Copying experiment: Amylase/trypsin-inhibitor content and inhibitory activity of German common wheat landraces and modern varieties do not differ

KIT Food Chemistry - ATI in common wheat landraces

Job Status

Created: 2025-02-05 14:48:13
Modified: 2025-02-05 14:48:45
Email: vsharma@uw.edu
Status: COMPLETE
Info:
Description: Copying experiment: Amylase/trypsin-inhibitor content and inhibitory activity of German common wheat landraces and modern varieties do not differ
File Path: /data/labkey/files/Panorama Public/2025/KIT Food Chemistry - ATI in common wheat landraces/@files/Experiment_2027.log
Files: Experiment_2027.log
Completed Runs: ATI_Samples_2023_2024-11-11_15-27-53.sky.zip
ATI_Samples_2021_2024-11-11_10-31-18.sky.zip
ATI_Samples_2022_2024-11-11_11-28-17.sky.zip
ATI_Response_2023_2024-11-11_15-38-36.sky.zip

Log File


05 Feb 2025 14:48:13,546 INFO : Copying experiment "Amylase/trypsin-inhibitor content and inhibitory activity of German common wheat landraces and modern varieties do not differ" from folder /KIT - Food Chemistry/ATI in common wheat landraces to /Panorama Public/2025/KIT Food Chemistry - ATI in common wheat landraces
05 Feb 2025 14:48:13,546 INFO : =======================================
05 Feb 2025 14:48:13,579 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask' at location 'webserver-high-priority'
05 Feb 2025 14:48:13,579 INFO :
05 Feb 2025 14:48:13,579 INFO : Exporting experiment.
05 Feb 2025 14:48:21,596 INFO : Exporting files metadata.
05 Feb 2025 14:48:21,697 INFO :
05 Feb 2025 14:48:21,697 INFO : Experiment export completed successfully.
05 Feb 2025 14:48:21,697 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentExportTask'
05 Feb 2025 14:48:21,713 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask' at location 'webserver-high-priority'
05 Feb 2025 14:48:21,713 INFO :
05 Feb 2025 14:48:21,713 INFO : Importing experiment.
05 Feb 2025 14:48:21,715 INFO : Loading folder properties (folder type, settings and active modules)
05 Feb 2025 14:48:21,747 INFO : Done importing folder properties (folder type, settings and active modules)
05 Feb 2025 14:48:21,748 INFO : Loading container specific module properties
05 Feb 2025 14:48:21,754 INFO : Done importing container specific module properties
05 Feb 2025 14:48:21,755 INFO : Loading queries
05 Feb 2025 14:48:21,757 INFO : 1 query imported
05 Feb 2025 14:48:21,757 INFO : Done importing queries
05 Feb 2025 14:48:21,758 INFO : Loading etl definitions
05 Feb 2025 14:48:21,758 INFO : Loading wikis
05 Feb 2025 14:48:21,760 INFO : 0 wikis imported
05 Feb 2025 14:48:21,760 INFO : Done importing wikis
05 Feb 2025 14:48:21,762 INFO : Starting Data Class Importer
05 Feb 2025 14:48:21,763 INFO : No types XAR file to process.
05 Feb 2025 14:48:21,763 INFO : Finished Data Class Importer
05 Feb 2025 14:48:21,763 INFO : Starting to copy files to @files
05 Feb 2025 14:48:21,763 INFO : Copied 0 files to @files
05 Feb 2025 14:48:21,764 INFO : Starting to copy files to @assayfiles
05 Feb 2025 14:48:21,764 INFO : Copied 0 files to @assayfiles
05 Feb 2025 14:48:21,764 INFO : Ensuring exp.data rows exist for imported files
05 Feb 2025 14:48:21,939 INFO : Loading lists
05 Feb 2025 14:48:21,945 INFO : Recreating list: Samples 2023
05 Feb 2025 14:48:22,016 INFO : Recreating list: Samples 2021
05 Feb 2025 14:48:22,053 INFO : Recreating list: Samples 2022
05 Feb 2025 14:48:22,137 INFO : Merged 20 row(s) into list: Samples 2023
05 Feb 2025 14:48:22,159 INFO : Merged 19 row(s) into list: Samples 2021
05 Feb 2025 14:48:22,167 INFO : Merged 20 row(s) into list: Samples 2022
05 Feb 2025 14:48:22,168 INFO : 3 lists imported successfully
05 Feb 2025 14:48:22,168 INFO : Done importing lists
05 Feb 2025 14:48:22,171 INFO : Starting Sample Type Importer
05 Feb 2025 14:48:22,171 INFO : No types XAR file to process.
05 Feb 2025 14:48:22,171 INFO : Finished Sample Type Importer
05 Feb 2025 14:48:22,172 INFO : Loading xar
05 Feb 2025 14:48:22,199 INFO : Done importing xar
05 Feb 2025 14:48:22,200 INFO : Loading pages and webpart properties
05 Feb 2025 14:48:22,245 INFO : Done importing 3 page(s) with 5 webpart(s)
05 Feb 2025 14:48:22,245 INFO : Loading File Browser config
05 Feb 2025 14:48:22,245 INFO : Done importing File Browser config
05 Feb 2025 14:48:22,246 INFO : Starting Sample Status Data import
05 Feb 2025 14:48:22,246 INFO : No sample types XAR file to process.
05 Feb 2025 14:48:22,246 INFO : Finished importing Sample Status Data
05 Feb 2025 14:48:22,250 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
05 Feb 2025 14:48:22,253 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
05 Feb 2025 14:48:22,254 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
05 Feb 2025 14:48:22,254 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
05 Feb 2025 14:48:22,254 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
05 Feb 2025 14:48:22,254 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
05 Feb 2025 14:48:22,255 INFO : Loading subfolders and container tabs
05 Feb 2025 14:48:22,294 INFO : New folder created with inherited permissions: /Panorama Public/2025/KIT Food Chemistry - ATI in common wheat landraces/2021
05 Feb 2025 14:48:22,295 INFO : Loading folder archive for 2021
05 Feb 2025 14:48:22,296 INFO : Loading folder properties (folder type, settings and active modules)
05 Feb 2025 14:48:22,325 INFO : Done importing folder properties (folder type, settings and active modules)
05 Feb 2025 14:48:22,326 INFO : Loading container specific module properties
05 Feb 2025 14:48:22,334 INFO : Done importing container specific module properties
05 Feb 2025 14:48:22,335 INFO : Loading queries
05 Feb 2025 14:48:22,341 INFO : 1 query imported
05 Feb 2025 14:48:22,342 INFO : Done importing queries
05 Feb 2025 14:48:22,343 INFO : Loading etl definitions
05 Feb 2025 14:48:22,344 INFO : Loading wikis
05 Feb 2025 14:48:22,345 INFO : 0 wikis imported
05 Feb 2025 14:48:22,346 INFO : Done importing wikis
05 Feb 2025 14:48:22,347 INFO : Starting Data Class Importer
05 Feb 2025 14:48:22,348 INFO : No types XAR file to process.
05 Feb 2025 14:48:22,348 INFO : Finished Data Class Importer
05 Feb 2025 14:48:22,349 INFO : Starting to copy files to @files
05 Feb 2025 14:48:22,349 INFO : Copied 0 files to @files
05 Feb 2025 14:48:22,350 INFO : Starting to copy files to @assayfiles
05 Feb 2025 14:48:22,350 INFO : Copied 0 files to @assayfiles
05 Feb 2025 14:48:22,350 INFO : Ensuring exp.data rows exist for imported files
05 Feb 2025 14:48:22,354 INFO : Starting Sample Type Importer
05 Feb 2025 14:48:22,354 INFO : No types XAR file to process.
05 Feb 2025 14:48:22,354 INFO : Finished Sample Type Importer
05 Feb 2025 14:48:22,355 INFO : Loading xar
05 Feb 2025 14:48:22,606 INFO : Starting import from ATI_Samples_2021_2024-11-11_10-31-18.sky.zip
05 Feb 2025 14:48:22,609 INFO : Starting to import Skyline document from ATI_Samples_2021_2024-11-11_10-31-18.sky.zip
05 Feb 2025 14:48:22,610 INFO : Expanding ATI_Samples_2021.skyd
05 Feb 2025 14:48:22,730 INFO : Expanding ATI_Samples_2021.sky.view
05 Feb 2025 14:48:22,731 INFO : Expanding ATI_Samples_2021.sky
05 Feb 2025 14:48:22,750 INFO : Reading Skyline file, ATI_Samples_2021.sky, to determine if the TransitionChromInfos in the document should be stored...
05 Feb 2025 14:48:22,784 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
05 Feb 2025 14:48:22,786 INFO : 1% Done
05 Feb 2025 14:48:23,503 INFO : Inserting 0.28 sp|P01083|IAA2_WHEAT
05 Feb 2025 14:48:23,525 INFO : 5% Done
05 Feb 2025 14:48:23,667 INFO : 10% Done
05 Feb 2025 14:48:23,780 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT
05 Feb 2025 14:48:23,800 INFO : 14% Done
05 Feb 2025 14:48:24,027 INFO : 19% Done
05 Feb 2025 14:48:24,172 INFO : 23% Done
05 Feb 2025 14:48:24,298 INFO : Inserting 0.53 sp|P01084|IAA5_WHEAT
05 Feb 2025 14:48:24,317 INFO : 27% Done
05 Feb 2025 14:48:24,443 INFO : Inserting CM1 sp|P16850|IAAC1_WHEAT
05 Feb 2025 14:48:24,455 INFO : 30% Done
05 Feb 2025 14:48:24,553 INFO : Inserting CM2 sp|P16851|IAAC2_WHEAT
05 Feb 2025 14:48:24,572 INFO : 34% Done
05 Feb 2025 14:48:24,704 INFO : 39% Done
05 Feb 2025 14:48:24,816 INFO : Inserting CM3 sp|P17314|IAAC3_WHEAT
05 Feb 2025 14:48:24,835 INFO : 43% Done
05 Feb 2025 14:48:24,963 INFO : 47% Done
05 Feb 2025 14:48:25,080 INFO : 48% Done
05 Feb 2025 14:48:25,080 INFO : Inserting CM16 sp|P16159|IAC16_WHEAT
05 Feb 2025 14:48:25,095 INFO : 51% Done
05 Feb 2025 14:48:25,226 INFO : 56% Done
05 Feb 2025 14:48:25,367 INFO : 60% Done
05 Feb 2025 14:48:25,482 INFO : Inserting CM17 tr|Q41540|Q41540_WHEAT
05 Feb 2025 14:48:25,502 INFO : 65% Done
05 Feb 2025 14:48:25,615 INFO : Inserting WASI sp|P16347|IAAS_WHEAT
05 Feb 2025 14:48:25,630 INFO : 68% Done
05 Feb 2025 14:48:25,745 INFO : 73% Done
05 Feb 2025 14:48:25,859 INFO : Inserting CMX1/3 sp|Q43723|IACX1_WHEAT
05 Feb 2025 14:48:25,917 INFO : 76% Done
05 Feb 2025 14:48:26,049 INFO : 80% Done
05 Feb 2025 14:48:26,171 INFO : Inserting WCI sp|P83207|ICIW2_WHEAT
05 Feb 2025 14:48:26,192 INFO : 85% Done
05 Feb 2025 14:48:26,331 INFO : 89% Done
05 Feb 2025 14:48:26,451 INFO : Inserting sp|P-----|IBB3_WHEAT
05 Feb 2025 14:48:26,472 INFO : 94% Done
05 Feb 2025 14:48:26,624 INFO : 98% Done
05 Feb 2025 14:48:26,746 INFO : Done parsing Skyline document.
05 Feb 2025 14:48:26,747 INFO : Creating and populating temp tables for Proportion values
05 Feb 2025 14:48:26,756 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Feb 2025 14:48:26,837 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Feb 2025 14:48:26,865 INFO : Cleaning up temp tables
05 Feb 2025 14:48:27,120 INFO : Completed import of Skyline document from ATI_Samples_2021_2024-11-11_10-31-18.sky.zip
05 Feb 2025 14:48:27,122 INFO : 100% Done
05 Feb 2025 14:48:27,365 INFO : Done importing xar
05 Feb 2025 14:48:27,366 INFO : Loading pages and webpart properties
05 Feb 2025 14:48:27,411 INFO : Done importing 3 page(s) with 4 webpart(s)
05 Feb 2025 14:48:27,411 INFO : Loading File Browser config
05 Feb 2025 14:48:27,411 INFO : Done importing File Browser config
05 Feb 2025 14:48:27,412 INFO : Starting Sample Status Data import
05 Feb 2025 14:48:27,412 INFO : No sample types XAR file to process.
05 Feb 2025 14:48:27,412 INFO : Finished importing Sample Status Data
05 Feb 2025 14:48:27,416 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
05 Feb 2025 14:48:27,417 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
05 Feb 2025 14:48:27,418 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
05 Feb 2025 14:48:27,418 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
05 Feb 2025 14:48:27,418 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
05 Feb 2025 14:48:27,419 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
05 Feb 2025 14:48:27,420 INFO : Creating a new TargetedMS experiment entry in panoramapublic.ExperimentAnnotations.
05 Feb 2025 14:48:27,424 INFO : Adding runs imported in subfolders.
05 Feb 2025 14:48:27,432 INFO : Moving files to folder /Panorama Public/2025/KIT Food Chemistry - ATI in common wheat landraces/2021 and creating symlinks
05 Feb 2025 14:48:27,693 INFO : Aligning data files urls in folder: /Panorama Public/2025/KIT Food Chemistry - ATI in common wheat landraces/2021
05 Feb 2025 14:48:27,698 INFO : Done importing folder archive for 2021
05 Feb 2025 14:48:27,727 INFO : New folder created with inherited permissions: /Panorama Public/2025/KIT Food Chemistry - ATI in common wheat landraces/2022
05 Feb 2025 14:48:27,727 INFO : Loading folder archive for 2022
05 Feb 2025 14:48:27,728 INFO : Loading folder properties (folder type, settings and active modules)
05 Feb 2025 14:48:27,757 INFO : Done importing folder properties (folder type, settings and active modules)
05 Feb 2025 14:48:27,758 INFO : Loading container specific module properties
05 Feb 2025 14:48:27,762 INFO : Done importing container specific module properties
05 Feb 2025 14:48:27,763 INFO : Loading queries
05 Feb 2025 14:48:27,765 INFO : 1 query imported
05 Feb 2025 14:48:27,765 INFO : Done importing queries
05 Feb 2025 14:48:27,766 INFO : Loading etl definitions
05 Feb 2025 14:48:27,767 INFO : Loading wikis
05 Feb 2025 14:48:27,768 INFO : 0 wikis imported
05 Feb 2025 14:48:27,768 INFO : Done importing wikis
05 Feb 2025 14:48:27,769 INFO : Starting Data Class Importer
05 Feb 2025 14:48:27,769 INFO : No types XAR file to process.
05 Feb 2025 14:48:27,769 INFO : Finished Data Class Importer
05 Feb 2025 14:48:27,770 INFO : Starting to copy files to @files
05 Feb 2025 14:48:27,770 INFO : Copied 0 files to @files
05 Feb 2025 14:48:27,771 INFO : Starting to copy files to @assayfiles
05 Feb 2025 14:48:27,771 INFO : Copied 0 files to @assayfiles
05 Feb 2025 14:48:27,771 INFO : Ensuring exp.data rows exist for imported files
05 Feb 2025 14:48:27,774 INFO : Starting Sample Type Importer
05 Feb 2025 14:48:27,774 INFO : No types XAR file to process.
05 Feb 2025 14:48:27,774 INFO : Finished Sample Type Importer
05 Feb 2025 14:48:27,775 INFO : Loading xar
05 Feb 2025 14:48:27,991 INFO : Starting import from ATI_Samples_2022_2024-11-11_11-28-17.sky.zip
05 Feb 2025 14:48:27,993 INFO : Starting to import Skyline document from ATI_Samples_2022_2024-11-11_11-28-17.sky.zip
05 Feb 2025 14:48:27,995 INFO : Expanding ATI_Samples_2022.skyd
05 Feb 2025 14:48:28,095 INFO : Expanding ATI_Samples_2022.sky.view
05 Feb 2025 14:48:28,096 INFO : Expanding ATI_Samples_2022.sky
05 Feb 2025 14:48:28,118 INFO : Reading Skyline file, ATI_Samples_2022.sky, to determine if the TransitionChromInfos in the document should be stored...
05 Feb 2025 14:48:28,183 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
05 Feb 2025 14:48:28,185 INFO : 1% Done
05 Feb 2025 14:48:28,551 INFO : Inserting 0.28 sp|P01083|IAA2_WHEAT
05 Feb 2025 14:48:28,573 INFO : 5% Done
05 Feb 2025 14:48:28,754 INFO : 10% Done
05 Feb 2025 14:48:28,912 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT
05 Feb 2025 14:48:28,937 INFO : 14% Done
05 Feb 2025 14:48:29,117 INFO : 19% Done
05 Feb 2025 14:48:29,286 INFO : 23% Done
05 Feb 2025 14:48:29,436 INFO : Inserting 0.53 sp|P01084|IAA5_WHEAT
05 Feb 2025 14:48:29,457 INFO : 26% Done
05 Feb 2025 14:48:29,606 INFO : Inserting CM1 sp|P16850|IAAC1_WHEAT
05 Feb 2025 14:48:29,619 INFO : 30% Done
05 Feb 2025 14:48:29,729 INFO : Inserting CM2 sp|P16851|IAAC2_WHEAT
05 Feb 2025 14:48:29,750 INFO : 34% Done
05 Feb 2025 14:48:29,885 INFO : 39% Done
05 Feb 2025 14:48:30,035 INFO : Inserting CM3 sp|P17314|IAAC3_WHEAT
05 Feb 2025 14:48:30,056 INFO : 43% Done
05 Feb 2025 14:48:30,225 INFO : 48% Done
05 Feb 2025 14:48:30,375 INFO : Inserting CM16 sp|P16159|IAC16_WHEAT
05 Feb 2025 14:48:30,392 INFO : 51% Done
05 Feb 2025 14:48:30,542 INFO : 56% Done
05 Feb 2025 14:48:30,711 INFO : 60% Done
05 Feb 2025 14:48:30,861 INFO : Inserting CM17 tr|Q41540|Q41540_WHEAT
05 Feb 2025 14:48:30,882 INFO : 65% Done
05 Feb 2025 14:48:31,032 INFO : Inserting WASI sp|P16347|IAAS_WHEAT
05 Feb 2025 14:48:31,048 INFO : 68% Done
05 Feb 2025 14:48:31,198 INFO : 73% Done
05 Feb 2025 14:48:31,350 INFO : Inserting CMX1/3 sp|Q43723|IACX1_WHEAT
05 Feb 2025 14:48:31,371 INFO : 76% Done
05 Feb 2025 14:48:31,543 INFO : 81% Done
05 Feb 2025 14:48:31,692 INFO : Inserting WCI sp|P83207|ICIW2_WHEAT
05 Feb 2025 14:48:31,714 INFO : 85% Done
05 Feb 2025 14:48:31,882 INFO : 89% Done
05 Feb 2025 14:48:32,031 INFO : Inserting sp|P-----|IBB3_WHEAT
05 Feb 2025 14:48:32,051 INFO : 94% Done
05 Feb 2025 14:48:32,220 INFO : 98% Done
05 Feb 2025 14:48:32,353 INFO : Done parsing Skyline document.
05 Feb 2025 14:48:32,353 INFO : Creating and populating temp tables for Proportion values
05 Feb 2025 14:48:32,361 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Feb 2025 14:48:32,454 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Feb 2025 14:48:32,488 INFO : Cleaning up temp tables
05 Feb 2025 14:48:32,725 INFO : Completed import of Skyline document from ATI_Samples_2022_2024-11-11_11-28-17.sky.zip
05 Feb 2025 14:48:32,728 INFO : 100% Done
05 Feb 2025 14:48:32,925 INFO : Done importing xar
05 Feb 2025 14:48:32,926 INFO : Loading pages and webpart properties
05 Feb 2025 14:48:32,968 INFO : Done importing 3 page(s) with 4 webpart(s)
05 Feb 2025 14:48:32,968 INFO : Loading File Browser config
05 Feb 2025 14:48:32,968 INFO : Done importing File Browser config
05 Feb 2025 14:48:32,969 INFO : Starting Sample Status Data import
05 Feb 2025 14:48:32,969 INFO : No sample types XAR file to process.
05 Feb 2025 14:48:32,969 INFO : Finished importing Sample Status Data
05 Feb 2025 14:48:32,972 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
05 Feb 2025 14:48:32,974 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
05 Feb 2025 14:48:32,974 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
05 Feb 2025 14:48:32,974 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
05 Feb 2025 14:48:32,975 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
05 Feb 2025 14:48:32,975 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
05 Feb 2025 14:48:32,975 INFO : Moving files to folder /Panorama Public/2025/KIT Food Chemistry - ATI in common wheat landraces/2022 and creating symlinks
05 Feb 2025 14:48:33,170 INFO : Aligning data files urls in folder: /Panorama Public/2025/KIT Food Chemistry - ATI in common wheat landraces/2022
05 Feb 2025 14:48:33,174 INFO : Done importing folder archive for 2022
05 Feb 2025 14:48:33,204 INFO : New folder created with inherited permissions: /Panorama Public/2025/KIT Food Chemistry - ATI in common wheat landraces/2023
05 Feb 2025 14:48:33,204 INFO : Loading folder archive for 2023
05 Feb 2025 14:48:33,205 INFO : Loading folder properties (folder type, settings and active modules)
05 Feb 2025 14:48:33,233 INFO : Done importing folder properties (folder type, settings and active modules)
05 Feb 2025 14:48:33,234 INFO : Loading container specific module properties
05 Feb 2025 14:48:33,238 INFO : Done importing container specific module properties
05 Feb 2025 14:48:33,239 INFO : Loading queries
05 Feb 2025 14:48:33,242 INFO : 1 query imported
05 Feb 2025 14:48:33,242 INFO : Done importing queries
05 Feb 2025 14:48:33,242 INFO : Loading etl definitions
05 Feb 2025 14:48:33,243 INFO : Loading wikis
05 Feb 2025 14:48:33,244 INFO : 0 wikis imported
05 Feb 2025 14:48:33,244 INFO : Done importing wikis
05 Feb 2025 14:48:33,245 INFO : Starting Data Class Importer
05 Feb 2025 14:48:33,246 INFO : No types XAR file to process.
05 Feb 2025 14:48:33,246 INFO : Finished Data Class Importer
05 Feb 2025 14:48:33,246 INFO : Starting to copy files to @files
05 Feb 2025 14:48:33,247 INFO : Copied 0 files to @files
05 Feb 2025 14:48:33,247 INFO : Starting to copy files to @assayfiles
05 Feb 2025 14:48:33,247 INFO : Copied 0 files to @assayfiles
05 Feb 2025 14:48:33,247 INFO : Ensuring exp.data rows exist for imported files
05 Feb 2025 14:48:33,250 INFO : Starting Sample Type Importer
05 Feb 2025 14:48:33,250 INFO : No types XAR file to process.
05 Feb 2025 14:48:33,250 INFO : Finished Sample Type Importer
05 Feb 2025 14:48:33,251 INFO : Loading xar
05 Feb 2025 14:48:34,438 INFO : Starting import from ATI_Samples_2023_2024-11-11_15-27-53.sky.zip
05 Feb 2025 14:48:34,440 INFO : Starting to import Skyline document from ATI_Samples_2023_2024-11-11_15-27-53.sky.zip
05 Feb 2025 14:48:34,441 INFO : Expanding ATI_Samples_2023.skyd
05 Feb 2025 14:48:35,005 INFO : Expanding ATI_Samples_2023.sky.view
05 Feb 2025 14:48:35,005 INFO : Expanding ATI_Samples_2023.sky
05 Feb 2025 14:48:35,040 INFO : Reading Skyline file, ATI_Samples_2023.sky, to determine if the TransitionChromInfos in the document should be stored...
05 Feb 2025 14:48:35,096 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
05 Feb 2025 14:48:35,099 INFO : 1% Done
05 Feb 2025 14:48:35,488 INFO : Inserting 0.28 sp|P01083|IAA2_WHEAT
05 Feb 2025 14:48:35,511 INFO : 5% Done
05 Feb 2025 14:48:35,664 INFO : 10% Done
05 Feb 2025 14:48:35,794 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT
05 Feb 2025 14:48:35,816 INFO : 14% Done
05 Feb 2025 14:48:35,967 INFO : 19% Done
05 Feb 2025 14:48:36,096 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT, NEU
05 Feb 2025 14:48:36,117 INFO : 23% Done
05 Feb 2025 14:48:36,248 INFO : Inserting 0.53 sp|P01084|IAA5_WHEAT
05 Feb 2025 14:48:36,270 INFO : 27% Done
05 Feb 2025 14:48:36,402 INFO : Inserting CM1 sp|P16850|IAAC1_WHEAT
05 Feb 2025 14:48:36,415 INFO : 30% Done
05 Feb 2025 14:48:36,512 INFO : Inserting CM2 sp|P16851|IAAC2_WHEAT
05 Feb 2025 14:48:36,534 INFO : 34% Done
05 Feb 2025 14:48:36,667 INFO : 38% Done
05 Feb 2025 14:48:36,801 INFO : Inserting CM3 sp|P17314|IAAC3_WHEAT
05 Feb 2025 14:48:36,824 INFO : 43% Done
05 Feb 2025 14:48:36,974 INFO : 47% Done
05 Feb 2025 14:48:37,106 INFO : Inserting CM16 sp|P16159|IAC16_WHEAT
05 Feb 2025 14:48:37,123 INFO : 51% Done
05 Feb 2025 14:48:37,261 INFO : 55% Done
05 Feb 2025 14:48:37,414 INFO : 60% Done
05 Feb 2025 14:48:37,549 INFO : Inserting CM17 tr|Q41540|Q41540_WHEAT
05 Feb 2025 14:48:37,571 INFO : 64% Done
05 Feb 2025 14:48:37,701 INFO : Inserting WASI sp|P16347|IAAS_WHEAT
05 Feb 2025 14:48:37,718 INFO : 68% Done
05 Feb 2025 14:48:37,853 INFO : 73% Done
05 Feb 2025 14:48:37,982 INFO : Inserting CMX1/3 sp|Q43723|IACX1_WHEAT
05 Feb 2025 14:48:38,003 INFO : 76% Done
05 Feb 2025 14:48:38,158 INFO : 80% Done
05 Feb 2025 14:48:38,287 INFO : Inserting WCI sp|P83207|ICIW2_WHEAT
05 Feb 2025 14:48:38,309 INFO : 85% Done
05 Feb 2025 14:48:38,463 INFO : 89% Done
05 Feb 2025 14:48:38,596 INFO : Inserting sp|P-----|IBB3_WHEAT
05 Feb 2025 14:48:38,618 INFO : 94% Done
05 Feb 2025 14:48:38,772 INFO : 98% Done
05 Feb 2025 14:48:38,904 INFO : Done parsing Skyline document.
05 Feb 2025 14:48:38,905 INFO : Creating and populating temp tables for Proportion values
05 Feb 2025 14:48:38,915 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Feb 2025 14:48:39,008 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Feb 2025 14:48:39,043 INFO : Cleaning up temp tables
05 Feb 2025 14:48:39,282 INFO : Completed import of Skyline document from ATI_Samples_2023_2024-11-11_15-27-53.sky.zip
05 Feb 2025 14:48:39,284 INFO : 100% Done
05 Feb 2025 14:48:39,291 INFO : Starting import from ATI_Response_2023_2024-11-11_15-38-36.sky.zip
05 Feb 2025 14:48:39,292 INFO : Starting to import Skyline document from ATI_Response_2023_2024-11-11_15-38-36.sky.zip
05 Feb 2025 14:48:39,293 INFO : Expanding ATI_Response_2023.skyd
05 Feb 2025 14:48:39,426 INFO : Expanding ATI_Response_2023.sky.view
05 Feb 2025 14:48:39,426 INFO : Expanding ATI_Response_2023.sky
05 Feb 2025 14:48:39,434 INFO : Reading Skyline file, ATI_Response_2023.sky, to determine if the TransitionChromInfos in the document should be stored...
05 Feb 2025 14:48:39,442 INFO : TransitionChromInfo counts or precursor counts are within the allowed limits. TransitionChromInfos will be stored
05 Feb 2025 14:48:39,445 INFO : 1% Done
05 Feb 2025 14:48:39,675 INFO : Inserting 0.28 sp|P01083|IAA2_WHEAT
05 Feb 2025 14:48:39,683 INFO : 6% Done
05 Feb 2025 14:48:39,725 INFO : 10% Done
05 Feb 2025 14:48:39,757 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT
05 Feb 2025 14:48:39,765 INFO : 15% Done
05 Feb 2025 14:48:39,803 INFO : 20% Done
05 Feb 2025 14:48:39,842 INFO : 24% Done
05 Feb 2025 14:48:39,875 INFO : Inserting 0.19 sp|P01085|IAA1_WHEAT, NEU
05 Feb 2025 14:48:39,882 INFO : 28% Done
05 Feb 2025 14:48:39,915 INFO : Inserting 0.53 sp|P01084|IAA5_WHEAT
05 Feb 2025 14:48:39,921 INFO : 33% Done
05 Feb 2025 14:48:39,954 INFO : Inserting CM1 sp|P16850|IAAC1_WHEAT
05 Feb 2025 14:48:39,959 INFO : 36% Done
05 Feb 2025 14:48:39,984 INFO : Inserting CM3 sp|P17314|IAAC3_WHEAT
05 Feb 2025 14:48:39,991 INFO : 40% Done
05 Feb 2025 14:48:40,029 INFO : 45% Done
05 Feb 2025 14:48:40,062 INFO : Inserting CM16 sp|P16159|IAC16_WHEAT
05 Feb 2025 14:48:40,067 INFO : 49% Done
05 Feb 2025 14:48:40,102 INFO : 54% Done
05 Feb 2025 14:48:40,140 INFO : 58% Done
05 Feb 2025 14:48:40,174 INFO : Inserting CM17 tr|Q41540|Q41540_WHEAT
05 Feb 2025 14:48:40,181 INFO : 63% Done
05 Feb 2025 14:48:40,213 INFO : Inserting WASI sp|P16347|IAAS_WHEAT
05 Feb 2025 14:48:40,219 INFO : 67% Done
05 Feb 2025 14:48:40,254 INFO : 71% Done
05 Feb 2025 14:48:40,287 INFO : Inserting CMX1/3 sp|Q43723|IACX1_WHEAT
05 Feb 2025 14:48:40,294 INFO : 75% Done
05 Feb 2025 14:48:40,332 INFO : 80% Done
05 Feb 2025 14:48:40,365 INFO : Inserting WCI sp|P83207|ICIW2_WHEAT
05 Feb 2025 14:48:40,372 INFO : 84% Done
05 Feb 2025 14:48:40,410 INFO : 89% Done
05 Feb 2025 14:48:40,443 INFO : Inserting sp|P-----|IBB3_WHEAT
05 Feb 2025 14:48:40,449 INFO : 93% Done
05 Feb 2025 14:48:40,488 INFO : 98% Done
05 Feb 2025 14:48:40,521 INFO : Done parsing Skyline document.
05 Feb 2025 14:48:40,522 INFO : Creating and populating temp tables for Proportion values
05 Feb 2025 14:48:40,526 INFO : Setting PrecursorModifiedAreaProportion values on precursorchrominfo
05 Feb 2025 14:48:40,547 INFO : Setting ModifiedAreaProportion values on generalmoleculechrominfo
05 Feb 2025 14:48:40,555 INFO : Cleaning up temp tables
05 Feb 2025 14:48:40,777 INFO : Completed import of Skyline document from ATI_Response_2023_2024-11-11_15-38-36.sky.zip
05 Feb 2025 14:48:40,779 INFO : 100% Done
05 Feb 2025 14:48:41,246 INFO : Done importing xar
05 Feb 2025 14:48:41,247 INFO : Loading pages and webpart properties
05 Feb 2025 14:48:41,288 INFO : Done importing 3 page(s) with 4 webpart(s)
05 Feb 2025 14:48:41,289 INFO : Loading File Browser config
05 Feb 2025 14:48:41,289 INFO : Done importing File Browser config
05 Feb 2025 14:48:41,289 INFO : Starting Sample Status Data import
05 Feb 2025 14:48:41,289 INFO : No sample types XAR file to process.
05 Feb 2025 14:48:41,289 INFO : Finished importing Sample Status Data
05 Feb 2025 14:48:41,293 INFO : Starting data import from QCAnnotationType.tsv into targetedms.QCAnnotationType
05 Feb 2025 14:48:41,294 INFO : A row containing [Name: 'Reagent Change', Description: 'null', Color: '800000'] values already exists. Skipping
05 Feb 2025 14:48:41,295 INFO : A row containing [Name: 'Instrumentation Change', Description: 'null', Color: 'FF0000'] values already exists. Skipping
05 Feb 2025 14:48:41,295 INFO : A row containing [Name: 'Technician Change', Description: 'null', Color: '0000FF'] values already exists. Skipping
05 Feb 2025 14:48:41,295 INFO : A row containing [Name: 'Instrument Downtime', Description: 'null', Color: 'CCCC00'] values already exists. Skipping
05 Feb 2025 14:48:41,295 INFO : Finished importing 0 rows from QCAnnotationType.tsv into targetedms.QCAnnotationType
05 Feb 2025 14:48:41,296 INFO : Moving files to folder /Panorama Public/2025/KIT Food Chemistry - ATI in common wheat landraces/2023 and creating symlinks
05 Feb 2025 14:48:41,517 INFO : Aligning data files urls in folder: /Panorama Public/2025/KIT Food Chemistry - ATI in common wheat landraces/2023
05 Feb 2025 14:48:41,524 INFO : Done importing folder archive for 2023
05 Feb 2025 14:48:41,524 INFO : Done importing subfolders and container tabs
05 Feb 2025 14:48:41,525 INFO : Moving files to folder /Panorama Public/2025/KIT Food Chemistry - ATI in common wheat landraces and creating symlinks
05 Feb 2025 14:48:41,542 INFO : Aligning data files urls in folder: /Panorama Public/2025/KIT Food Chemistry - ATI in common wheat landraces
05 Feb 2025 14:48:41,543 INFO : Importing files metadata.
05 Feb 2025 14:48:41,547 INFO :
05 Feb 2025 14:48:41,547 INFO : Experiment import completed successfully.
05 Feb 2025 14:48:41,547 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.ExperimentImportTask'
05 Feb 2025 14:48:41,563 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask' at location 'webserver-high-priority'
05 Feb 2025 14:48:41,563 INFO :
05 Feb 2025 14:48:41,563 INFO : Checking for library folders.
05 Feb 2025 14:48:41,566 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyLibraryStateTask'
05 Feb 2025 14:48:41,580 INFO : Starting to run task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask' at location 'webserver-high-priority'
05 Feb 2025 14:48:41,580 INFO :
05 Feb 2025 14:48:41,580 INFO : Finishing up experiment copy.
05 Feb 2025 14:48:41,581 INFO : Updating TargetedMS experiment entry in target folder /Panorama Public/2025/KIT Food Chemistry - ATI in common wheat landraces
05 Feb 2025 14:48:41,582 INFO : Setting version on new experiment to 1
05 Feb 2025 14:48:41,585 INFO : Updating permanent link to point to the new copy of the data.
05 Feb 2025 14:48:41,602 INFO : Removing copy permissions given to Panorama Public
05 Feb 2025 14:48:41,609 INFO : Adding read permissions to all users that are folder admins in the source folder.
05 Feb 2025 14:48:41,609 INFO : Assigning ReaderRole to s.geisslitz.leibniz-lsb@tum.de
05 Feb 2025 14:48:41,609 INFO : Assigning ReaderRole to nora.jahn@kit.edu
05 Feb 2025 14:48:41,609 INFO : Assigning ReaderRole to sabrina.geisslitz@kit.edu
05 Feb 2025 14:48:41,609 INFO : Assigning ReaderRole to katharina.scherf@kit.edu
05 Feb 2025 14:48:41,609 INFO : Assigning ReaderRole to k.scherf.leibniz-lsb@tum.de
05 Feb 2025 14:48:41,609 INFO : Assigning PanoramaPublicSubmitterRole to nora.jahn@kit.edu
05 Feb 2025 14:48:41,609 INFO : Assigning PanoramaPublicSubmitterRole to k.scherf.leibniz-lsb@tum.de
05 Feb 2025 14:48:41,615 INFO : Adding user nora.jahn@kit.edu to group Panorama Public Submitters
05 Feb 2025 14:48:41,619 INFO : User k.scherf.leibniz-lsb@tum.de is already a member of group Panorama Public Submitters
05 Feb 2025 14:48:41,619 INFO : Updating the 'Raw Data' tab configuration
05 Feb 2025 14:48:41,621 INFO : Making folder public.
05 Feb 2025 14:48:41,623 INFO : Hiding the Data Pipeline tab.
05 Feb 2025 14:48:41,633 INFO : Updating Submission. Setting copiedExperimentId to 2004
05 Feb 2025 14:48:43,949 INFO : Assigning a ProteomeXchange ID.
05 Feb 2025 14:48:44,240 INFO : Assigned ProteomeXchange ID: PXD060528
05 Feb 2025 14:48:44,240 INFO : Assigning a DOI.
05 Feb 2025 14:48:44,980 INFO : Assigned DOI: 10.6069/fka5-me39
05 Feb 2025 14:48:45,029 INFO : Successfully completed task 'org.labkey.panoramapublic.pipeline.CopyExperimentFinalTask'