OA_2.raw to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_OA_2.raw
16 May 2025 09:25:55,423 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_OA_2.raw targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_OA_2.raw
16 May 2025 09:25:55,424 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_OA_3.raw to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_OA_3.raw
16 May 2025 09:25:55,424 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_OA_3.raw targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_OA_3.raw
16 May 2025 09:25:55,426 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_2.raw to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_2.raw
16 May 2025 09:25:55,426 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_2.raw targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_2.raw
16 May 2025 09:25:55,427 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_OA_3.raw to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_OA_3.raw
16 May 2025 09:25:55,428 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_OA_3.raw targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_OA_3.raw
16 May 2025 09:25:55,429 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_OA_1.raw to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_OA_1.raw
16 May 2025 09:25:55,430 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_OA_1.raw targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_OA_1.raw
16 May 2025 09:25:55,431 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_OA_1.raw to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_OA_1.raw
16 May 2025 09:25:55,432 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_OA_1.raw targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_OA_1.raw
16 May 2025 09:25:55,433 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_3.raw to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_3.raw
16 May 2025 09:25:55,434 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_3.raw targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_HBSS_3.raw
16 May 2025 09:25:55,436 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_1.raw to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_1.raw
16 May 2025 09:25:55,437 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_1.raw targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/RawFiles/20240822_MB_AS_PRM_DMEM_1.raw
16 May 2025 09:25:55,440 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/assaydata
16 May 2025 09:25:55,441 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51
16 May 2025 09:25:55,441 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.skyd to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.skyd
16 May 2025 09:25:55,442 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.skyd targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.skyd
16 May 2025 09:25:55,443 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.skyl to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.skyl
16 May 2025 09:25:55,443 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.skyl targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.skyl
16 May 2025 09:25:55,445 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.sky.view to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.sky.view
16 May 2025 09:25:55,445 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.sky.view targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.sky.view
16 May 2025 09:25:55,447 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.sky to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.sky
16 May 2025 09:25:55,447 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.sky targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.sky
16 May 2025 09:25:55,449 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/UNIPROT_Human_Jan_2022.protdb to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/UNIPROT_Human_Jan_2022.protdb
16 May 2025 09:25:55,450 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/UNIPROT_Human_Jan_2022.protdb targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/UNIPROT_Human_Jan_2022.protdb
16 May 2025 09:25:55,450 DEBUG: Moved file /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_AM_PRM-assay.blib to /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_AM_PRM-assay.blib
16 May 2025 09:25:55,451 DEBUG: Created symlink /data/labkey/files/UNIFR - Dengjel lab/OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_AM_PRM-assay.blib targeting /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_AM_PRM-assay.blib
16 May 2025 09:25:55,452 INFO : Aligning data files urls in folder: /Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2
16 May 2025 09:25:55,453 DEBUG: Setting filePathRoot on copied run: 20240709_OBIPhA.sky.zip to: /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files
16 May 2025 09:25:55,455 DEBUG: Setting dataFileUri on copied data: 20240709_as_prm_forupload_onelibrary.skyd to: /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51/20240709_as_prm_forupload_onelibrary.skyd
16 May 2025 09:25:55,456 DEBUG: Setting dataFileUri on copied data: 20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51.sky.zip to: /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/20240709_as_prm_forupload_onelibrary_2025-05-16_08-55-51.sky.zip
16 May 2025 09:25:55,456 INFO : Updating skydDataIds in folder: /Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2
16 May 2025 09:25:55,458 INFO : Importing files metadata.
16 May 2025 09:25:55,458 DEBUG: [/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2] Reading files metadata from /data/labkey/files/Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2/@files/export
16 May 2025 09:25:55,459 INFO :
16 May 2025 09:25:55,459 INFO : Experiment import completed successfully.
16 May 2025 09:25:55,459 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
16 May 2025 09:25:55,487 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
16 May 2025 09:25:55,487 INFO :
16 May 2025 09:25:55,487 INFO : Checking for library folders.
16 May 2025 09:25:55,488 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
16 May 2025 09:25:55,507 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
16 May 2025 09:25:55,508 INFO :
16 May 2025 09:25:55,508 INFO : Finishing up experiment copy.
16 May 2025 09:25:55,509 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2025/UNIFR Dengjel lab - OBIPhA - PP2
16 May 2025 09:25:55,509 INFO : Setting version on new experiment to 1
16 May 2025 09:25:55,511 INFO : Updating permanent link to point to the new copy of the data.
16 May 2025 09:25:55,535 INFO : Removing copy permissions given to Panorama Public
16 May 2025 09:25:55,538 INFO : Adding read permissions to all users that are folder admins in the source folder.
16 May 2025 09:25:55,538 INFO : Assigning ReaderRole to joern.dengjel@unifr.ch
16 May 2025 09:25:55,538 INFO : Assigning ReaderRole to melanie.brunner@unifr.ch
16 May 2025 09:25:55,538 INFO : Assigning ReaderRole to alexandre.leytens@unifr.ch
16 May 2025 09:25:55,538 INFO : Assigning PanoramaPublicSubmitterRole to joern.dengjel@unifr.ch
16 May 2025 09:25:55,538 INFO : Assigning PanoramaPublicSubmitterRole to melanie.brunner@unifr.ch
16 May 2025 09:25:55,542 INFO : Adding user joern.dengjel@unifr.ch to group Panorama Public Submitters
16 May 2025 09:25:55,545 INFO : Adding user melanie.brunner@unifr.ch to group Panorama Public Submitters
16 May 2025 09:25:55,549 INFO : Updating the 'Raw Data' tab configuration
16 May 2025 09:25:55,549 INFO : Making folder public.
16 May 2025 09:25:55,551 INFO : Hiding the Data Pipeline tab.
16 May 2025 09:25:55,554 INFO : Updating Submission. Setting copiedExperimentId to 2065
16 May 2025 09:25:56,986 INFO : Assigning a ProteomeXchange ID.
16 May 2025 09:25:57,941 INFO : Assigned ProteomeXchange ID: PXD064018
16 May 2025 09:25:57,941 INFO : Assigning a DOI.
16 May 2025 09:25:58,669 INFO : Assigned DOI: 10.6069/w2pn-nk17
16 May 2025 09:25:58,699 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'