25 Jun 2025 19:45:36,575 INFO : Validating data for a ProteomeXchange submission.

25 Jun 2025 19:45:36,576 INFO : =======================================

25 Jun 2025 19:45:36,589 DEBUG: Resetting Job ID: 3b606c02-3465-103e-9c0d-1cc91aa94300

25 Jun 2025 19:45:36,607 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask' at location 'webserver'

25 Jun 2025 19:45:36,608 INFO : Validating data for experiment Id: 2086, validation Id: 1648

25 Jun 2025 19:45:36,657 INFO : Validating data for 9 Skyline documents in 1 folders

25 Jun 2025 19:45:36,772 INFO : Sample file validation for Skyline document: LIT_GPF_survey_newAlign_MMCC_boundaries_opttrans_nochick_2024-06-02_15-26-11.sky.zip

25 Jun 2025 19:45:36,772 INFO :   Found all sample files.

25 Jun 2025 19:45:36,889 INFO : Sample file validation for Skyline document: OT_GPF_PRM_survey_MMCC_boundaries_opttrans_nochick_2024-06-03_14-36-08.sky.zip

25 Jun 2025 19:45:36,890 INFO :   Found all sample files.

25 Jun 2025 19:45:36,926 INFO : Sample file validation for Skyline document: Exp_CSF_MMCC_quant_all_adjBound_opttrans_nochick_2024-06-03_14-53-02.sky.zip

25 Jun 2025 19:45:36,926 INFO :   Found all sample files.

25 Jun 2025 19:45:36,956 INFO : Sample file validation for Skyline document: CSF_neurod105_assay_individuals_manual_2024-06-03_15-26-36.sky.zip

25 Jun 2025 19:45:36,956 INFO :   Found all sample files.

25 Jun 2025 19:45:37,048 INFO : Sample file validation for Skyline document: 230124_p2_neo_30min_3500targets_opt_trans_pepleveldilution_2024-06-04_06-58-16.sky.zip

25 Jun 2025 19:45:37,048 INFO :   Found all sample files.

25 Jun 2025 19:45:37,177 INFO : Sample file validation for Skyline document: 230305_ev2_prm_final_inj1_2024-06-04_07-32-10.sky.zip

25 Jun 2025 19:45:37,177 INFO :   Found all sample files.

25 Jun 2025 19:45:37,207 INFO : Sample file validation for Skyline document: 240207_gpf_2024-06-04_10-24-18.sky.zip

25 Jun 2025 19:45:37,207 INFO :   Found all sample files.

25 Jun 2025 19:45:37,231 INFO : Sample file validation for Skyline document: 2024-05 CSF LIT GPF-MSFragger-3.sky.zip

25 Jun 2025 19:45:37,231 INFO :   Found all sample files.

25 Jun 2025 19:45:37,238 INFO : Sample file validation for Skyline document: Exp_CSF_GPF_A_2024-05-06_21-16-47.sky.zip

25 Jun 2025 19:45:37,239 INFO :   Found all sample files.

25 Jun 2025 19:45:37,379 INFO : Modifications validation:

25 Jun 2025 19:45:37,380 INFO : VALID MODIFICATIONS:

25 Jun 2025 19:45:37,380 INFO : 11420: Carbamidomethyl (C): UNIMOD:4 - Carbamidomethyl

25 Jun 2025 19:45:37,380 INFO :     LIT_GPF_survey_newAlign_MMCC_boundaries_opttrans_nochick_2024-06-02_15-26-11.sky.zip

25 Jun 2025 19:45:37,380 INFO :     OT_GPF_PRM_survey_MMCC_boundaries_opttrans_nochick_2024-06-03_14-36-08.sky.zip

25 Jun 2025 19:45:37,380 INFO :     Exp_CSF_MMCC_quant_all_adjBound_opttrans_nochick_2024-06-03_14-53-02.sky.zip

25 Jun 2025 19:45:37,380 INFO :     CSF_neurod105_assay_individuals_manual_2024-06-03_15-26-36.sky.zip

25 Jun 2025 19:45:37,380 INFO :     Exp_CSF_GPF_A_2024-05-06_21-16-47.sky.zip

25 Jun 2025 19:45:37,380 INFO :     230124_p2_neo_30min_3500targets_opt_trans_pepleveldilution_2024-06-04_06-58-16.sky.zip

25 Jun 2025 19:45:37,380 INFO :     230305_ev2_prm_final_inj1_2024-06-04_07-32-10.sky.zip

25 Jun 2025 19:45:37,380 INFO :     240207_gpf_2024-06-04_10-24-18.sky.zip

25 Jun 2025 19:45:37,380 INFO :     2024-05 CSF LIT GPF-MSFragger-3.sky.zip

25 Jun 2025 19:45:37,380 INFO : 11421: Oxidation (M): UNIMOD:35 - Oxidation

25 Jun 2025 19:45:37,380 INFO :     230124_p2_neo_30min_3500targets_opt_trans_pepleveldilution_2024-06-04_06-58-16.sky.zip

25 Jun 2025 19:45:37,380 INFO :     230305_ev2_prm_final_inj1_2024-06-04_07-32-10.sky.zip

25 Jun 2025 19:45:37,380 INFO : 11422: Label:13C(6)15N(2) (C-term K): 

25 Jun 2025 19:45:37,380 INFO :     230305_ev2_prm_final_inj1_2024-06-04_07-32-10.sky.zip

25 Jun 2025 19:45:37,380 INFO : 11423: Label:13C(6)15N(4) (C-term R): 

25 Jun 2025 19:45:37,380 INFO :     230305_ev2_prm_final_inj1_2024-06-04_07-32-10.sky.zip

25 Jun 2025 19:45:37,381 INFO : INVALID MODIFICATIONS (No Unimod ID):

25 Jun 2025 19:45:37,383 INFO : Validating spectral library: 240207_gpf.blib

25 Jun 2025 19:45:37,482 INFO : '240207_gpf' (240207_gpf.blib) library in 1 Skyline documents was built with 8 raw files; 1 peptide Id files. Status: VALID

25 Jun 2025 19:45:37,483 INFO : Validating spectral library: LIT_GPF_survey_newAlign_MMCC_boundaries_opttrans_nochick.blib

25 Jun 2025 19:45:37,629 INFO : 'LIT_GPF_survey_newAlign_MMCC_boundaries_opttrans_nochick' (LIT_GPF_survey_newAlign_MMCC_boundaries_opttrans_nochick.blib) library in 1 Skyline documents was built with 12 raw files; 6 peptide Id files. Status: VALID

25 Jun 2025 19:45:37,630 INFO : Validating spectral library: Exp_CSF_MMCC_compquant.elib

25 Jun 2025 19:45:38,003 INFO : 'Exp_CSF_MMCC_quant' (Exp_CSF_MMCC_compquant.elib) library in 1 Skyline documents was built with 27 raw files; 0 peptide Id files. Status: VALID

25 Jun 2025 19:45:38,004 INFO : Validating spectral library: ES904_Neo_PRTC.blib

25 Jun 2025 19:45:38,020 INFO : 'ES904 Neo PRTC' (ES904_Neo_PRTC.blib) library in 1 Skyline documents was built with 1 raw files; 0 peptide Id files. Status: Prosit / Koina Library

25 Jun 2025 19:45:38,020 INFO :   MISSING FILES:

25 Jun 2025 19:45:38,020 INFO :     Spectrum File: Prositintensity_prosit_publication_v1

25 Jun 2025 19:45:38,021 INFO : Validating spectral library: 230304_ev2pool_survey_reddb.blib

25 Jun 2025 19:45:38,127 INFO : '230305_ev2_prm' (230304_ev2pool_survey_reddb.blib) library in 1 Skyline documents was built with 6 raw files; 1 peptide Id files. Status: VALID

25 Jun 2025 19:45:38,128 INFO : Validating spectral library: 2024-05 CSF LIT GPF-MSFragger-3.blib

25 Jun 2025 19:45:38,314 INFO : '2024-05 CSF LIT GPF-MSFragger-3' (2024-05 CSF LIT GPF-MSFragger-3.blib) library in 1 Skyline documents was built with 12 raw files; 6 peptide Id files. Status: VALID

25 Jun 2025 19:45:38,315 INFO : Validating spectral library: Exp_CSF_GPF_A.elib

25 Jun 2025 19:45:38,575 INFO : 'Exp_CSF_GPF_A' (Exp_CSF_GPF_A.elib) library in 2 Skyline documents was built with 6 raw files; 0 peptide Id files. Status: VALID

25 Jun 2025 19:45:38,576 INFO : Validating spectral library: 230120_p2_neo_30min_reddb_dia1th_survey.blib

25 Jun 2025 19:45:38,683 INFO : '230120_p2_neo_30min_reddb_dia1th_survey (230124_p2_neo_30min_redb_50human50chicken_check)' (230120_p2_neo_30min_reddb_dia1th_survey.blib) library in 1 Skyline documents was built with 6 raw files; 1 peptide Id files. Status: VALID

25 Jun 2025 19:45:38,684 INFO : Validating spectral library: CSF_neurod105_assay_individuals_manual.blib

25 Jun 2025 19:45:38,766 INFO : 'CSF_neurod105_assay_individuals_manual' (CSF_neurod105_assay_individuals_manual.blib) library in 1 Skyline documents was built with 8 raw files; 1 peptide Id files. Status: VALID

25 Jun 2025 19:45:38,766 INFO : Spectral library validation complete.

25 Jun 2025 19:45:38,767 INFO : Data validation is complete. Status is Complete

25 Jun 2025 19:45:38,767 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.PxDataValidationTask'