Copying experiment: Protein composition in ancient wheats is determined by ploidy level

KIT Food Chemistry - ATIs in landraces of different wheat varieties

Job Status

Created: 2025-04-28 10:30:02
Modified: 2025-04-28 10:30:24
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Protein composition in ancient wheats is determined by ploidy level
File Path: /data/labkey/files/Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties/@files/Experiment_2109.log
Files: Experiment_2109.log
Completed Runs: ATI_Samples_2023_2025-04-26_13-39-03.sky.zip
ATI_Samples_2021_2025-02-20_23-21-52.sky.zip
ATI_Response_2023_2025-04-26_13-25-06.sky.zip
ATI_Samples_2022_2025-02-20_23-31-07.sky.zip

Log File


28 Apr 2025 10:30:02,660 INFO : Copying experiment "Protein composition in ancient wheats is determined by ploidy level" from folder /KIT - Food Chemistry/ATIs in landraces of different wheat varieties to /Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties
28 Apr 2025 10:30:02,661 INFO : =======================================
28 Apr 2025 10:30:02,689 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
28 Apr 2025 10:30:02,689 INFO :
28 Apr 2025 10:30:02,689 INFO : Exporting experiment.
28 Apr 2025 10:30:07,384 INFO : Exporting files metadata.
28 Apr 2025 10:30:07,445 INFO :
28 Apr 2025 10:30:07,445 INFO : Experiment export completed successfully.
28 Apr 2025 10:30:07,445 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
28 Apr 2025 10:30:07,461 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
28 Apr 2025 10:30:07,461 INFO :
28 Apr 2025 10:30:07,461 INFO : Importing experiment.
28 Apr 2025 10:30:07,463 INFO : Loading folder properties (folder type, settings and active modules)
28 Apr 2025 10:30:07,495 INFO : Done importing folder properties (folder type, settings and active modules)
28 Apr 2025 10:30:07,495 INFO : Loading container specific module properties
28 Apr 2025 10:30:07,500 INFO : Done importing container specific module properties
28 Apr 2025 10:30:07,501 INFO : Loading queries
28 Apr 2025 10:30:07,503 INFO : 1 query imported
28 Apr 2025 10:30:07,503 INFO : Done importing queries
28 Apr 2025 10:30:07,504 INFO : Loading etl definitions
28 Apr 2025 10:30:07,505 INFO : Loading wikis
28 Apr 2025 10:30:07,505 INFO : 0 wikis imported
28 Apr 2025 10:30:07,505 INFO : Done importing wikis
28 Apr 2025 10:30:07,506 INFO : Starting Data Class Importer
28 Apr 2025 10:30:07,507 INFO : No types XAR file to process.
28 Apr 2025 10:30:07,507 INFO : Finished Data Class Importer
28 Apr 2025 10:30:07,507 INFO : Starting to copy files to @files
28 Apr 2025 10:30:07,507 INFO : Copied 0 files to @files
28 Apr 2025 10:30:07,507 INFO : Starting to copy files to @assayfiles
28 Apr 2025 10:30:07,507 INFO : Copied 0 files to @assayfiles
28 Apr 2025 10:30:07,507 INFO : Ensuring exp.data rows exist for imported files
28 Apr 2025 10:30:07,691 INFO : Loading lists
28 Apr 2025 10:30:07,694 INFO : Recreating list: Samples 2023
28 Apr 2025 10:30:07,770 INFO : Recreating list: Samples 2021
28 Apr 2025 10:30:07,813 INFO : Recreating list: Samples 2022
28 Apr 2025 10:30:07,900 INFO : Merged 9 row(s) into list: Samples 2023
28 Apr 2025 10:30:07,917 INFO : Merged 7 row(s) into list: Samples 2021
28 Apr 2025 10:30:07,923 INFO : Merged 10 row(s) into list: Samples 2022
28 Apr 2025 10:30:07,924 INFO : 3 lists imported successfully
28 Apr 2025 10:30:07,924 INFO : Done importing lists
28 Apr 2025 10:30:07,926 INFO : Starting Sample Type Importer
28 Apr 2025 10:30:07,926 INFO : No types XAR file to process.
28 Apr 2025 10:30:07,926 INFO : Finished Sample Type Importer
28 Apr 2025 10:30:07,927 INFO : Loading xar
28 Apr 2025 10:30:07,946 INFO : Done importing xar
28 Apr 2025 10:30:07,947 INFO : Loading pages and webpart properties
28 Apr 2025 10:30:07,992 INFO : Done importing 3 page(s) with 5 webpart(s)
28 Apr 2025 10:30:07,992 INFO : Loading File Browser config
28 Apr 2025 10:30:07,992 INFO : Done importing File Browser config
28 Apr 2025 10:30:07,993 INFO : Starting Sample Status Data import
28 Apr 2025 10:30:07,994 INFO : No sample types XAR file to process.
28 Apr 2025 10:30:07,994 INFO : Finished importing Sample Status Data
28 Apr 2025 10:30:07,998 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
28 Apr 2025 10:30:07,999 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
28 Apr 2025 10:30:07,999 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
28 Apr 2025 10:30:08,000 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
28 Apr 2025 10:30:08,000 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
28 Apr 2025 10:30:08,000 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
28 Apr 2025 10:30:08,001 INFO : Loading subfolders and container tabs
28 Apr 2025 10:30:08,042 INFO : New folder created with inherited permissions: /Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties/2021
28 Apr 2025 10:30:08,042 INFO : Loading folder archive for 2021
28 Apr 2025 10:30:08,044 INFO : Loading folder properties (folder type, settings and active modules)
28 Apr 2025 10:30:08,076 INFO : Done importing folder properties (folder type, settings and active modules)
28 Apr 2025 10:30:08,077 INFO : Loading container specific module properties
28 Apr 2025 10:30:08,084 INFO : Done importing container specific module properties
28 Apr 2025 10:30:08,085 INFO : Loading queries
28 Apr 2025 10:30:08,087 INFO : 1 query imported
28 Apr 2025 10:30:08,087 INFO : Done importing queries
28 Apr 2025 10:30:08,088 INFO : Loading etl definitions
28 Apr 2025 10:30:08,089 INFO : Loading wikis
28 Apr 2025 10:30:08,089 INFO : 0 wikis imported
28 Apr 2025 10:30:08,089 INFO : Done importing wikis
28 Apr 2025 10:30:08,091 INFO : Starting Data Class Importer
28 Apr 2025 10:30:08,091 INFO : No types XAR file to process.
28 Apr 2025 10:30:08,091 INFO : Finished Data Class Importer
28 Apr 2025 10:30:08,092 INFO : Starting to copy files to @files
28 Apr 2025 10:30:08,092 INFO : Copied 0 files to @files
28 Apr 2025 10:30:08,093 INFO : Starting to copy files to @assayfiles
28 Apr 2025 10:30:08,093 INFO : Copied 0 files to @assayfiles
28 Apr 2025 10:30:08,093 INFO : Ensuring exp.data rows exist for imported files
28 Apr 2025 10:30:08,095 INFO : Starting Sample Type Importer
28 Apr 2025 10:30:08,095 INFO : No types XAR file to process.
28 Apr 2025 10:30:08,095 INFO : Finished Sample Type Importer
28 Apr 2025 10:30:08,096 INFO : Loading xar
28 Apr 2025 10:30:08,231 INFO : Starting import from ATI_Samples_2021_2025-02-20_23-21-52.sky.zip
28 Apr 2025 10:30:08,233 INFO : Starting to import Skyline document from ATI_Samples_2021_2025-02-20_23-21-52.sky.zip
28 Apr 2025 10:30:08,237 INFO : Expanding ATI_Samples_2021.skyd
28 Apr 2025 10:30:08,288 INFO : Expanding ATI_Samples_2021.sky.view
28 Apr 2025 10:30:08,289 INFO : Expanding ATI_Samples_2021.sky
28 Apr 2025 10:30:08,298 INFO : Reading Skyline file, ATI_Samples_2021.sky, to determine if the TransitionChromInfos in the document should be stored...
28 Apr 2025 10:30:08,309 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
28 Apr 2025 10:30:08,311 INFO : 1% Done
28 Apr 2025 10:30:08,311 INFO : Copying SKYD to temp directory for import purposes
28 Apr 2025 10:30:08,330 INFO : Copying complete
28 Apr 2025 10:30:08,511 INFO : Inserting 0.28 sp|P01083|IAA2_WHEAT
28 Apr 2025 10:30:08,517 INFO : 5% Done
28 Apr 2025 10:30:08,584 INFO : 10% Done
28 Apr 2025 10:30:08,644 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT
28 Apr 2025 10:30:08,650 INFO : 14% Done
28 Apr 2025 10:30:08,713 INFO : 19% Done
28 Apr 2025 10:30:08,774 INFO : 23% Done
28 Apr 2025 10:30:08,831 INFO : Inserting 0.53 sp|P01084|IAA5_WHEAT
28 Apr 2025 10:30:08,836 INFO : 27% Done
28 Apr 2025 10:30:08,891 INFO : Inserting CM1 sp|P16850|IAAC1_WHEAT
28 Apr 2025 10:30:08,895 INFO : 30% Done
28 Apr 2025 10:30:08,936 INFO : Inserting CM2 sp|P16851|IAAC2_WHEAT
28 Apr 2025 10:30:08,941 INFO : 34% Done
28 Apr 2025 10:30:08,997 INFO : 39% Done
28 Apr 2025 10:30:09,050 INFO : Inserting CM3 sp|P17314|IAAC3_WHEAT
28 Apr 2025 10:30:09,054 INFO : 43% Done
28 Apr 2025 10:30:09,110 INFO : 48% Done
28 Apr 2025 10:30:09,163 INFO : Inserting CM16 sp|P16159|IAC16_WHEAT
28 Apr 2025 10:30:09,167 INFO : 51% Done
28 Apr 2025 10:30:09,216 INFO : 56% Done
28 Apr 2025 10:30:09,272 INFO : 60% Done
28 Apr 2025 10:30:09,326 INFO : Inserting CM17 tr|Q41540|Q41540_WHEAT
28 Apr 2025 10:30:09,330 INFO : 65% Done
28 Apr 2025 10:30:09,383 INFO : Inserting WASI sp|P16347|IAAS_WHEAT
28 Apr 2025 10:30:09,387 INFO : 68% Done
28 Apr 2025 10:30:09,436 INFO : 73% Done
28 Apr 2025 10:30:09,491 INFO : Inserting CMX1/3 sp|Q43723|IACX1_WHEAT
28 Apr 2025 10:30:09,495 INFO : 76% Done
28 Apr 2025 10:30:09,554 INFO : 80% Done
28 Apr 2025 10:30:09,607 INFO : Inserting WCI sp|P83207|ICIW2_WHEAT
28 Apr 2025 10:30:09,611 INFO : 85% Done
28 Apr 2025 10:30:09,666 INFO : 89% Done
28 Apr 2025 10:30:09,721 INFO : Inserting sp|P-----|IBB3_WHEAT
28 Apr 2025 10:30:09,725 INFO : 94% Done
28 Apr 2025 10:30:09,780 INFO : 98% Done
28 Apr 2025 10:30:09,834 INFO : Done parsing Skyline document.
28 Apr 2025 10:30:09,834 INFO : Creating and populating temp tables for Proportion values
28 Apr 2025 10:30:09,841 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
28 Apr 2025 10:30:09,877 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
28 Apr 2025 10:30:09,890 INFO : Cleaning up temp tables
28 Apr 2025 10:30:10,195 INFO : Deleted temp copy of SKYD file
28 Apr 2025 10:30:10,195 INFO : Completed import of Skyline document from ATI_Samples_2021_2025-02-20_23-21-52.sky.zip
28 Apr 2025 10:30:10,197 INFO : 100% Done
28 Apr 2025 10:30:10,391 INFO : Done importing xar
28 Apr 2025 10:30:10,392 INFO : Loading pages and webpart properties
28 Apr 2025 10:30:10,436 INFO : Done importing 3 page(s) with 4 webpart(s)
28 Apr 2025 10:30:10,437 INFO : Loading File Browser config
28 Apr 2025 10:30:10,437 INFO : Done importing File Browser config
28 Apr 2025 10:30:10,437 INFO : Starting Sample Status Data import
28 Apr 2025 10:30:10,438 INFO : No sample types XAR file to process.
28 Apr 2025 10:30:10,438 INFO : Finished importing Sample Status Data
28 Apr 2025 10:30:10,441 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
28 Apr 2025 10:30:10,443 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
28 Apr 2025 10:30:10,443 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
28 Apr 2025 10:30:10,443 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
28 Apr 2025 10:30:10,443 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
28 Apr 2025 10:30:10,443 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
28 Apr 2025 10:30:10,445 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
28 Apr 2025 10:30:10,449 INFO : Adding runs imported in subfolders.
28 Apr 2025 10:30:10,456 INFO : Moving files to folder /Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties/2021 and creating symlinks
28 Apr 2025 10:30:10,531 INFO : Aligning data files urls in folder: /Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties/2021
28 Apr 2025 10:30:10,536 INFO : Updating skydDataIds in folder: /Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties/2021
28 Apr 2025 10:30:10,538 INFO : Done importing folder archive for 2021
28 Apr 2025 10:30:10,574 INFO : New folder created with inherited permissions: /Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties/2022
28 Apr 2025 10:30:10,574 INFO : Loading folder archive for 2022
28 Apr 2025 10:30:10,575 INFO : Loading folder properties (folder type, settings and active modules)
28 Apr 2025 10:30:10,604 INFO : Done importing folder properties (folder type, settings and active modules)
28 Apr 2025 10:30:10,605 INFO : Loading container specific module properties
28 Apr 2025 10:30:10,609 INFO : Done importing container specific module properties
28 Apr 2025 10:30:10,610 INFO : Loading queries
28 Apr 2025 10:30:10,612 INFO : 1 query imported
28 Apr 2025 10:30:10,612 INFO : Done importing queries
28 Apr 2025 10:30:10,612 INFO : Loading etl definitions
28 Apr 2025 10:30:10,613 INFO : Loading wikis
28 Apr 2025 10:30:10,614 INFO : 0 wikis imported
28 Apr 2025 10:30:10,614 INFO : Done importing wikis
28 Apr 2025 10:30:10,615 INFO : Starting Data Class Importer
28 Apr 2025 10:30:10,615 INFO : No types XAR file to process.
28 Apr 2025 10:30:10,615 INFO : Finished Data Class Importer
28 Apr 2025 10:30:10,616 INFO : Starting to copy files to @files
28 Apr 2025 10:30:10,616 INFO : Copied 0 files to @files
28 Apr 2025 10:30:10,617 INFO : Starting to copy files to @assayfiles
28 Apr 2025 10:30:10,617 INFO : Copied 0 files to @assayfiles
28 Apr 2025 10:30:10,617 INFO : Ensuring exp.data rows exist for imported files
28 Apr 2025 10:30:10,620 INFO : Starting Sample Type Importer
28 Apr 2025 10:30:10,620 INFO : No types XAR file to process.
28 Apr 2025 10:30:10,620 INFO : Finished Sample Type Importer
28 Apr 2025 10:30:10,620 INFO : Loading xar
28 Apr 2025 10:30:10,761 INFO : Starting import from ATI_Samples_2022_2025-02-20_23-31-07.sky.zip
28 Apr 2025 10:30:10,763 INFO : Starting to import Skyline document from ATI_Samples_2022_2025-02-20_23-31-07.sky.zip
28 Apr 2025 10:30:10,763 INFO : Expanding ATI_Samples_2022.skyd
28 Apr 2025 10:30:10,821 INFO : Expanding ATI_Samples_2022.sky.view
28 Apr 2025 10:30:10,821 INFO : Expanding ATI_Samples_2022.sky
28 Apr 2025 10:30:10,835 INFO : Reading Skyline file, ATI_Samples_2022.sky, to determine if the TransitionChromInfos in the document should be stored...
28 Apr 2025 10:30:10,873 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
28 Apr 2025 10:30:10,875 INFO : 1% Done
28 Apr 2025 10:30:10,875 INFO : Copying SKYD to temp directory for import purposes
28 Apr 2025 10:30:10,896 INFO : Copying complete
28 Apr 2025 10:30:11,065 INFO : Inserting 0.28 sp|P01083|IAA2_WHEAT
28 Apr 2025 10:30:11,071 INFO : 5% Done
28 Apr 2025 10:30:11,175 INFO : 10% Done
28 Apr 2025 10:30:11,275 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT
28 Apr 2025 10:30:11,283 INFO : 14% Done
28 Apr 2025 10:30:11,378 INFO : 19% Done
28 Apr 2025 10:30:11,466 INFO : 23% Done
28 Apr 2025 10:30:11,549 INFO : Inserting 0.53 sp|P01084|IAA5_WHEAT
28 Apr 2025 10:30:11,554 INFO : 26% Done
28 Apr 2025 10:30:11,639 INFO : Inserting CM1 sp|P16850|IAAC1_WHEAT
28 Apr 2025 10:30:11,644 INFO : 30% Done
28 Apr 2025 10:30:11,706 INFO : Inserting CM2 sp|P16851|IAAC2_WHEAT
28 Apr 2025 10:30:11,711 INFO : 34% Done
28 Apr 2025 10:30:11,791 INFO : 38% Done
28 Apr 2025 10:30:11,874 INFO : Inserting CM3 sp|P17314|IAAC3_WHEAT
28 Apr 2025 10:30:11,880 INFO : 43% Done
28 Apr 2025 10:30:11,966 INFO : 47% Done
28 Apr 2025 10:30:12,049 INFO : Inserting CM16 sp|P16159|IAC16_WHEAT
28 Apr 2025 10:30:12,054 INFO : 51% Done
28 Apr 2025 10:30:12,131 INFO : 56% Done
28 Apr 2025 10:30:12,218 INFO : 60% Done
28 Apr 2025 10:30:12,302 INFO : Inserting CM17 tr|Q41540|Q41540_WHEAT
28 Apr 2025 10:30:12,307 INFO : 64% Done
28 Apr 2025 10:30:12,391 INFO : 65% Done
28 Apr 2025 10:30:12,391 INFO : Inserting WASI sp|P16347|IAAS_WHEAT
28 Apr 2025 10:30:12,395 INFO : 68% Done
28 Apr 2025 10:30:12,472 INFO : 73% Done
28 Apr 2025 10:30:12,558 INFO : Inserting CMX1/3 sp|Q43723|IACX1_WHEAT
28 Apr 2025 10:30:12,563 INFO : 76% Done
28 Apr 2025 10:30:12,655 INFO : 80% Done
28 Apr 2025 10:30:12,739 INFO : 81% Done
28 Apr 2025 10:30:12,739 INFO : Inserting WCI sp|P83207|ICIW2_WHEAT
28 Apr 2025 10:30:12,744 INFO : 85% Done
28 Apr 2025 10:30:12,832 INFO : 89% Done
28 Apr 2025 10:30:12,922 INFO : Inserting sp|P-----|IBB3_WHEAT
28 Apr 2025 10:30:12,927 INFO : 94% Done
28 Apr 2025 10:30:13,015 INFO : 98% Done
28 Apr 2025 10:30:13,097 INFO : Done parsing Skyline document.
28 Apr 2025 10:30:13,098 INFO : Creating and populating temp tables for Proportion values
28 Apr 2025 10:30:13,106 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
28 Apr 2025 10:30:13,165 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
28 Apr 2025 10:30:13,187 INFO : Cleaning up temp tables
28 Apr 2025 10:30:13,459 INFO : Deleted temp copy of SKYD file
28 Apr 2025 10:30:13,459 INFO : Completed import of Skyline document from ATI_Samples_2022_2025-02-20_23-31-07.sky.zip
28 Apr 2025 10:30:13,461 INFO : 100% Done
28 Apr 2025 10:30:13,690 INFO : Done importing xar
28 Apr 2025 10:30:13,692 INFO : Loading pages and webpart properties
28 Apr 2025 10:30:13,735 INFO : Done importing 3 page(s) with 4 webpart(s)
28 Apr 2025 10:30:13,735 INFO : Loading File Browser config
28 Apr 2025 10:30:13,735 INFO : Done importing File Browser config
28 Apr 2025 10:30:13,736 INFO : Starting Sample Status Data import
28 Apr 2025 10:30:13,736 INFO : No sample types XAR file to process.
28 Apr 2025 10:30:13,736 INFO : Finished importing Sample Status Data
28 Apr 2025 10:30:13,740 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
28 Apr 2025 10:30:13,741 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
28 Apr 2025 10:30:13,741 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
28 Apr 2025 10:30:13,742 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
28 Apr 2025 10:30:13,742 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
28 Apr 2025 10:30:13,742 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
28 Apr 2025 10:30:13,743 INFO : Moving files to folder /Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties/2022 and creating symlinks
28 Apr 2025 10:30:13,844 INFO : Aligning data files urls in folder: /Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties/2022
28 Apr 2025 10:30:13,849 INFO : Updating skydDataIds in folder: /Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties/2022
28 Apr 2025 10:30:13,850 INFO : Done importing folder archive for 2022
28 Apr 2025 10:30:13,881 INFO : New folder created with inherited permissions: /Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties/2023
28 Apr 2025 10:30:13,881 INFO : Loading folder archive for 2023
28 Apr 2025 10:30:13,882 INFO : Loading folder properties (folder type, settings and active modules)
28 Apr 2025 10:30:13,913 INFO : Done importing folder properties (folder type, settings and active modules)
28 Apr 2025 10:30:13,914 INFO : Loading container specific module properties
28 Apr 2025 10:30:13,918 INFO : Done importing container specific module properties
28 Apr 2025 10:30:13,919 INFO : Loading queries
28 Apr 2025 10:30:13,922 INFO : 1 query imported
28 Apr 2025 10:30:13,922 INFO : Done importing queries
28 Apr 2025 10:30:13,922 INFO : Loading etl definitions
28 Apr 2025 10:30:13,923 INFO : Loading wikis
28 Apr 2025 10:30:13,924 INFO : 0 wikis imported
28 Apr 2025 10:30:13,924 INFO : Done importing wikis
28 Apr 2025 10:30:13,925 INFO : Starting Data Class Importer
28 Apr 2025 10:30:13,925 INFO : No types XAR file to process.
28 Apr 2025 10:30:13,926 INFO : Finished Data Class Importer
28 Apr 2025 10:30:13,926 INFO : Starting to copy files to @files
28 Apr 2025 10:30:13,926 INFO : Copied 0 files to @files
28 Apr 2025 10:30:13,927 INFO : Starting to copy files to @assayfiles
28 Apr 2025 10:30:13,927 INFO : Copied 0 files to @assayfiles
28 Apr 2025 10:30:13,927 INFO : Ensuring exp.data rows exist for imported files
28 Apr 2025 10:30:13,930 INFO : Starting Sample Type Importer
28 Apr 2025 10:30:13,930 INFO : No types XAR file to process.
28 Apr 2025 10:30:13,930 INFO : Finished Sample Type Importer
28 Apr 2025 10:30:13,930 INFO : Loading xar
28 Apr 2025 10:30:14,661 INFO : Starting import from ATI_Response_2023_2025-04-26_13-25-06.sky.zip
28 Apr 2025 10:30:14,663 INFO : Starting to import Skyline document from ATI_Response_2023_2025-04-26_13-25-06.sky.zip
28 Apr 2025 10:30:14,663 INFO : Expanding ATI_Response_2023.skyd
28 Apr 2025 10:30:14,798 INFO : Expanding ATI_Response_2023.sky
28 Apr 2025 10:30:14,807 INFO : Reading Skyline file, ATI_Response_2023.sky, to determine if the TransitionChromInfos in the document should be stored...
28 Apr 2025 10:30:14,815 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
28 Apr 2025 10:30:14,817 INFO : 1% Done
28 Apr 2025 10:30:14,817 INFO : Copying SKYD to temp directory for import purposes
28 Apr 2025 10:30:14,846 INFO : Copying complete
28 Apr 2025 10:30:15,003 INFO : Inserting 0.28 sp|P01083|IAA2_WHEAT
28 Apr 2025 10:30:15,008 INFO : 5% Done
28 Apr 2025 10:30:15,048 INFO : 10% Done
28 Apr 2025 10:30:15,084 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT
28 Apr 2025 10:30:15,088 INFO : 14% Done
28 Apr 2025 10:30:15,124 INFO : 18% Done
28 Apr 2025 10:30:15,159 INFO : 23% Done
28 Apr 2025 10:30:15,192 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT, NEU
28 Apr 2025 10:30:15,196 INFO : 26% Done
28 Apr 2025 10:30:15,230 INFO : Inserting 0.53 sp|P01084|IAA5_WHEAT
28 Apr 2025 10:30:15,233 INFO : 30% Done
28 Apr 2025 10:30:15,267 INFO : Inserting CM1 sp|P16850|IAAC1_WHEAT
28 Apr 2025 10:30:15,270 INFO : 33% Done
28 Apr 2025 10:30:15,296 INFO : Inserting CM2 sp|P16851|IAAC2_WHEAT
28 Apr 2025 10:30:15,299 INFO : 36% Done
28 Apr 2025 10:30:15,331 INFO : 40% Done
28 Apr 2025 10:30:15,365 INFO : Inserting CM3 sp|P17314|IAAC3_WHEAT
28 Apr 2025 10:30:15,368 INFO : 44% Done
28 Apr 2025 10:30:15,403 INFO : 49% Done
28 Apr 2025 10:30:15,437 INFO : Inserting CM16 sp|P16159|IAC16_WHEAT
28 Apr 2025 10:30:15,441 INFO : 52% Done
28 Apr 2025 10:30:15,473 INFO : 57% Done
28 Apr 2025 10:30:15,508 INFO : 61% Done
28 Apr 2025 10:30:15,542 INFO : Inserting CM17 tr|Q41540|Q41540_WHEAT
28 Apr 2025 10:30:15,546 INFO : 65% Done
28 Apr 2025 10:30:15,581 INFO : Inserting WASI sp|P16347|IAAS_WHEAT
28 Apr 2025 10:30:15,584 INFO : 69% Done
28 Apr 2025 10:30:15,615 INFO : 73% Done
28 Apr 2025 10:30:15,649 INFO : Inserting CMX1/3 sp|Q43723|IACX1_WHEAT
28 Apr 2025 10:30:15,653 INFO : 77% Done
28 Apr 2025 10:30:15,688 INFO : 81% Done
28 Apr 2025 10:30:15,721 INFO : Inserting WCI sp|P83207|ICIW2_WHEAT
28 Apr 2025 10:30:15,725 INFO : 85% Done
28 Apr 2025 10:30:15,760 INFO : 90% Done
28 Apr 2025 10:30:15,794 INFO : Inserting sp|P-----|IBB3_WHEAT
28 Apr 2025 10:30:15,797 INFO : 94% Done
28 Apr 2025 10:30:15,832 INFO : 98% Done
28 Apr 2025 10:30:15,870 INFO : Done parsing Skyline document.
28 Apr 2025 10:30:15,871 INFO : Creating and populating temp tables for Proportion values
28 Apr 2025 10:30:15,879 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
28 Apr 2025 10:30:15,905 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
28 Apr 2025 10:30:15,914 INFO : Cleaning up temp tables
28 Apr 2025 10:30:16,190 INFO : Deleted temp copy of SKYD file
28 Apr 2025 10:30:16,190 INFO : Completed import of Skyline document from ATI_Response_2023_2025-04-26_13-25-06.sky.zip
28 Apr 2025 10:30:16,192 INFO : 100% Done
28 Apr 2025 10:30:16,199 INFO : Starting import from ATI_Samples_2023_2025-04-26_13-39-03.sky.zip
28 Apr 2025 10:30:16,200 INFO : Starting to import Skyline document from ATI_Samples_2023_2025-04-26_13-39-03.sky.zip
28 Apr 2025 10:30:16,201 INFO : Expanding ATI_Samples_2023.skyd
28 Apr 2025 10:30:16,515 INFO : Expanding ATI_Samples_2023.sky.view
28 Apr 2025 10:30:16,515 INFO : Expanding ATI_Samples_2023.sky
28 Apr 2025 10:30:16,534 INFO : Reading Skyline file, ATI_Samples_2023.sky, to determine if the TransitionChromInfos in the document should be stored...
28 Apr 2025 10:30:16,569 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
28 Apr 2025 10:30:16,572 INFO : 1% Done
28 Apr 2025 10:30:16,572 INFO : Copying SKYD to temp directory for import purposes
28 Apr 2025 10:30:16,644 INFO : Copying complete
28 Apr 2025 10:30:16,830 INFO : Inserting 0.28 sp|P01083|IAA2_WHEAT
28 Apr 2025 10:30:16,837 INFO : 5% Done
28 Apr 2025 10:30:16,934 INFO : 9% Done
28 Apr 2025 10:30:17,027 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT
28 Apr 2025 10:30:17,033 INFO : 14% Done
28 Apr 2025 10:30:17,129 INFO : 18% Done
28 Apr 2025 10:30:17,221 INFO : 22% Done
28 Apr 2025 10:30:17,310 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT, NEU
28 Apr 2025 10:30:17,316 INFO : 25% Done
28 Apr 2025 10:30:17,407 INFO : Inserting 0.53 sp|P01084|IAA5_WHEAT
28 Apr 2025 10:30:17,413 INFO : 30% Done
28 Apr 2025 10:30:17,503 INFO : Inserting CM1 sp|P16850|IAAC1_WHEAT
28 Apr 2025 10:30:17,508 INFO : 33% Done
28 Apr 2025 10:30:17,578 INFO : Inserting CM2 sp|P16851|IAAC2_WHEAT
28 Apr 2025 10:30:17,583 INFO : 36% Done
28 Apr 2025 10:30:17,665 INFO : 41% Done
28 Apr 2025 10:30:17,748 INFO : Inserting CM3 sp|P17314|IAAC3_WHEAT
28 Apr 2025 10:30:17,754 INFO : 45% Done
28 Apr 2025 10:30:17,837 INFO : 49% Done
28 Apr 2025 10:30:17,919 INFO : Inserting CM16 sp|P16159|IAC16_WHEAT
28 Apr 2025 10:30:17,925 INFO : 53% Done
28 Apr 2025 10:30:17,996 INFO : 57% Done
28 Apr 2025 10:30:18,082 INFO : 62% Done
28 Apr 2025 10:30:18,168 INFO : Inserting CM17 tr|Q41540|Q41540_WHEAT
28 Apr 2025 10:30:18,173 INFO : 66% Done
28 Apr 2025 10:30:18,258 INFO : Inserting WASI sp|P16347|IAAS_WHEAT
28 Apr 2025 10:30:18,263 INFO : 69% Done
28 Apr 2025 10:30:18,341 INFO : 74% Done
28 Apr 2025 10:30:18,431 INFO : Inserting CMX1/3 sp|Q43723|IACX1_WHEAT
28 Apr 2025 10:30:18,437 INFO : 77% Done
28 Apr 2025 10:30:18,531 INFO : 81% Done
28 Apr 2025 10:30:18,611 INFO : Inserting WCI sp|P83207|ICIW2_WHEAT
28 Apr 2025 10:30:18,617 INFO : 85% Done
28 Apr 2025 10:30:18,697 INFO : 90% Done
28 Apr 2025 10:30:18,782 INFO : Inserting sp|P-----|IBB3_WHEAT
28 Apr 2025 10:30:18,787 INFO : 94% Done
28 Apr 2025 10:30:18,868 INFO : 98% Done
28 Apr 2025 10:30:18,947 INFO : Done parsing Skyline document.
28 Apr 2025 10:30:18,948 INFO : Creating and populating temp tables for Proportion values
28 Apr 2025 10:30:18,956 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
28 Apr 2025 10:30:19,018 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
28 Apr 2025 10:30:19,039 INFO : Cleaning up temp tables
28 Apr 2025 10:30:19,317 INFO : Deleted temp copy of SKYD file
28 Apr 2025 10:30:19,317 INFO : Completed import of Skyline document from ATI_Samples_2023_2025-04-26_13-39-03.sky.zip
28 Apr 2025 10:30:19,319 INFO : 100% Done
28 Apr 2025 10:30:19,697 INFO : Done importing xar
28 Apr 2025 10:30:19,698 INFO : Loading pages and webpart properties
28 Apr 2025 10:30:19,742 INFO : Done importing 3 page(s) with 4 webpart(s)
28 Apr 2025 10:30:19,742 INFO : Loading File Browser config
28 Apr 2025 10:30:19,742 INFO : Done importing File Browser config
28 Apr 2025 10:30:19,743 INFO : Starting Sample Status Data import
28 Apr 2025 10:30:19,743 INFO : No sample types XAR file to process.
28 Apr 2025 10:30:19,743 INFO : Finished importing Sample Status Data
28 Apr 2025 10:30:19,746 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
28 Apr 2025 10:30:19,748 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
28 Apr 2025 10:30:19,748 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
28 Apr 2025 10:30:19,748 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
28 Apr 2025 10:30:19,748 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
28 Apr 2025 10:30:19,749 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
28 Apr 2025 10:30:19,749 INFO : Moving files to folder /Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties/2023 and creating symlinks
28 Apr 2025 10:30:19,868 INFO : Aligning data files urls in folder: /Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties/2023
28 Apr 2025 10:30:19,876 INFO : Updating skydDataIds in folder: /Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties/2023
28 Apr 2025 10:30:19,878 INFO : Done importing folder archive for 2023
28 Apr 2025 10:30:19,878 INFO : Done importing subfolders and container tabs
28 Apr 2025 10:30:19,879 INFO : Moving files to folder /Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties and creating symlinks
28 Apr 2025 10:30:19,887 INFO : Aligning data files urls in folder: /Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties
28 Apr 2025 10:30:19,888 INFO : Updating skydDataIds in folder: /Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties
28 Apr 2025 10:30:19,888 INFO : Importing files metadata.
28 Apr 2025 10:30:19,891 INFO :
28 Apr 2025 10:30:19,891 INFO : Experiment import completed successfully.
28 Apr 2025 10:30:19,891 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
28 Apr 2025 10:30:19,908 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
28 Apr 2025 10:30:19,908 INFO :
28 Apr 2025 10:30:19,908 INFO : Checking for library folders.
28 Apr 2025 10:30:19,911 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
28 Apr 2025 10:30:19,924 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
28 Apr 2025 10:30:19,924 INFO :
28 Apr 2025 10:30:19,924 INFO : Finishing up experiment copy.
28 Apr 2025 10:30:19,925 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2025/KIT Food Chemistry - ATIs in landraces of different wheat varieties
28 Apr 2025 10:30:19,926 INFO : Setting version on new experiment to 1
28 Apr 2025 10:30:19,928 INFO : Updating permanent link to point to the new copy of the data.
28 Apr 2025 10:30:19,950 INFO : Removing copy permissions given to Panorama Public
28 Apr 2025 10:30:19,955 INFO : Adding read permissions to all users that are folder admins in the source folder.
28 Apr 2025 10:30:19,955 INFO : Assigning ReaderRole to s.geisslitz.leibniz-lsb@tum.de
28 Apr 2025 10:30:19,956 INFO : Assigning ReaderRole to nora.jahn@kit.edu
28 Apr 2025 10:30:19,956 INFO : Assigning ReaderRole to sabrina.geisslitz@kit.edu
28 Apr 2025 10:30:19,956 INFO : Assigning ReaderRole to katharina.scherf@kit.edu
28 Apr 2025 10:30:19,956 INFO : Assigning ReaderRole to k.scherf.leibniz-lsb@tum.de
28 Apr 2025 10:30:19,956 INFO : Assigning PanoramaPublicSubmitterRole to nora.jahn@kit.edu
28 Apr 2025 10:30:19,956 INFO : Assigning PanoramaPublicSubmitterRole to k.scherf.leibniz-lsb@tum.de
28 Apr 2025 10:30:19,962 INFO : User nora.jahn@kit.edu is already a member of group Panorama Public Submitters
28 Apr 2025 10:30:19,962 INFO : User k.scherf.leibniz-lsb@tum.de is already a member of group Panorama Public Submitters
28 Apr 2025 10:30:19,962 INFO : Updating the 'Raw Data' tab configuration
28 Apr 2025 10:30:19,963 INFO : Making folder public.
28 Apr 2025 10:30:19,965 INFO : Hiding the Data Pipeline tab.
28 Apr 2025 10:30:19,975 INFO : Updating Submission. Setting copiedExperimentId to 2061
28 Apr 2025 10:30:22,514 INFO : Assigning a ProteomeXchange ID.
28 Apr 2025 10:30:23,467 INFO : Assigned ProteomeXchange ID: PXD063405
28 Apr 2025 10:30:23,467 INFO : Assigning a DOI.
28 Apr 2025 10:30:24,203 INFO : Assigned DOI: 10.6069/epnw-8563
28 Apr 2025 10:30:24,241 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'