17 Feb 2025 21:22:34,987 INFO : Copying experiment "Cas13d-mediated isoform-specific RNA knockdown with a unified computational and experimental toolbox" from folder /U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2 to /Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2
17 Feb 2025 21:22:34,987 INFO : =======================================
17 Feb 2025 21:22:34,999 DEBUG: Resetting Job ID: 1d32be41-cfe6-103d-beb7-1cc91aa94700
17 Feb 2025 21:22:35,020 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
17 Feb 2025 21:22:35,020 INFO : 
17 Feb 2025 21:22:35,020 INFO : Exporting experiment.
17 Feb 2025 21:22:40,168 INFO : Exporting files metadata.
17 Feb 2025 21:22:40,169 DEBUG: [/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2]  Writing files metadata to /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/export
17 Feb 2025 21:22:40,175 INFO : 
17 Feb 2025 21:22:40,175 INFO : Experiment export completed successfully.
17 Feb 2025 21:22:40,175 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
17 Feb 2025 21:22:40,193 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
17 Feb 2025 21:22:40,193 INFO : 
17 Feb 2025 21:22:40,193 INFO : Importing experiment.
17 Feb 2025 21:22:40,195 DEBUG: [/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2] Importing folder properties from: /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/export
17 Feb 2025 21:22:40,196 INFO : Loading folder properties (folder type, settings and active modules)
17 Feb 2025 21:22:40,196 DEBUG: [/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2] Folder type: Targeted MS
17 Feb 2025 21:22:40,196 DEBUG: [/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2] Active modules: Issues, Experiment, Protein, Search, PanoramaPublic, Pipeline, Announcements, Query, FileContent, Core, Wiki, TargetedMS, API
17 Feb 2025 21:22:40,225 INFO : Done importing folder properties (folder type, settings and active modules)
17 Feb 2025 21:22:40,226 INFO : Loading container specific module properties
17 Feb 2025 21:22:40,231 INFO : Done importing container specific module properties
17 Feb 2025 21:22:40,232 INFO : Loading queries
17 Feb 2025 21:22:40,235 INFO : 1 query imported
17 Feb 2025 21:22:40,235 INFO : Done importing queries
17 Feb 2025 21:22:40,235 INFO : Loading etl definitions
17 Feb 2025 21:22:40,236 INFO : Loading wikis
17 Feb 2025 21:22:40,238 INFO : 0 wikis imported
17 Feb 2025 21:22:40,238 INFO : Done importing wikis
17 Feb 2025 21:22:40,239 INFO : Starting Data Class Importer
17 Feb 2025 21:22:40,239 INFO : No types XAR file to process.
17 Feb 2025 21:22:40,239 INFO : Finished Data Class Importer
17 Feb 2025 21:22:40,239 INFO : Starting to copy files to @files
17 Feb 2025 21:22:40,239 INFO : Copied 0 files to @files
17 Feb 2025 21:22:40,240 INFO : Starting to copy files to @assayfiles
17 Feb 2025 21:22:40,240 INFO : Copied 0 files to @assayfiles
17 Feb 2025 21:22:40,240 INFO : Ensuring exp.data rows exist for imported files
17 Feb 2025 21:22:40,291 INFO : Starting Sample Type Importer
17 Feb 2025 21:22:40,291 INFO : No types XAR file to process.
17 Feb 2025 21:22:40,291 INFO : Finished Sample Type Importer
17 Feb 2025 21:22:40,292 INFO : Loading xar
17 Feb 2025 21:22:42,659 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14638:TargetedMS.ImportSkyZip'
17 Feb 2025 21:22:42,661 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14638:TargetedMS.ImportSkyZip.Core'
17 Feb 2025 21:22:42,662 DEBUG: Finished loading Protocol with LSID 'urn:lsid:uw.edu:Protocol.Folder-14638:TargetedMS.ImportSkyZip.Output'
17 Feb 2025 21:22:42,662 DEBUG: Protocol import complete
17 Feb 2025 21:22:42,662 DEBUG: Finished loading Experiment with LSID 'urn:lsid:uw.edu:Experiment.Folder-14638:Cas13d-mediated+isoform-specific+RNA+knockdown+with+a+unified+computational+and+experimental+toolbox'
17 Feb 2025 21:22:42,662 DEBUG: Experiment/Run group import complete
17 Feb 2025 21:22:42,668 DEBUG: Protocol action set import complete
17 Feb 2025 21:22:42,673 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14638:TargetedMS.ImportSkyZip'
17 Feb 2025 21:22:42,678 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:skyd.Folder-14638:beca2db0-baf7-103d-b1ba-8d1d6db2ce32'
17 Feb 2025 21:22:42,680 DEBUG: Finished loading Data with LSID 'urn:lsid:uw.edu:UploadedFile.Folder-14638:beca2d66-baf7-103d-b1ba-8d1d6db2ce32'
17 Feb 2025 21:22:42,680 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14638:TargetedMS.ImportSkyZip.Core'
17 Feb 2025 21:22:42,681 DEBUG: Finished loading ProtocolApplication with LSID 'urn:lsid:uw.edu:Protocol.Folder-14638:TargetedMS.ImportSkyZip.Output'
17 Feb 2025 21:22:42,682 DEBUG: Finished loading ExperimentRun with LSID 'urn:lsid:uw.edu:Run.Folder-14638:beca2e80-baf7-103d-b1ba-8d1d6db2ce32'
17 Feb 2025 21:22:42,685 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2025/U%20of%20Virginia%20Sheynkman%20Lab%20-%20SchertzerKnowlesRBFOX2/@files/export/xar/experiments_and_runs.xar.exploded/Run244344/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.skyd into the system
17 Feb 2025 21:22:42,685 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2025/U%20of%20Virginia%20Sheynkman%20Lab%20-%20SchertzerKnowlesRBFOX2/@files/export/xar/experiments_and_runs.xar.exploded/Run244344/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.skyd into the system
17 Feb 2025 21:22:42,685 DEBUG: Trying to load data file file:///data/labkey/files/Panorama%20Public/2025/U%20of%20Virginia%20Sheynkman%20Lab%20-%20SchertzerKnowlesRBFOX2/@files/export/xar/experiments_and_runs.xar.exploded/Run244344/RBFOX2_targets_supp_figure_2025-01-22_09-04-38.sky.zip into the system
17 Feb 2025 21:22:42,686 INFO : Starting import from RBFOX2_targets_supp_figure_2025-01-22_09-04-38.sky.zip
17 Feb 2025 21:22:42,688 INFO : Starting to import Skyline document from RBFOX2_targets_supp_figure_2025-01-22_09-04-38.sky.zip
17 Feb 2025 21:22:42,688 INFO : Expanding RBFOX2.blib
17 Feb 2025 21:22:42,689 INFO : Expanding RBFOX2_targets_supp_figure.skyd
17 Feb 2025 21:22:44,007 INFO : Expanding RBFOX2_targets_supp_figure.sky.view
17 Feb 2025 21:22:44,007 INFO : Expanding RBFOX2_targets_supp_figure.sky
17 Feb 2025 21:22:44,008 INFO : Expanding RBFOX2_targets_supp_figure.skyl
17 Feb 2025 21:22:44,011 INFO : Reading Skyline file, RBFOX2_targets_supp_figure.sky, to determine if the TransitionChromInfos in the document should be stored...
17 Feb 2025 21:22:44,012 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
17 Feb 2025 21:22:44,013 WARN : The version of this Skyline document is 24.1. This is newer than the highest supported version 23.1
17 Feb 2025 21:22:44,014 INFO : 8% Done
17 Feb 2025 21:22:44,015 DEBUG: Starting to load chromatogram headers
17 Feb 2025 21:22:44,016 DEBUG: Done loading chromatogram headers
17 Feb 2025 21:22:44,142 INFO : Inserting peptides1
17 Feb 2025 21:22:44,163 INFO : 67% Done
17 Feb 2025 21:22:44,195 INFO : 98% Done
17 Feb 2025 21:22:44,208 DEBUG: Total peptides inserted: 2
17 Feb 2025 21:22:44,208 INFO : Done parsing Skyline document.
17 Feb 2025 21:22:44,257 INFO : Creating and populating temp tables for Proportion values
17 Feb 2025 21:22:44,261 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
17 Feb 2025 21:22:44,262 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
17 Feb 2025 21:22:44,263 INFO : Cleaning up temp tables
17 Feb 2025 21:22:44,519 INFO : Completed import of Skyline document from RBFOX2_targets_supp_figure_2025-01-22_09-04-38.sky.zip
17 Feb 2025 21:22:44,521 INFO : 100% Done
17 Feb 2025 21:22:44,525 DEBUG: Finished trying to load data file file:///data/labkey/files/Panorama%20Public/2025/U%20of%20Virginia%20Sheynkman%20Lab%20-%20SchertzerKnowlesRBFOX2/@files/export/xar/experiments_and_runs.xar.exploded/Run244344/RBFOX2_targets_supp_figure_2025-01-22_09-04-38.sky.zip into the system
17 Feb 2025 21:22:44,758 INFO : Done importing xar
17 Feb 2025 21:22:44,759 INFO : Loading pages and webpart properties
17 Feb 2025 21:22:44,802 INFO : Done importing 3 page(s) with 5 webpart(s)
17 Feb 2025 21:22:44,802 INFO : Loading File Browser config
17 Feb 2025 21:22:44,802 INFO : Done importing File Browser config
17 Feb 2025 21:22:44,803 INFO : Starting Sample Status Data import
17 Feb 2025 21:22:44,803 INFO : No sample types XAR file to process.
17 Feb 2025 21:22:44,803 INFO : Finished importing Sample Status Data
17 Feb 2025 21:22:44,807 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
17 Feb 2025 21:22:44,809 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
17 Feb 2025 21:22:44,809 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
17 Feb 2025 21:22:44,810 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
17 Feb 2025 21:22:44,810 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
17 Feb 2025 21:22:44,811 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
17 Feb 2025 21:22:44,812 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
17 Feb 2025 21:22:44,816 INFO : Moving files to folder /Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2 and creating symlinks
17 Feb 2025 21:22:44,817 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38
17 Feb 2025 21:22:44,818 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.skyl to /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.skyl
17 Feb 2025 21:22:44,821 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.skyl targeting /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.skyl
17 Feb 2025 21:22:44,822 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2.blib to /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2.blib
17 Feb 2025 21:22:44,823 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2.blib targeting /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2.blib
17 Feb 2025 21:22:44,824 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.sky.view to /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.sky.view
17 Feb 2025 21:22:44,825 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.sky.view targeting /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.sky.view
17 Feb 2025 21:22:44,826 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.sky to /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.sky
17 Feb 2025 21:22:44,826 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.sky targeting /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.sky
17 Feb 2025 21:22:44,827 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.skyd to /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.skyd
17 Feb 2025 21:22:44,828 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.skyd targeting /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.skyd
17 Feb 2025 21:22:44,829 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38.sky.zip to /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38.sky.zip
17 Feb 2025 21:22:44,829 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38.sky.zip targeting /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38.sky.zip
17 Feb 2025 21:22:44,830 DEBUG: Directory created: /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles
17 Feb 2025 21:22:44,831 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G3_tryp_PRMrnd2_2hr2.raw to /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G3_tryp_PRMrnd2_2hr2.raw
17 Feb 2025 21:22:44,831 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G3_tryp_PRMrnd2_2hr2.raw targeting /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G3_tryp_PRMrnd2_2hr2.raw
17 Feb 2025 21:22:44,832 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_cntrl_tryp_PRMrnd2_2hr.raw to /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_cntrl_tryp_PRMrnd2_2hr.raw
17 Feb 2025 21:22:44,833 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_cntrl_tryp_PRMrnd2_2hr.raw targeting /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_cntrl_tryp_PRMrnd2_2hr.raw
17 Feb 2025 21:22:44,834 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G5_tryp_PRMrnd2_2hr2.raw to /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G5_tryp_PRMrnd2_2hr2.raw
17 Feb 2025 21:22:44,834 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G5_tryp_PRMrnd2_2hr2.raw targeting /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G5_tryp_PRMrnd2_2hr2.raw
17 Feb 2025 21:22:44,835 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G3_tryp_PRMrnd2_2hr3.raw to /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G3_tryp_PRMrnd2_2hr3.raw
17 Feb 2025 21:22:44,836 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G3_tryp_PRMrnd2_2hr3.raw targeting /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G3_tryp_PRMrnd2_2hr3.raw
17 Feb 2025 21:22:44,836 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/Schertzer_RBFOX2_MStargets_Jan2025.zip to /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/Schertzer_RBFOX2_MStargets_Jan2025.zip
17 Feb 2025 21:22:44,837 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/Schertzer_RBFOX2_MStargets_Jan2025.zip targeting /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/Schertzer_RBFOX2_MStargets_Jan2025.zip
17 Feb 2025 21:22:44,838 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G5_tryp_PRMrnd2_2hr3.raw to /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G5_tryp_PRMrnd2_2hr3.raw
17 Feb 2025 21:22:44,838 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G5_tryp_PRMrnd2_2hr3.raw targeting /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G5_tryp_PRMrnd2_2hr3.raw
17 Feb 2025 21:22:44,839 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G5_tryp_PRMrnd2_2hr.raw to /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G5_tryp_PRMrnd2_2hr.raw
17 Feb 2025 21:22:44,840 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G5_tryp_PRMrnd2_2hr.raw targeting /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G5_tryp_PRMrnd2_2hr.raw
17 Feb 2025 21:22:44,840 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_cntrl_tryp_PRMrnd2_2hr3.raw to /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_cntrl_tryp_PRMrnd2_2hr3.raw
17 Feb 2025 21:22:44,841 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_cntrl_tryp_PRMrnd2_2hr3.raw targeting /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_cntrl_tryp_PRMrnd2_2hr3.raw
17 Feb 2025 21:22:44,842 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_cntrl_tryp_PRMrnd2_2hr2.raw to /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_cntrl_tryp_PRMrnd2_2hr2.raw
17 Feb 2025 21:22:44,842 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_cntrl_tryp_PRMrnd2_2hr2.raw targeting /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_cntrl_tryp_PRMrnd2_2hr2.raw
17 Feb 2025 21:22:44,843 DEBUG: Moved file /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G3_tryp_PRMrnd2_2hr.raw to /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G3_tryp_PRMrnd2_2hr.raw
17 Feb 2025 21:22:44,844 DEBUG: Created symlink /data/labkey/files/U of Virginia - Sheynkman Lab/SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G3_tryp_PRMrnd2_2hr.raw targeting /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RawFiles/241209_AuroraTS_KD_G3_tryp_PRMrnd2_2hr.raw
17 Feb 2025 21:22:44,844 INFO : Aligning data files urls in folder: /Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2
17 Feb 2025 21:22:44,846 DEBUG: Setting filePathRoot on copied run: RBFOX2_targets_supp_figure_2025-01-22_09-04-38.sky.zip to: /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files
17 Feb 2025 21:22:44,848 DEBUG: Setting dataFileUri on copied data: RBFOX2_targets_supp_figure.skyd to: /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38/RBFOX2_targets_supp_figure.skyd
17 Feb 2025 21:22:44,849 DEBUG: Setting dataFileUri on copied data: RBFOX2_targets_supp_figure_2025-01-22_09-04-38.sky.zip to: /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/RBFOX2_targets_supp_figure_2025-01-22_09-04-38.sky.zip
17 Feb 2025 21:22:44,850 INFO : Importing files metadata.
17 Feb 2025 21:22:44,850 DEBUG: [/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2]  Reading files metadata from /data/labkey/files/Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2/@files/export
17 Feb 2025 21:22:44,851 INFO : 
17 Feb 2025 21:22:44,851 INFO : Experiment import completed successfully.
17 Feb 2025 21:22:44,851 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
17 Feb 2025 21:22:44,870 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
17 Feb 2025 21:22:44,870 INFO : 
17 Feb 2025 21:22:44,870 INFO : Checking for library folders.
17 Feb 2025 21:22:44,872 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
17 Feb 2025 21:22:44,886 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
17 Feb 2025 21:22:44,886 INFO : 
17 Feb 2025 21:22:44,886 INFO : Finishing up experiment copy.
17 Feb 2025 21:22:44,887 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2025/U of Virginia Sheynkman Lab - SchertzerKnowlesRBFOX2
17 Feb 2025 21:22:44,888 INFO : Setting version on new experiment to 1
17 Feb 2025 21:22:44,889 INFO : Updating permanent link to point to the new copy of the data.
17 Feb 2025 21:22:44,905 INFO : Removing copy permissions given to Panorama Public
17 Feb 2025 21:22:44,906 INFO : Adding read permissions to all users that are folder admins in the source folder.
17 Feb 2025 21:22:44,907 INFO : Assigning ReaderRole to edf4n@virginia.edu
17 Feb 2025 21:22:44,907 INFO : Assigning PanoramaPublicSubmitterRole to edf4n@virginia.edu
17 Feb 2025 21:22:44,912 INFO : User edf4n@virginia.edu is already a member of group Panorama Public Submitters
17 Feb 2025 21:22:44,912 INFO : Updating the 'Raw Data' tab configuration
17 Feb 2025 21:22:44,913 INFO : Creating a reviewer account.
17 Feb 2025 21:22:44,957 INFO : Created reviewer with email: panorama+reviewer327@proteinms.net
17 Feb 2025 21:22:44,957 INFO : Generating password.
17 Feb 2025 21:22:45,094 INFO : Set reviewer password successfully.
17 Feb 2025 21:22:45,100 INFO : Adding user panorama+reviewer327@proteinms.net to group Reviewers
17 Feb 2025 21:22:45,101 INFO : Hiding the Data Pipeline tab.
17 Feb 2025 21:22:45,104 INFO : Updating Submission. Setting copiedExperimentId to 2014
17 Feb 2025 21:22:46,407 INFO : Assigning a ProteomeXchange ID.
17 Feb 2025 21:22:47,497 INFO : Assigned ProteomeXchange ID: PXD060902
17 Feb 2025 21:22:47,497 INFO : Assigning a DOI.
17 Feb 2025 21:22:48,165 INFO : Assigned DOI: 10.6069/qqpx-z223
17 Feb 2025 21:22:48,239 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'