Copying experiment: Quantitative protein analysis and glycan profiling of umbilical cord plasma and corresponding maternal plasma samples

U of Masaryk RECETOX - Benesova et al. Sci Rep 2025

Job Status

Created: 2025-09-11 14:18:16
Modified: 2025-09-11 14:19:13
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Quantitative protein analysis and glycan profiling of umbilical cord plasma and corresponding maternal plasma samples
File Path: /data/labkey/files/Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/@files/Experiment_1358.log
Files: Experiment_1358.log
Completed Runs: Proteomic analysis of 98 MP samples.sky.zip
Calibration_part 1_A1AT, A1AG, IgA.sky.zip
Calibration_part 2.sky.zip
Proteomic analysis of 98 UCP samples.sky.zip
Intra- and interday precision_part 1_ A1AT, A1AG, IgA.sky.zip
Intra- and interday precision_part 2.sky.zip
SPE_recovery_part 2.sky.zip
SPE recovery_part 1_A1AT, A1AG, IgA.sky.zip

Log File


11 Sep 2025 14:18:16,202 INFO : Copying experiment "Quantitative protein analysis and glycan profiling of umbilical cord plasma and corresponding maternal plasma samples" from folder /U of Masaryk - RECETOX/Benesova et al. Sci Rep 2025 to /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025
11 Sep 2025 14:18:16,202 INFO : =======================================
11 Sep 2025 14:18:16,231 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
11 Sep 2025 14:18:16,231 INFO :
11 Sep 2025 14:18:16,231 INFO : Exporting experiment.
11 Sep 2025 14:18:38,095 INFO : Exporting files metadata.
11 Sep 2025 14:18:38,383 INFO :
11 Sep 2025 14:18:38,383 INFO : Experiment export completed successfully.
11 Sep 2025 14:18:38,383 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
11 Sep 2025 14:18:38,399 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
11 Sep 2025 14:18:38,399 INFO :
11 Sep 2025 14:18:38,399 INFO : Importing experiment.
11 Sep 2025 14:18:38,401 INFO : Loading folder properties (folder type, settings and active modules)
11 Sep 2025 14:18:38,434 INFO : Done importing folder properties (folder type, settings and active modules)
11 Sep 2025 14:18:38,435 INFO : Loading container specific module properties
11 Sep 2025 14:18:38,440 INFO : Done importing container specific module properties
11 Sep 2025 14:18:38,441 INFO : Loading queries
11 Sep 2025 14:18:38,443 INFO : 1 query imported
11 Sep 2025 14:18:38,443 INFO : Done importing queries
11 Sep 2025 14:18:38,444 INFO : Loading grid views
11 Sep 2025 14:18:38,446 INFO : 1 custom view imported
11 Sep 2025 14:18:38,446 INFO : Done importing grid views
11 Sep 2025 14:18:38,447 INFO : Loading etl definitions
11 Sep 2025 14:18:38,448 INFO : Loading wikis
11 Sep 2025 14:18:38,448 INFO : 0 wikis imported
11 Sep 2025 14:18:38,448 INFO : Done importing wikis
11 Sep 2025 14:18:38,449 INFO : Starting Data Class Importer
11 Sep 2025 14:18:38,449 INFO : No types XAR file to process.
11 Sep 2025 14:18:38,449 INFO : Finished Data Class Importer
11 Sep 2025 14:18:38,450 INFO : Starting to copy files to @files
11 Sep 2025 14:18:38,450 INFO : Copied 0 files to @files
11 Sep 2025 14:18:38,450 INFO : Starting to copy files to @assayfiles
11 Sep 2025 14:18:38,450 INFO : Copied 0 files to @assayfiles
11 Sep 2025 14:18:38,450 INFO : Ensuring exp.data rows exist for imported files
11 Sep 2025 14:18:38,679 INFO : Starting Sample Type Importer
11 Sep 2025 14:18:38,679 INFO : No types XAR file to process.
11 Sep 2025 14:18:38,679 INFO : Finished Sample Type Importer
11 Sep 2025 14:18:38,680 INFO : Loading xar
11 Sep 2025 14:18:38,695 INFO : Done importing xar
11 Sep 2025 14:18:38,696 INFO : Loading pages and webpart properties
11 Sep 2025 14:18:38,741 INFO : Done importing 3 page(s) with 5 webpart(s)
11 Sep 2025 14:18:38,741 INFO : Loading File Browser config
11 Sep 2025 14:18:38,741 INFO : Done importing File Browser config
11 Sep 2025 14:18:38,742 INFO : Starting Sample Status Data import
11 Sep 2025 14:18:38,742 INFO : No sample types XAR file to process.
11 Sep 2025 14:18:38,742 INFO : Finished importing Sample Status Data
11 Sep 2025 14:18:38,746 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
11 Sep 2025 14:18:38,748 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
11 Sep 2025 14:18:38,748 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
11 Sep 2025 14:18:38,748 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
11 Sep 2025 14:18:38,748 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
11 Sep 2025 14:18:38,748 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
11 Sep 2025 14:18:38,749 INFO : Loading subfolders and container tabs
11 Sep 2025 14:18:38,767 INFO : New folder created with inherited permissions: /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/Calibration Part 1
11 Sep 2025 14:18:38,767 INFO : Loading folder archive for Calibration Part 1
11 Sep 2025 14:18:38,768 INFO : Loading folder properties (folder type, settings and active modules)
11 Sep 2025 14:18:38,796 INFO : Done importing folder properties (folder type, settings and active modules)
11 Sep 2025 14:18:38,797 INFO : Loading container specific module properties
11 Sep 2025 14:18:38,801 INFO : Done importing container specific module properties
11 Sep 2025 14:18:38,802 INFO : Loading queries
11 Sep 2025 14:18:38,804 INFO : 1 query imported
11 Sep 2025 14:18:38,804 INFO : Done importing queries
11 Sep 2025 14:18:38,805 INFO : Loading etl definitions
11 Sep 2025 14:18:38,805 INFO : Loading wikis
11 Sep 2025 14:18:38,806 INFO : 0 wikis imported
11 Sep 2025 14:18:38,806 INFO : Done importing wikis
11 Sep 2025 14:18:38,807 INFO : Starting Data Class Importer
11 Sep 2025 14:18:38,807 INFO : No types XAR file to process.
11 Sep 2025 14:18:38,807 INFO : Finished Data Class Importer
11 Sep 2025 14:18:38,808 INFO : Starting to copy files to @files
11 Sep 2025 14:18:38,808 INFO : Copied 0 files to @files
11 Sep 2025 14:18:38,808 INFO : Starting to copy files to @assayfiles
11 Sep 2025 14:18:38,808 INFO : Copied 0 files to @assayfiles
11 Sep 2025 14:18:38,808 INFO : Ensuring exp.data rows exist for imported files
11 Sep 2025 14:18:38,811 INFO : Starting Sample Type Importer
11 Sep 2025 14:18:38,811 INFO : No types XAR file to process.
11 Sep 2025 14:18:38,811 INFO : Finished Sample Type Importer
11 Sep 2025 14:18:38,812 INFO : Loading xar
11 Sep 2025 14:18:39,353 INFO : Starting import from Calibration_part 1_A1AT, A1AG, IgA.sky.zip
11 Sep 2025 14:18:39,355 INFO : Starting to import Skyline document from Calibration_part 1_A1AT, A1AG, IgA.sky.zip
11 Sep 2025 14:18:39,356 INFO : Expanding Calibration_part 1_A1AT, A1AG, IgA.skyd
11 Sep 2025 14:18:39,668 INFO : Expanding Calibration_part 1_A1AT, A1AG, IgA.sky.view
11 Sep 2025 14:18:39,669 INFO : Expanding Calibration_part 1_A1AT, A1AG, IgA.sky
11 Sep 2025 14:18:39,672 INFO : Reading Skyline file, Calibration_part 1_A1AT, A1AG, IgA.sky, to determine if the TransitionChromInfos in the document should be stored...
11 Sep 2025 14:18:39,677 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
11 Sep 2025 14:18:39,678 INFO : 2% Done
11 Sep 2025 14:18:39,678 INFO : Copying SKYD to temp directory for import purposes
11 Sep 2025 14:18:39,749 INFO : Copying complete
11 Sep 2025 14:18:39,901 INFO : Inserting IgA1
11 Sep 2025 14:18:39,905 INFO : 13% Done
11 Sep 2025 14:18:39,957 INFO : Inserting IgA1+2
11 Sep 2025 14:18:39,960 INFO : 22% Done
11 Sep 2025 14:18:40,015 INFO : 30% Done
11 Sep 2025 14:18:40,065 INFO : Inserting IgA2
11 Sep 2025 14:18:40,068 INFO : 39% Done
11 Sep 2025 14:18:40,119 INFO : Inserting A1AT
11 Sep 2025 14:18:40,122 INFO : 48% Done
11 Sep 2025 14:18:40,175 INFO : 58% Done
11 Sep 2025 14:18:40,227 INFO : 67% Done
11 Sep 2025 14:18:40,278 INFO : Inserting A1AG1
11 Sep 2025 14:18:40,281 INFO : 75% Done
11 Sep 2025 14:18:40,334 INFO : 84% Done
11 Sep 2025 14:18:40,384 INFO : Inserting A1AG2
11 Sep 2025 14:18:40,387 INFO : 91% Done
11 Sep 2025 14:18:40,429 INFO : 98% Done
11 Sep 2025 14:18:40,470 INFO : Done parsing Skyline document.
11 Sep 2025 14:18:40,471 INFO : Creating and populating temp tables for Proportion values
11 Sep 2025 14:18:40,476 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Sep 2025 14:18:40,503 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Sep 2025 14:18:40,513 INFO : Cleaning up temp tables
11 Sep 2025 14:18:40,771 INFO : Deleted temp copy of SKYD file
11 Sep 2025 14:18:40,771 INFO : Completed import of Skyline document from Calibration_part 1_A1AT, A1AG, IgA.sky.zip
11 Sep 2025 14:18:40,773 INFO : 100% Done
11 Sep 2025 14:18:40,988 INFO : Done importing xar
11 Sep 2025 14:18:40,989 INFO : Loading pages and webpart properties
11 Sep 2025 14:18:41,035 INFO : Done importing 3 page(s) with 4 webpart(s)
11 Sep 2025 14:18:41,035 INFO : Loading File Browser config
11 Sep 2025 14:18:41,035 INFO : Done importing File Browser config
11 Sep 2025 14:18:41,036 INFO : Starting Sample Status Data import
11 Sep 2025 14:18:41,036 INFO : No sample types XAR file to process.
11 Sep 2025 14:18:41,036 INFO : Finished importing Sample Status Data
11 Sep 2025 14:18:41,039 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
11 Sep 2025 14:18:41,041 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
11 Sep 2025 14:18:41,041 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
11 Sep 2025 14:18:41,041 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
11 Sep 2025 14:18:41,041 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
11 Sep 2025 14:18:41,041 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
11 Sep 2025 14:18:41,043 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
11 Sep 2025 14:18:41,046 INFO : Adding runs imported in subfolders.
11 Sep 2025 14:18:41,051 INFO : Moving files to folder /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/Calibration Part 1 and creating symlinks
11 Sep 2025 14:18:41,141 INFO : Aligning data files urls in folder: /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/Calibration Part 1
11 Sep 2025 14:18:41,145 INFO : Updating skydDataIds in folder: /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/Calibration Part 1
11 Sep 2025 14:18:41,147 INFO : Done importing folder archive for Calibration Part 1
11 Sep 2025 14:18:41,164 INFO : New folder created with inherited permissions: /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/Calibration Part 2
11 Sep 2025 14:18:41,164 INFO : Loading folder archive for Calibration Part 2
11 Sep 2025 14:18:41,165 INFO : Loading folder properties (folder type, settings and active modules)
11 Sep 2025 14:18:41,193 INFO : Done importing folder properties (folder type, settings and active modules)
11 Sep 2025 14:18:41,194 INFO : Loading container specific module properties
11 Sep 2025 14:18:41,198 INFO : Done importing container specific module properties
11 Sep 2025 14:18:41,199 INFO : Loading queries
11 Sep 2025 14:18:41,201 INFO : 1 query imported
11 Sep 2025 14:18:41,201 INFO : Done importing queries
11 Sep 2025 14:18:41,202 INFO : Loading etl definitions
11 Sep 2025 14:18:41,203 INFO : Loading wikis
11 Sep 2025 14:18:41,203 INFO : 0 wikis imported
11 Sep 2025 14:18:41,203 INFO : Done importing wikis
11 Sep 2025 14:18:41,204 INFO : Starting Data Class Importer
11 Sep 2025 14:18:41,204 INFO : No types XAR file to process.
11 Sep 2025 14:18:41,204 INFO : Finished Data Class Importer
11 Sep 2025 14:18:41,205 INFO : Starting to copy files to @files
11 Sep 2025 14:18:41,205 INFO : Copied 0 files to @files
11 Sep 2025 14:18:41,205 INFO : Starting to copy files to @assayfiles
11 Sep 2025 14:18:41,205 INFO : Copied 0 files to @assayfiles
11 Sep 2025 14:18:41,205 INFO : Ensuring exp.data rows exist for imported files
11 Sep 2025 14:18:41,208 INFO : Starting Sample Type Importer
11 Sep 2025 14:18:41,208 INFO : No types XAR file to process.
11 Sep 2025 14:18:41,208 INFO : Finished Sample Type Importer
11 Sep 2025 14:18:41,209 INFO : Loading xar
11 Sep 2025 14:18:41,716 INFO : Starting import from Calibration_part 2.sky.zip
11 Sep 2025 14:18:41,718 INFO : Starting to import Skyline document from Calibration_part 2.sky.zip
11 Sep 2025 14:18:41,718 INFO : Expanding Calibration_part 2.skyd
11 Sep 2025 14:18:41,993 INFO : Expanding Calibration_part 2.sky.view
11 Sep 2025 14:18:41,994 INFO : Expanding Calibration_part 2.sky
11 Sep 2025 14:18:42,001 INFO : Reading Skyline file, Calibration_part 2.sky, to determine if the TransitionChromInfos in the document should be stored...
11 Sep 2025 14:18:42,011 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
11 Sep 2025 14:18:42,013 INFO : 1% Done
11 Sep 2025 14:18:42,013 INFO : Copying SKYD to temp directory for import purposes
11 Sep 2025 14:18:42,085 INFO : Copying complete
11 Sep 2025 14:18:42,238 INFO : Inserting transferrin
11 Sep 2025 14:18:42,240 INFO : 4% Done
11 Sep 2025 14:18:42,260 INFO : 6% Done
11 Sep 2025 14:18:42,278 INFO : 8% Done
11 Sep 2025 14:18:42,296 INFO : 10% Done
11 Sep 2025 14:18:42,312 INFO : Inserting haptoglobin
11 Sep 2025 14:18:42,314 INFO : 12% Done
11 Sep 2025 14:18:42,333 INFO : 14% Done
11 Sep 2025 14:18:42,350 INFO : Inserting hemopexin
11 Sep 2025 14:18:42,353 INFO : 18% Done
11 Sep 2025 14:18:42,404 INFO : 22% Done
11 Sep 2025 14:18:42,451 INFO : Inserting IgG1
11 Sep 2025 14:18:42,453 INFO : 24% Done
11 Sep 2025 14:18:42,471 INFO : 25% Done
11 Sep 2025 14:18:42,488 INFO : Inserting IgG1+2+3+4
11 Sep 2025 14:18:42,490 INFO : 27% Done
11 Sep 2025 14:18:42,503 INFO : Inserting IgG2
11 Sep 2025 14:18:42,505 INFO : 29% Done
11 Sep 2025 14:18:42,522 INFO : Inserting IgG3
11 Sep 2025 14:18:42,524 INFO : 31% Done
11 Sep 2025 14:18:42,540 INFO : Inserting IgG4
11 Sep 2025 14:18:42,542 INFO : 33% Done
11 Sep 2025 14:18:42,559 INFO : Inserting fibrinogen alpha
11 Sep 2025 14:18:42,561 INFO : 35% Done
11 Sep 2025 14:18:42,579 INFO : 39% Done
11 Sep 2025 14:18:42,614 INFO : Inserting fibrinogen beta
11 Sep 2025 14:18:42,616 INFO : 41% Done
11 Sep 2025 14:18:42,634 INFO : 42% Done
11 Sep 2025 14:18:42,648 INFO : Inserting fibrinogen gamma
11 Sep 2025 14:18:42,650 INFO : 44% Done
11 Sep 2025 14:18:42,668 INFO : 46% Done
11 Sep 2025 14:18:42,686 INFO : Inserting IgM
11 Sep 2025 14:18:42,688 INFO : 48% Done
11 Sep 2025 14:18:42,706 INFO : 51% Done
11 Sep 2025 14:18:42,723 INFO : Inserting vitronectin
11 Sep 2025 14:18:42,725 INFO : 54% Done
11 Sep 2025 14:18:42,768 INFO : 56% Done
11 Sep 2025 14:18:42,785 INFO : Inserting alpha-2-macroglobulin
11 Sep 2025 14:18:42,787 INFO : 58% Done
11 Sep 2025 14:18:42,806 INFO : 60% Done
11 Sep 2025 14:18:42,823 INFO : Inserting alpha-1B-glycoprotein
11 Sep 2025 14:18:42,824 INFO : 63% Done
11 Sep 2025 14:18:42,842 INFO : 65% Done
11 Sep 2025 14:18:42,861 INFO : 66% Done
11 Sep 2025 14:18:42,875 INFO : Inserting alpha-2-HS-glycoprotein
11 Sep 2025 14:18:42,877 INFO : 68% Done
11 Sep 2025 14:18:42,895 INFO : 71% Done
11 Sep 2025 14:18:42,913 INFO : 73% Done
11 Sep 2025 14:18:42,930 INFO : Inserting ceruroplasmin
11 Sep 2025 14:18:42,932 INFO : 74% Done
11 Sep 2025 14:18:42,950 INFO : 76% Done
11 Sep 2025 14:18:42,966 INFO : Inserting antithrombin-III
11 Sep 2025 14:18:42,968 INFO : 78% Done
11 Sep 2025 14:18:42,986 INFO : 80% Done
11 Sep 2025 14:18:43,004 INFO : 82% Done
11 Sep 2025 14:18:43,018 INFO : Inserting ApoB
11 Sep 2025 14:18:43,020 INFO : 84% Done
11 Sep 2025 14:18:43,038 INFO : 86% Done
11 Sep 2025 14:18:43,055 INFO : Inserting ApoD
11 Sep 2025 14:18:43,057 INFO : 87% Done
11 Sep 2025 14:18:43,072 INFO : 89% Done
11 Sep 2025 14:18:43,086 INFO : Inserting ApoF
11 Sep 2025 14:18:43,088 INFO : 91% Done
11 Sep 2025 14:18:43,106 INFO : 93% Done
11 Sep 2025 14:18:43,119 INFO : Inserting ApoH
11 Sep 2025 14:18:43,121 INFO : 95% Done
11 Sep 2025 14:18:43,140 INFO : 98% Done
11 Sep 2025 14:18:43,165 INFO : Done parsing Skyline document.
11 Sep 2025 14:18:43,166 INFO : Creating and populating temp tables for Proportion values
11 Sep 2025 14:18:43,173 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Sep 2025 14:18:43,232 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Sep 2025 14:18:43,271 INFO : Cleaning up temp tables
11 Sep 2025 14:18:43,295 INFO : Deleted temp copy of SKYD file
11 Sep 2025 14:18:43,295 INFO : Completed import of Skyline document from Calibration_part 2.sky.zip
11 Sep 2025 14:18:43,296 INFO : 100% Done
11 Sep 2025 14:18:43,513 INFO : Done importing xar
11 Sep 2025 14:18:43,514 INFO : Loading pages and webpart properties
11 Sep 2025 14:18:43,559 INFO : Done importing 3 page(s) with 4 webpart(s)
11 Sep 2025 14:18:43,559 INFO : Loading File Browser config
11 Sep 2025 14:18:43,559 INFO : Done importing File Browser config
11 Sep 2025 14:18:43,560 INFO : Starting Sample Status Data import
11 Sep 2025 14:18:43,560 INFO : No sample types XAR file to process.
11 Sep 2025 14:18:43,560 INFO : Finished importing Sample Status Data
11 Sep 2025 14:18:43,564 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
11 Sep 2025 14:18:43,565 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
11 Sep 2025 14:18:43,565 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
11 Sep 2025 14:18:43,566 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
11 Sep 2025 14:18:43,566 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
11 Sep 2025 14:18:43,566 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
11 Sep 2025 14:18:43,567 INFO : Moving files to folder /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/Calibration Part 2 and creating symlinks
11 Sep 2025 14:18:43,652 INFO : Aligning data files urls in folder: /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/Calibration Part 2
11 Sep 2025 14:18:43,657 INFO : Updating skydDataIds in folder: /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/Calibration Part 2
11 Sep 2025 14:18:43,658 INFO : Done importing folder archive for Calibration Part 2
11 Sep 2025 14:18:43,678 INFO : New folder created with inherited permissions: /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/Cohort samples
11 Sep 2025 14:18:43,678 INFO : Loading folder archive for Cohort samples
11 Sep 2025 14:18:43,679 INFO : Loading folder properties (folder type, settings and active modules)
11 Sep 2025 14:18:43,709 INFO : Done importing folder properties (folder type, settings and active modules)
11 Sep 2025 14:18:43,710 INFO : Loading container specific module properties
11 Sep 2025 14:18:43,715 INFO : Done importing container specific module properties
11 Sep 2025 14:18:43,716 INFO : Loading queries
11 Sep 2025 14:18:43,718 INFO : 1 query imported
11 Sep 2025 14:18:43,718 INFO : Done importing queries
11 Sep 2025 14:18:43,719 INFO : Loading etl definitions
11 Sep 2025 14:18:43,720 INFO : Loading wikis
11 Sep 2025 14:18:43,720 INFO : 0 wikis imported
11 Sep 2025 14:18:43,720 INFO : Done importing wikis
11 Sep 2025 14:18:43,721 INFO : Starting Data Class Importer
11 Sep 2025 14:18:43,721 INFO : No types XAR file to process.
11 Sep 2025 14:18:43,721 INFO : Finished Data Class Importer
11 Sep 2025 14:18:43,722 INFO : Starting to copy files to @files
11 Sep 2025 14:18:43,722 INFO : Copied 0 files to @files
11 Sep 2025 14:18:43,722 INFO : Starting to copy files to @assayfiles
11 Sep 2025 14:18:43,723 INFO : Copied 0 files to @assayfiles
11 Sep 2025 14:18:43,723 INFO : Ensuring exp.data rows exist for imported files
11 Sep 2025 14:18:43,725 INFO : Starting Sample Type Importer
11 Sep 2025 14:18:43,725 INFO : No types XAR file to process.
11 Sep 2025 14:18:43,725 INFO : Finished Sample Type Importer
11 Sep 2025 14:18:43,726 INFO : Loading xar
11 Sep 2025 14:18:46,032 INFO : Starting import from Proteomic analysis of 98 MP samples.sky.zip
11 Sep 2025 14:18:46,033 INFO : Starting to import Skyline document from Proteomic analysis of 98 MP samples.sky.zip
11 Sep 2025 14:18:46,034 INFO : Expanding Proteomic analysis of 98 cohort samples-maternal plasma.skyd
11 Sep 2025 14:18:46,730 INFO : Expanding Proteomic analysis of 98 cohort samples-maternal plasma.sky.view
11 Sep 2025 14:18:46,730 INFO : Expanding Proteomic analysis of 98 cohort samples-maternal plasma.sky
11 Sep 2025 14:18:46,764 INFO : Reading Skyline file, Proteomic analysis of 98 cohort samples-maternal plasma.sky, to determine if the TransitionChromInfos in the document should be stored...
11 Sep 2025 14:18:46,806 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
11 Sep 2025 14:18:46,808 INFO : 1% Done
11 Sep 2025 14:18:46,808 INFO : Copying SKYD to temp directory for import purposes
11 Sep 2025 14:18:46,959 INFO : Copying complete
11 Sep 2025 14:18:47,145 INFO : Inserting transferrin
11 Sep 2025 14:18:47,151 INFO : 2% Done
11 Sep 2025 14:18:47,271 INFO : 4% Done
11 Sep 2025 14:18:47,386 INFO : 6% Done
11 Sep 2025 14:18:47,501 INFO : 8% Done
11 Sep 2025 14:18:47,606 INFO : Inserting haptoglobin
11 Sep 2025 14:18:47,612 INFO : 9% Done
11 Sep 2025 14:18:47,724 INFO : 11% Done
11 Sep 2025 14:18:47,828 INFO : Inserting hemopexin
11 Sep 2025 14:18:47,833 INFO : 13% Done
11 Sep 2025 14:18:47,937 INFO : 15% Done
11 Sep 2025 14:18:48,039 INFO : Inserting IgG1
11 Sep 2025 14:18:48,043 INFO : 17% Done
11 Sep 2025 14:18:48,148 INFO : 18% Done
11 Sep 2025 14:18:48,253 INFO : Inserting IgG1+2+3+4
11 Sep 2025 14:18:48,257 INFO : 20% Done
11 Sep 2025 14:18:48,360 INFO : Inserting IgG2
11 Sep 2025 14:18:48,365 INFO : 22% Done
11 Sep 2025 14:18:48,465 INFO : Inserting IgG3
11 Sep 2025 14:18:48,470 INFO : 24% Done
11 Sep 2025 14:18:48,570 INFO : Inserting IgG4
11 Sep 2025 14:18:48,574 INFO : 25% Done
11 Sep 2025 14:18:48,678 INFO : Inserting fibrinogen alpha
11 Sep 2025 14:18:48,682 INFO : 26% Done
11 Sep 2025 14:18:48,787 INFO : 28% Done
11 Sep 2025 14:18:48,888 INFO : Inserting fibrinogen beta
11 Sep 2025 14:18:48,892 INFO : 30% Done
11 Sep 2025 14:18:48,997 INFO : 31% Done
11 Sep 2025 14:18:49,098 INFO : Inserting fibrinogen gamma
11 Sep 2025 14:18:49,102 INFO : 33% Done
11 Sep 2025 14:18:49,207 INFO : 35% Done
11 Sep 2025 14:18:49,307 INFO : Inserting IgM
11 Sep 2025 14:18:49,311 INFO : 37% Done
11 Sep 2025 14:18:49,416 INFO : 39% Done
11 Sep 2025 14:18:49,534 INFO : Inserting vitronection
11 Sep 2025 14:18:49,538 INFO : 40% Done
11 Sep 2025 14:18:49,659 INFO : 42% Done
11 Sep 2025 14:18:49,739 INFO : Inserting alpha-2-macroglobulin
11 Sep 2025 14:18:49,744 INFO : 43% Done
11 Sep 2025 14:18:49,848 INFO : 45% Done
11 Sep 2025 14:18:49,948 INFO : Inserting alpha-1B-glycoprotein
11 Sep 2025 14:18:49,952 INFO : 47% Done
11 Sep 2025 14:18:50,056 INFO : 49% Done
11 Sep 2025 14:18:50,161 INFO : 50% Done
11 Sep 2025 14:18:50,243 INFO : Inserting alpha-2-HS-glycoprotein
11 Sep 2025 14:18:50,247 INFO : 52% Done
11 Sep 2025 14:18:50,352 INFO : 54% Done
11 Sep 2025 14:18:50,456 INFO : 55% Done
11 Sep 2025 14:18:50,555 INFO : Inserting ceruroplasmin
11 Sep 2025 14:18:50,560 INFO : 57% Done
11 Sep 2025 14:18:50,664 INFO : 59% Done
11 Sep 2025 14:18:50,764 INFO : Inserting antithrombin-III
11 Sep 2025 14:18:50,769 INFO : 61% Done
11 Sep 2025 14:18:50,874 INFO : 63% Done
11 Sep 2025 14:18:50,980 INFO : 64% Done
11 Sep 2025 14:18:51,081 INFO : Inserting ApoB
11 Sep 2025 14:18:51,085 INFO : 66% Done
11 Sep 2025 14:18:51,189 INFO : 68% Done
11 Sep 2025 14:18:51,289 INFO : Inserting ApoD
11 Sep 2025 14:18:51,293 INFO : 70% Done
11 Sep 2025 14:18:51,398 INFO : 71% Done
11 Sep 2025 14:18:51,498 INFO : Inserting ApoF
11 Sep 2025 14:18:51,503 INFO : 73% Done
11 Sep 2025 14:18:51,607 INFO : 74% Done
11 Sep 2025 14:18:51,708 INFO : Inserting ApoH
11 Sep 2025 14:18:51,712 INFO : 76% Done
11 Sep 2025 14:18:51,818 INFO : 78% Done
11 Sep 2025 14:18:51,961 INFO : Inserting IgA1
11 Sep 2025 14:18:51,965 INFO : 80% Done
11 Sep 2025 14:18:52,066 INFO : Inserting IgA1+2
11 Sep 2025 14:18:52,070 INFO : 82% Done
11 Sep 2025 14:18:52,175 INFO : 84% Done
11 Sep 2025 14:18:52,277 INFO : Inserting IgA2
11 Sep 2025 14:18:52,281 INFO : 86% Done
11 Sep 2025 14:18:52,382 INFO : Inserting A1AT
11 Sep 2025 14:18:52,386 INFO : 87% Done
11 Sep 2025 14:18:52,490 INFO : 89% Done
11 Sep 2025 14:18:52,595 INFO : 91% Done
11 Sep 2025 14:18:52,731 INFO : Inserting A1AG1
11 Sep 2025 14:18:52,735 INFO : 93% Done
11 Sep 2025 14:18:52,839 INFO : 94% Done
11 Sep 2025 14:18:52,939 INFO : Inserting A1AG2
11 Sep 2025 14:18:52,944 INFO : 96% Done
11 Sep 2025 14:18:53,048 INFO : 98% Done
11 Sep 2025 14:18:53,149 INFO : Done parsing Skyline document.
11 Sep 2025 14:18:53,149 INFO : Creating and populating temp tables for Proportion values
11 Sep 2025 14:18:53,167 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Sep 2025 14:18:53,488 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Sep 2025 14:18:53,599 INFO : Cleaning up temp tables
11 Sep 2025 14:18:53,846 INFO : Deleted temp copy of SKYD file
11 Sep 2025 14:18:53,846 INFO : Completed import of Skyline document from Proteomic analysis of 98 MP samples.sky.zip
11 Sep 2025 14:18:53,848 INFO : 100% Done
11 Sep 2025 14:18:53,853 INFO : Starting import from Proteomic analysis of 98 UCP samples.sky.zip
11 Sep 2025 14:18:53,855 INFO : Starting to import Skyline document from Proteomic analysis of 98 UCP samples.sky.zip
11 Sep 2025 14:18:53,855 INFO : Expanding Proteomic analysis of 98 cohort samples-umbilical cord plasma.skyd
11 Sep 2025 14:18:54,549 INFO : Expanding Proteomic analysis of 98 cohort samples-umbilical cord plasma.sky.view
11 Sep 2025 14:18:54,550 INFO : Expanding Proteomic analysis of 98 cohort samples-umbilical cord plasma.sky
11 Sep 2025 14:18:54,584 INFO : Reading Skyline file, Proteomic analysis of 98 cohort samples-umbilical cord plasma.sky, to determine if the TransitionChromInfos in the document should be stored...
11 Sep 2025 14:18:54,713 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
11 Sep 2025 14:18:54,715 INFO : 1% Done
11 Sep 2025 14:18:54,716 INFO : Copying SKYD to temp directory for import purposes
11 Sep 2025 14:18:54,861 INFO : Copying complete
11 Sep 2025 14:18:55,078 INFO : Inserting transferrin
11 Sep 2025 14:18:55,083 INFO : 2% Done
11 Sep 2025 14:18:55,187 INFO : 4% Done
11 Sep 2025 14:18:55,293 INFO : 6% Done
11 Sep 2025 14:18:55,398 INFO : 8% Done
11 Sep 2025 14:18:55,499 INFO : Inserting haptoglobin
11 Sep 2025 14:18:55,503 INFO : 9% Done
11 Sep 2025 14:18:55,607 INFO : 11% Done
11 Sep 2025 14:18:55,708 INFO : Inserting hemopexin
11 Sep 2025 14:18:55,713 INFO : 13% Done
11 Sep 2025 14:18:55,816 INFO : 15% Done
11 Sep 2025 14:18:55,916 INFO : Inserting IgG1
11 Sep 2025 14:18:55,920 INFO : 17% Done
11 Sep 2025 14:18:56,024 INFO : 18% Done
11 Sep 2025 14:18:56,125 INFO : Inserting IgG1+2+3+4
11 Sep 2025 14:18:56,130 INFO : 20% Done
11 Sep 2025 14:18:56,230 INFO : Inserting IgG2
11 Sep 2025 14:18:56,234 INFO : 22% Done
11 Sep 2025 14:18:56,335 INFO : Inserting IgG3
11 Sep 2025 14:18:56,339 INFO : 24% Done
11 Sep 2025 14:18:56,439 INFO : Inserting IgG4
11 Sep 2025 14:18:56,444 INFO : 25% Done
11 Sep 2025 14:18:56,544 INFO : Inserting fibrinogen alpha
11 Sep 2025 14:18:56,548 INFO : 26% Done
11 Sep 2025 14:18:56,653 INFO : 28% Done
11 Sep 2025 14:18:56,753 INFO : Inserting fibrinogen beta
11 Sep 2025 14:18:56,757 INFO : 30% Done
11 Sep 2025 14:18:56,863 INFO : 32% Done
11 Sep 2025 14:18:56,964 INFO : Inserting fibrinogen gamma
11 Sep 2025 14:18:56,968 INFO : 33% Done
11 Sep 2025 14:18:57,072 INFO : 35% Done
11 Sep 2025 14:18:57,173 INFO : Inserting IgM
11 Sep 2025 14:18:57,177 INFO : 37% Done
11 Sep 2025 14:18:57,281 INFO : 39% Done
11 Sep 2025 14:18:57,382 INFO : Inserting vitronection
11 Sep 2025 14:18:57,386 INFO : 40% Done
11 Sep 2025 14:18:57,491 INFO : 42% Done
11 Sep 2025 14:18:57,577 INFO : Inserting alpha-2-macroglobulin
11 Sep 2025 14:18:57,581 INFO : 44% Done
11 Sep 2025 14:18:57,685 INFO : 46% Done
11 Sep 2025 14:18:57,784 INFO : Inserting alpha-1B-glycoprotein
11 Sep 2025 14:18:57,789 INFO : 47% Done
11 Sep 2025 14:18:57,893 INFO : 49% Done
11 Sep 2025 14:18:57,997 INFO : 50% Done
11 Sep 2025 14:18:58,078 INFO : Inserting alpha-2-HS-glycoprotein
11 Sep 2025 14:18:58,082 INFO : 52% Done
11 Sep 2025 14:18:58,187 INFO : 54% Done
11 Sep 2025 14:18:58,291 INFO : 56% Done
11 Sep 2025 14:18:58,391 INFO : Inserting ceruroplasmin
11 Sep 2025 14:18:58,396 INFO : 58% Done
11 Sep 2025 14:18:58,500 INFO : 59% Done
11 Sep 2025 14:18:58,602 INFO : Inserting antithrombin-III
11 Sep 2025 14:18:58,607 INFO : 61% Done
11 Sep 2025 14:18:58,712 INFO : 63% Done
11 Sep 2025 14:18:58,816 INFO : 65% Done
11 Sep 2025 14:18:58,917 INFO : Inserting ApoB
11 Sep 2025 14:18:58,921 INFO : 67% Done
11 Sep 2025 14:18:59,025 INFO : 68% Done
11 Sep 2025 14:18:59,125 INFO : Inserting ApoD
11 Sep 2025 14:18:59,128 INFO : 70% Done
11 Sep 2025 14:18:59,212 INFO : 71% Done
11 Sep 2025 14:18:59,313 INFO : Inserting ApoF
11 Sep 2025 14:18:59,317 INFO : 73% Done
11 Sep 2025 14:18:59,421 INFO : 74% Done
11 Sep 2025 14:18:59,522 INFO : Inserting ApoH
11 Sep 2025 14:18:59,526 INFO : 76% Done
11 Sep 2025 14:18:59,632 INFO : 78% Done
11 Sep 2025 14:18:59,774 INFO : Inserting IgA1
11 Sep 2025 14:18:59,778 INFO : 80% Done
11 Sep 2025 14:18:59,878 INFO : Inserting IgA1+2
11 Sep 2025 14:18:59,882 INFO : 82% Done
11 Sep 2025 14:18:59,986 INFO : 84% Done
11 Sep 2025 14:19:00,086 INFO : Inserting IgA2
11 Sep 2025 14:19:00,091 INFO : 86% Done
11 Sep 2025 14:19:00,191 INFO : Inserting A1AT
11 Sep 2025 14:19:00,196 INFO : 87% Done
11 Sep 2025 14:19:00,300 INFO : 89% Done
11 Sep 2025 14:19:00,406 INFO : 91% Done
11 Sep 2025 14:19:00,508 INFO : Inserting A1AG1
11 Sep 2025 14:19:00,513 INFO : 93% Done
11 Sep 2025 14:19:00,618 INFO : 94% Done
11 Sep 2025 14:19:00,719 INFO : Inserting A1AG2
11 Sep 2025 14:19:00,723 INFO : 96% Done
11 Sep 2025 14:19:00,827 INFO : 98% Done
11 Sep 2025 14:19:00,929 INFO : Done parsing Skyline document.
11 Sep 2025 14:19:00,929 INFO : Creating and populating temp tables for Proportion values
11 Sep 2025 14:19:00,947 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Sep 2025 14:19:01,263 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Sep 2025 14:19:01,373 INFO : Cleaning up temp tables
11 Sep 2025 14:19:01,416 INFO : Deleted temp copy of SKYD file
11 Sep 2025 14:19:01,417 INFO : Completed import of Skyline document from Proteomic analysis of 98 UCP samples.sky.zip
11 Sep 2025 14:19:01,420 INFO : 100% Done
11 Sep 2025 14:19:01,844 INFO : Done importing xar
11 Sep 2025 14:19:01,845 INFO : Loading pages and webpart properties
11 Sep 2025 14:19:01,891 INFO : Done importing 3 page(s) with 4 webpart(s)
11 Sep 2025 14:19:01,891 INFO : Loading File Browser config
11 Sep 2025 14:19:01,891 INFO : Done importing File Browser config
11 Sep 2025 14:19:01,892 INFO : Starting Sample Status Data import
11 Sep 2025 14:19:01,892 INFO : No sample types XAR file to process.
11 Sep 2025 14:19:01,892 INFO : Finished importing Sample Status Data
11 Sep 2025 14:19:01,896 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
11 Sep 2025 14:19:01,897 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
11 Sep 2025 14:19:01,897 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
11 Sep 2025 14:19:01,898 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
11 Sep 2025 14:19:01,898 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
11 Sep 2025 14:19:01,898 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
11 Sep 2025 14:19:01,899 INFO : Moving files to folder /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/Cohort samples and creating symlinks
11 Sep 2025 14:19:02,242 INFO : Aligning data files urls in folder: /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/Cohort samples
11 Sep 2025 14:19:02,250 INFO : Updating skydDataIds in folder: /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/Cohort samples
11 Sep 2025 14:19:02,251 INFO : Done importing folder archive for Cohort samples
11 Sep 2025 14:19:02,270 INFO : New folder created with inherited permissions: /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/Intra and Inter Day Precision
11 Sep 2025 14:19:02,270 INFO : Loading folder archive for Intra and Inter Day Precision
11 Sep 2025 14:19:02,271 INFO : Loading folder properties (folder type, settings and active modules)
11 Sep 2025 14:19:02,300 INFO : Done importing folder properties (folder type, settings and active modules)
11 Sep 2025 14:19:02,301 INFO : Loading container specific module properties
11 Sep 2025 14:19:02,305 INFO : Done importing container specific module properties
11 Sep 2025 14:19:02,306 INFO : Loading queries
11 Sep 2025 14:19:02,309 INFO : 1 query imported
11 Sep 2025 14:19:02,309 INFO : Done importing queries
11 Sep 2025 14:19:02,309 INFO : Loading etl definitions
11 Sep 2025 14:19:02,310 INFO : Loading wikis
11 Sep 2025 14:19:02,311 INFO : 0 wikis imported
11 Sep 2025 14:19:02,311 INFO : Done importing wikis
11 Sep 2025 14:19:02,312 INFO : Starting Data Class Importer
11 Sep 2025 14:19:02,312 INFO : No types XAR file to process.
11 Sep 2025 14:19:02,312 INFO : Finished Data Class Importer
11 Sep 2025 14:19:02,312 INFO : Starting to copy files to @files
11 Sep 2025 14:19:02,312 INFO : Copied 0 files to @files
11 Sep 2025 14:19:02,313 INFO : Starting to copy files to @assayfiles
11 Sep 2025 14:19:02,313 INFO : Copied 0 files to @assayfiles
11 Sep 2025 14:19:02,313 INFO : Ensuring exp.data rows exist for imported files
11 Sep 2025 14:19:02,315 INFO : Starting Sample Type Importer
11 Sep 2025 14:19:02,315 INFO : No types XAR file to process.
11 Sep 2025 14:19:02,315 INFO : Finished Sample Type Importer
11 Sep 2025 14:19:02,316 INFO : Loading xar
11 Sep 2025 14:19:02,812 INFO : Starting import from Intra- and interday precision_part 1_ A1AT, A1AG, IgA.sky.zip
11 Sep 2025 14:19:02,814 INFO : Starting to import Skyline document from Intra- and interday precision_part 1_ A1AT, A1AG, IgA.sky.zip
11 Sep 2025 14:19:02,815 INFO : Expanding Intra- and interday precision_part 1_ A1AT, A1AG, IgA.skyd
11 Sep 2025 14:19:02,942 INFO : Expanding Intra- and interday precision_part 1_ A1AT, A1AG, IgA.sky.view
11 Sep 2025 14:19:02,942 INFO : Expanding Intra- and interday precision_part 1_ A1AT, A1AG, IgA.sky
11 Sep 2025 14:19:02,944 INFO : Reading Skyline file, Intra- and interday precision_part 1_ A1AT, A1AG, IgA.sky, to determine if the TransitionChromInfos in the document should be stored...
11 Sep 2025 14:19:02,946 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
11 Sep 2025 14:19:02,947 INFO : 2% Done
11 Sep 2025 14:19:02,948 INFO : Copying SKYD to temp directory for import purposes
11 Sep 2025 14:19:02,977 INFO : Copying complete
11 Sep 2025 14:19:03,111 INFO : Inserting IgA1
11 Sep 2025 14:19:03,113 INFO : 12% Done
11 Sep 2025 14:19:03,139 INFO : Inserting IgA1+2
11 Sep 2025 14:19:03,141 INFO : 21% Done
11 Sep 2025 14:19:03,163 INFO : 29% Done
11 Sep 2025 14:19:03,184 INFO : Inserting IgA2
11 Sep 2025 14:19:03,186 INFO : 38% Done
11 Sep 2025 14:19:03,206 INFO : Inserting A1AT
11 Sep 2025 14:19:03,208 INFO : 46% Done
11 Sep 2025 14:19:03,229 INFO : 55% Done
11 Sep 2025 14:19:03,252 INFO : 64% Done
11 Sep 2025 14:19:03,272 INFO : Inserting A1AG1
11 Sep 2025 14:19:03,274 INFO : 73% Done
11 Sep 2025 14:19:03,296 INFO : 80% Done
11 Sep 2025 14:19:03,317 INFO : 81% Done
11 Sep 2025 14:19:03,317 INFO : Inserting A1AG2
11 Sep 2025 14:19:03,319 INFO : 90% Done
11 Sep 2025 14:19:03,344 INFO : 98% Done
11 Sep 2025 14:19:03,367 INFO : Done parsing Skyline document.
11 Sep 2025 14:19:03,368 INFO : Creating and populating temp tables for Proportion values
11 Sep 2025 14:19:03,372 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Sep 2025 14:19:03,382 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Sep 2025 14:19:03,386 INFO : Cleaning up temp tables
11 Sep 2025 14:19:03,394 INFO : Deleted temp copy of SKYD file
11 Sep 2025 14:19:03,394 INFO : Completed import of Skyline document from Intra- and interday precision_part 1_ A1AT, A1AG, IgA.sky.zip
11 Sep 2025 14:19:03,395 INFO : 100% Done
11 Sep 2025 14:19:03,401 INFO : Starting import from Intra- and interday precision_part 2.sky.zip
11 Sep 2025 14:19:03,402 INFO : Starting to import Skyline document from Intra- and interday precision_part 2.sky.zip
11 Sep 2025 14:19:03,403 INFO : Expanding Intra- and interday precision_part 2.skyd
11 Sep 2025 14:19:03,552 INFO : Expanding Intra- and interday precision_part 2.sky.view
11 Sep 2025 14:19:03,552 INFO : Expanding Intra- and interday precision_part 2.sky
11 Sep 2025 14:19:03,559 INFO : Reading Skyline file, Intra- and interday precision_part 2.sky, to determine if the TransitionChromInfos in the document should be stored...
11 Sep 2025 14:19:03,567 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
11 Sep 2025 14:19:03,568 INFO : 1% Done
11 Sep 2025 14:19:03,568 INFO : Copying SKYD to temp directory for import purposes
11 Sep 2025 14:19:03,602 INFO : Copying complete
11 Sep 2025 14:19:03,726 INFO : Inserting transferrin
11 Sep 2025 14:19:03,728 INFO : 3% Done
11 Sep 2025 14:19:03,756 INFO : 5% Done
11 Sep 2025 14:19:03,783 INFO : 7% Done
11 Sep 2025 14:19:03,810 INFO : 10% Done
11 Sep 2025 14:19:03,835 INFO : Inserting haptoglobin
11 Sep 2025 14:19:03,837 INFO : 12% Done
11 Sep 2025 14:19:03,863 INFO : 14% Done
11 Sep 2025 14:19:03,889 INFO : Inserting hemopexin
11 Sep 2025 14:19:03,891 INFO : 16% Done
11 Sep 2025 14:19:03,918 INFO : 18% Done
11 Sep 2025 14:19:03,941 INFO : Inserting IgG1
11 Sep 2025 14:19:03,943 INFO : 21% Done
11 Sep 2025 14:19:03,966 INFO : 23% Done
11 Sep 2025 14:19:03,988 INFO : Inserting IgG1+2+3+4
11 Sep 2025 14:19:03,990 INFO : 25% Done
11 Sep 2025 14:19:04,012 INFO : Inserting IgG2
11 Sep 2025 14:19:04,013 INFO : 26% Done
11 Sep 2025 14:19:04,035 INFO : Inserting IgG3
11 Sep 2025 14:19:04,037 INFO : 28% Done
11 Sep 2025 14:19:04,059 INFO : Inserting IgG4
11 Sep 2025 14:19:04,061 INFO : 30% Done
11 Sep 2025 14:19:04,083 INFO : Inserting fibrinogen alpha
11 Sep 2025 14:19:04,085 INFO : 33% Done
11 Sep 2025 14:19:04,108 INFO : 35% Done
11 Sep 2025 14:19:04,130 INFO : Inserting fibrinogen beta
11 Sep 2025 14:19:04,132 INFO : 37% Done
11 Sep 2025 14:19:04,155 INFO : 39% Done
11 Sep 2025 14:19:04,176 INFO : Inserting fibrinogen gamma
11 Sep 2025 14:19:04,178 INFO : 42% Done
11 Sep 2025 14:19:04,201 INFO : 44% Done
11 Sep 2025 14:19:04,223 INFO : Inserting IgM
11 Sep 2025 14:19:04,225 INFO : 46% Done
11 Sep 2025 14:19:04,248 INFO : 48% Done
11 Sep 2025 14:19:04,271 INFO : Inserting vitronection
11 Sep 2025 14:19:04,273 INFO : 50% Done
11 Sep 2025 14:19:04,296 INFO : 52% Done
11 Sep 2025 14:19:04,316 INFO : Inserting alpha-2-macroglobulin
11 Sep 2025 14:19:04,318 INFO : 54% Done
11 Sep 2025 14:19:04,341 INFO : 57% Done
11 Sep 2025 14:19:04,363 INFO : Inserting alpha-1B-glycoprotein
11 Sep 2025 14:19:04,364 INFO : 59% Done
11 Sep 2025 14:19:04,388 INFO : 61% Done
11 Sep 2025 14:19:04,411 INFO : 63% Done
11 Sep 2025 14:19:04,429 INFO : Inserting alpha-2-HS-glycoprotein
11 Sep 2025 14:19:04,431 INFO : 65% Done
11 Sep 2025 14:19:04,455 INFO : 67% Done
11 Sep 2025 14:19:04,479 INFO : 69% Done
11 Sep 2025 14:19:04,501 INFO : Inserting ceruroplasmin
11 Sep 2025 14:19:04,503 INFO : 71% Done
11 Sep 2025 14:19:04,526 INFO : 74% Done
11 Sep 2025 14:19:04,548 INFO : Inserting antithrombin-III
11 Sep 2025 14:19:04,550 INFO : 75% Done
11 Sep 2025 14:19:04,573 INFO : 77% Done
11 Sep 2025 14:19:04,597 INFO : 79% Done
11 Sep 2025 14:19:04,619 INFO : Inserting ApoB
11 Sep 2025 14:19:04,621 INFO : 81% Done
11 Sep 2025 14:19:04,644 INFO : 84% Done
11 Sep 2025 14:19:04,666 INFO : Inserting ApoD
11 Sep 2025 14:19:04,668 INFO : 86% Done
11 Sep 2025 14:19:04,692 INFO : 88% Done
11 Sep 2025 14:19:04,715 INFO : Inserting ApoF
11 Sep 2025 14:19:04,717 INFO : 90% Done
11 Sep 2025 14:19:04,740 INFO : 93% Done
11 Sep 2025 14:19:04,762 INFO : Inserting ApoH
11 Sep 2025 14:19:04,764 INFO : 95% Done
11 Sep 2025 14:19:04,788 INFO : 98% Done
11 Sep 2025 14:19:04,819 INFO : Done parsing Skyline document.
11 Sep 2025 14:19:04,820 INFO : Creating and populating temp tables for Proportion values
11 Sep 2025 14:19:04,825 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Sep 2025 14:19:04,871 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Sep 2025 14:19:04,887 INFO : Cleaning up temp tables
11 Sep 2025 14:19:04,897 INFO : Deleted temp copy of SKYD file
11 Sep 2025 14:19:04,898 INFO : Completed import of Skyline document from Intra- and interday precision_part 2.sky.zip
11 Sep 2025 14:19:04,899 INFO : 100% Done
11 Sep 2025 14:19:05,314 INFO : Done importing xar
11 Sep 2025 14:19:05,315 INFO : Loading pages and webpart properties
11 Sep 2025 14:19:05,359 INFO : Done importing 3 page(s) with 4 webpart(s)
11 Sep 2025 14:19:05,359 INFO : Loading File Browser config
11 Sep 2025 14:19:05,359 INFO : Done importing File Browser config
11 Sep 2025 14:19:05,360 INFO : Starting Sample Status Data import
11 Sep 2025 14:19:05,360 INFO : No sample types XAR file to process.
11 Sep 2025 14:19:05,360 INFO : Finished importing Sample Status Data
11 Sep 2025 14:19:05,364 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
11 Sep 2025 14:19:05,365 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
11 Sep 2025 14:19:05,365 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
11 Sep 2025 14:19:05,365 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
11 Sep 2025 14:19:05,366 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
11 Sep 2025 14:19:05,366 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
11 Sep 2025 14:19:05,366 INFO : Moving files to folder /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/Intra and Inter Day Precision and creating symlinks
11 Sep 2025 14:19:05,455 INFO : Aligning data files urls in folder: /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/Intra and Inter Day Precision
11 Sep 2025 14:19:05,463 INFO : Updating skydDataIds in folder: /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/Intra and Inter Day Precision
11 Sep 2025 14:19:05,465 INFO : Done importing folder archive for Intra and Inter Day Precision
11 Sep 2025 14:19:05,482 INFO : New folder created with inherited permissions: /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/SPE Recovery
11 Sep 2025 14:19:05,482 INFO : Loading folder archive for SPE Recovery
11 Sep 2025 14:19:05,483 INFO : Loading folder properties (folder type, settings and active modules)
11 Sep 2025 14:19:05,512 INFO : Done importing folder properties (folder type, settings and active modules)
11 Sep 2025 14:19:05,513 INFO : Loading container specific module properties
11 Sep 2025 14:19:05,517 INFO : Done importing container specific module properties
11 Sep 2025 14:19:05,518 INFO : Loading queries
11 Sep 2025 14:19:05,520 INFO : 1 query imported
11 Sep 2025 14:19:05,520 INFO : Done importing queries
11 Sep 2025 14:19:05,520 INFO : Loading etl definitions
11 Sep 2025 14:19:05,521 INFO : Loading wikis
11 Sep 2025 14:19:05,522 INFO : 0 wikis imported
11 Sep 2025 14:19:05,522 INFO : Done importing wikis
11 Sep 2025 14:19:05,523 INFO : Starting Data Class Importer
11 Sep 2025 14:19:05,523 INFO : No types XAR file to process.
11 Sep 2025 14:19:05,523 INFO : Finished Data Class Importer
11 Sep 2025 14:19:05,523 INFO : Starting to copy files to @files
11 Sep 2025 14:19:05,523 INFO : Copied 0 files to @files
11 Sep 2025 14:19:05,524 INFO : Starting to copy files to @assayfiles
11 Sep 2025 14:19:05,524 INFO : Copied 0 files to @assayfiles
11 Sep 2025 14:19:05,524 INFO : Ensuring exp.data rows exist for imported files
11 Sep 2025 14:19:05,526 INFO : Starting Sample Type Importer
11 Sep 2025 14:19:05,526 INFO : No types XAR file to process.
11 Sep 2025 14:19:05,526 INFO : Finished Sample Type Importer
11 Sep 2025 14:19:05,527 INFO : Loading xar
11 Sep 2025 14:19:05,829 INFO : Starting import from SPE recovery_part 1_A1AT, A1AG, IgA.sky.zip
11 Sep 2025 14:19:05,831 INFO : Starting to import Skyline document from SPE recovery_part 1_A1AT, A1AG, IgA.sky.zip
11 Sep 2025 14:19:05,831 INFO : Expanding SPE recovery_part 1.skyd
11 Sep 2025 14:19:05,907 INFO : Expanding SPE recovery_part 1.sky.view
11 Sep 2025 14:19:05,908 INFO : Expanding SPE recovery_part 1.sky
11 Sep 2025 14:19:05,909 INFO : Reading Skyline file, SPE recovery_part 1.sky, to determine if the TransitionChromInfos in the document should be stored...
11 Sep 2025 14:19:05,911 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
11 Sep 2025 14:19:05,912 INFO : 2% Done
11 Sep 2025 14:19:05,912 INFO : Copying SKYD to temp directory for import purposes
11 Sep 2025 14:19:05,933 INFO : Copying complete
11 Sep 2025 14:19:06,058 INFO : Inserting A1AT
11 Sep 2025 14:19:06,060 INFO : 12% Done
11 Sep 2025 14:19:06,077 INFO : 21% Done
11 Sep 2025 14:19:06,093 INFO : 29% Done
11 Sep 2025 14:19:06,108 INFO : Inserting A1AG1
11 Sep 2025 14:19:06,109 INFO : 38% Done
11 Sep 2025 14:19:06,125 INFO : 47% Done
11 Sep 2025 14:19:06,139 INFO : Inserting A1AG2
11 Sep 2025 14:19:06,140 INFO : 56% Done
11 Sep 2025 14:19:06,158 INFO : 65% Done
11 Sep 2025 14:19:06,172 INFO : Inserting IgA1
11 Sep 2025 14:19:06,174 INFO : 73% Done
11 Sep 2025 14:19:06,189 INFO : Inserting IgA2
11 Sep 2025 14:19:06,191 INFO : 81% Done
11 Sep 2025 14:19:06,206 INFO : Inserting IgA1+2
11 Sep 2025 14:19:06,207 INFO : 90% Done
11 Sep 2025 14:19:06,223 INFO : 98% Done
11 Sep 2025 14:19:06,237 INFO : Done parsing Skyline document.
11 Sep 2025 14:19:06,238 INFO : Creating and populating temp tables for Proportion values
11 Sep 2025 14:19:06,241 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Sep 2025 14:19:06,248 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Sep 2025 14:19:06,251 INFO : Cleaning up temp tables
11 Sep 2025 14:19:06,257 INFO : Deleted temp copy of SKYD file
11 Sep 2025 14:19:06,257 INFO : Completed import of Skyline document from SPE recovery_part 1_A1AT, A1AG, IgA.sky.zip
11 Sep 2025 14:19:06,259 INFO : 100% Done
11 Sep 2025 14:19:06,264 INFO : Starting import from SPE_recovery_part 2.sky.zip
11 Sep 2025 14:19:06,265 INFO : Starting to import Skyline document from SPE_recovery_part 2.sky.zip
11 Sep 2025 14:19:06,266 INFO : Expanding SPE_recovery_part 2.skyd
11 Sep 2025 14:19:06,349 INFO : Expanding SPE_recovery_part 2.sky.view
11 Sep 2025 14:19:06,349 INFO : Expanding SPE_recovery_part 2.sky
11 Sep 2025 14:19:06,354 INFO : Reading Skyline file, SPE_recovery_part 2.sky, to determine if the TransitionChromInfos in the document should be stored...
11 Sep 2025 14:19:06,359 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
11 Sep 2025 14:19:06,360 INFO : 1% Done
11 Sep 2025 14:19:06,360 INFO : Copying SKYD to temp directory for import purposes
11 Sep 2025 14:19:06,379 INFO : Copying complete
11 Sep 2025 14:19:06,499 INFO : Inserting transferrin
11 Sep 2025 14:19:06,502 INFO : 3% Done
11 Sep 2025 14:19:06,519 INFO : 5% Done
11 Sep 2025 14:19:06,535 INFO : 8% Done
11 Sep 2025 14:19:06,550 INFO : 10% Done
11 Sep 2025 14:19:06,564 INFO : Inserting haptoglobin
11 Sep 2025 14:19:06,566 INFO : 12% Done
11 Sep 2025 14:19:06,581 INFO : 14% Done
11 Sep 2025 14:19:06,596 INFO : Inserting hemopexin
11 Sep 2025 14:19:06,597 INFO : 16% Done
11 Sep 2025 14:19:06,613 INFO : 19% Done
11 Sep 2025 14:19:06,627 INFO : Inserting IgG1
11 Sep 2025 14:19:06,629 INFO : 21% Done
11 Sep 2025 14:19:06,644 INFO : 23% Done
11 Sep 2025 14:19:06,658 INFO : Inserting IgG1+2+3+4
11 Sep 2025 14:19:06,660 INFO : 25% Done
11 Sep 2025 14:19:06,674 INFO : Inserting IgG2
11 Sep 2025 14:19:06,675 INFO : 27% Done
11 Sep 2025 14:19:06,690 INFO : Inserting IgG3
11 Sep 2025 14:19:06,691 INFO : 29% Done
11 Sep 2025 14:19:06,706 INFO : Inserting IgG4
11 Sep 2025 14:19:06,707 INFO : 31% Done
11 Sep 2025 14:19:06,721 INFO : Inserting fibrinogen alpha
11 Sep 2025 14:19:06,723 INFO : 34% Done
11 Sep 2025 14:19:06,739 INFO : 36% Done
11 Sep 2025 14:19:06,753 INFO : Inserting fibrinogen beta
11 Sep 2025 14:19:06,754 INFO : 38% Done
11 Sep 2025 14:19:06,770 INFO : 40% Done
11 Sep 2025 14:19:06,784 INFO : Inserting fibrinogen gamma
11 Sep 2025 14:19:06,786 INFO : 42% Done
11 Sep 2025 14:19:06,801 INFO : 45% Done
11 Sep 2025 14:19:06,816 INFO : Inserting IgM
11 Sep 2025 14:19:06,817 INFO : 47% Done
11 Sep 2025 14:19:06,833 INFO : 49% Done
11 Sep 2025 14:19:06,848 INFO : Inserting vitronection
11 Sep 2025 14:19:06,849 INFO : 51% Done
11 Sep 2025 14:19:06,865 INFO : 53% Done
11 Sep 2025 14:19:06,876 INFO : Inserting alpha-2-macroglobulin
11 Sep 2025 14:19:06,878 INFO : 55% Done
11 Sep 2025 14:19:06,894 INFO : 57% Done
11 Sep 2025 14:19:06,908 INFO : Inserting alpha-1B-glycoprotein
11 Sep 2025 14:19:06,909 INFO : 60% Done
11 Sep 2025 14:19:06,925 INFO : 62% Done
11 Sep 2025 14:19:06,940 INFO : 64% Done
11 Sep 2025 14:19:06,954 INFO : Inserting alpha-2-HS-glycoprotein
11 Sep 2025 14:19:06,956 INFO : 66% Done
11 Sep 2025 14:19:06,972 INFO : 68% Done
11 Sep 2025 14:19:06,991 INFO : 70% Done
11 Sep 2025 14:19:07,006 INFO : Inserting ceruroplasmin
11 Sep 2025 14:19:07,008 INFO : 73% Done
11 Sep 2025 14:19:07,025 INFO : 74% Done
11 Sep 2025 14:19:07,041 INFO : Inserting antithrombin-III
11 Sep 2025 14:19:07,043 INFO : 76% Done
11 Sep 2025 14:19:07,059 INFO : 78% Done
11 Sep 2025 14:19:07,074 INFO : 81% Done
11 Sep 2025 14:19:07,089 INFO : Inserting ApoB
11 Sep 2025 14:19:07,090 INFO : 83% Done
11 Sep 2025 14:19:07,107 INFO : 85% Done
11 Sep 2025 14:19:07,121 INFO : Inserting ApoD
11 Sep 2025 14:19:07,123 INFO : 87% Done
11 Sep 2025 14:19:07,136 INFO : 89% Done
11 Sep 2025 14:19:07,151 INFO : Inserting ApoF
11 Sep 2025 14:19:07,154 INFO : 91% Done
11 Sep 2025 14:19:07,170 INFO : 94% Done
11 Sep 2025 14:19:07,188 INFO : Inserting ApoH
11 Sep 2025 14:19:07,190 INFO : 96% Done
11 Sep 2025 14:19:07,206 INFO : 98% Done
11 Sep 2025 14:19:07,221 INFO : Done parsing Skyline document.
11 Sep 2025 14:19:07,221 INFO : Creating and populating temp tables for Proportion values
11 Sep 2025 14:19:07,226 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
11 Sep 2025 14:19:07,257 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
11 Sep 2025 14:19:07,268 INFO : Cleaning up temp tables
11 Sep 2025 14:19:07,276 INFO : Deleted temp copy of SKYD file
11 Sep 2025 14:19:07,276 INFO : Completed import of Skyline document from SPE_recovery_part 2.sky.zip
11 Sep 2025 14:19:07,278 INFO : 100% Done
11 Sep 2025 14:19:07,693 INFO : Done importing xar
11 Sep 2025 14:19:07,694 INFO : Loading pages and webpart properties
11 Sep 2025 14:19:07,740 INFO : Done importing 3 page(s) with 4 webpart(s)
11 Sep 2025 14:19:07,740 INFO : Loading File Browser config
11 Sep 2025 14:19:07,740 INFO : Done importing File Browser config
11 Sep 2025 14:19:07,740 INFO : Starting Sample Status Data import
11 Sep 2025 14:19:07,741 INFO : No sample types XAR file to process.
11 Sep 2025 14:19:07,741 INFO : Finished importing Sample Status Data
11 Sep 2025 14:19:07,744 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
11 Sep 2025 14:19:07,745 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
11 Sep 2025 14:19:07,746 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
11 Sep 2025 14:19:07,746 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
11 Sep 2025 14:19:07,746 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
11 Sep 2025 14:19:07,746 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
11 Sep 2025 14:19:07,747 INFO : Moving files to folder /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/SPE Recovery and creating symlinks
11 Sep 2025 14:19:07,811 INFO : Aligning data files urls in folder: /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/SPE Recovery
11 Sep 2025 14:19:07,819 INFO : Updating skydDataIds in folder: /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025/SPE Recovery
11 Sep 2025 14:19:07,821 INFO : Done importing folder archive for SPE Recovery
11 Sep 2025 14:19:07,821 INFO : Done importing subfolders and container tabs
11 Sep 2025 14:19:07,822 INFO : Moving files to folder /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025 and creating symlinks
11 Sep 2025 14:19:07,828 INFO : Aligning data files urls in folder: /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025
11 Sep 2025 14:19:07,828 INFO : Updating skydDataIds in folder: /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025
11 Sep 2025 14:19:07,829 INFO : Importing files metadata.
11 Sep 2025 14:19:07,833 INFO :
11 Sep 2025 14:19:07,833 INFO : Experiment import completed successfully.
11 Sep 2025 14:19:07,833 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
11 Sep 2025 14:19:07,849 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
11 Sep 2025 14:19:07,849 INFO :
11 Sep 2025 14:19:07,849 INFO : Checking for library folders.
11 Sep 2025 14:19:07,853 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
11 Sep 2025 14:19:07,866 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
11 Sep 2025 14:19:07,866 INFO :
11 Sep 2025 14:19:07,866 INFO : Finishing up experiment copy.
11 Sep 2025 14:19:07,867 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2025/U of Masaryk RECETOX - Benesova et al. Sci Rep 2025
11 Sep 2025 14:19:07,867 INFO : Setting version on new experiment to 1
11 Sep 2025 14:19:07,869 INFO : Updating permanent link to point to the new copy of the data.
11 Sep 2025 14:19:07,871 INFO : Removing copy permissions given to Panorama Public
11 Sep 2025 14:19:07,871 INFO : Adding read permissions to all users that are folder admins in the source folder.
11 Sep 2025 14:19:07,871 INFO : Assigning ReaderRole to spacil@recetox.muni.cz
11 Sep 2025 14:19:07,871 INFO : Assigning ReaderRole to eliska.benesova@recetox.muni.cz
11 Sep 2025 14:19:07,871 INFO : Assigning PanoramaPublicSubmitterRole to spacil@recetox.muni.cz
11 Sep 2025 14:19:07,871 INFO : Assigning PanoramaPublicSubmitterRole to eliska.benesova@recetox.muni.cz
11 Sep 2025 14:19:07,877 INFO : User spacil@recetox.muni.cz is already a member of group Panorama Public Submitters
11 Sep 2025 14:19:07,877 INFO : User eliska.benesova@recetox.muni.cz is already a member of group Panorama Public Submitters
11 Sep 2025 14:19:07,877 INFO : Updating the 'Raw Data' tab configuration
11 Sep 2025 14:19:07,879 INFO : Creating a reviewer account.
11 Sep 2025 14:19:07,923 INFO : Created reviewer with email: panorama+reviewer365@proteinms.net
11 Sep 2025 14:19:07,923 INFO : Generating password.
11 Sep 2025 14:19:08,059 INFO : Set reviewer password successfully.
11 Sep 2025 14:19:08,065 INFO : Adding user panorama+reviewer365@proteinms.net to group Reviewers
11 Sep 2025 14:19:08,066 INFO : Hiding the Data Pipeline tab.
11 Sep 2025 14:19:08,080 INFO : Updating Submission. Setting copiedExperimentId to 2131
11 Sep 2025 14:19:11,225 INFO : Assigning a ProteomeXchange ID.
11 Sep 2025 14:19:11,428 INFO : Assigned ProteomeXchange ID: PXD068295
11 Sep 2025 14:19:11,428 INFO : Assigning a DOI.
11 Sep 2025 14:19:13,061 INFO : Assigned DOI: 10.6069/xezp-6j22
11 Sep 2025 14:19:13,129 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'